Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:50:19 (858129): wrapper (7.7.26015): starting
20:50:19 (858129): wrapper: running run_atlas (--nthreads 4)
[2026-01-25 20:50:19] Arguments: --nthreads 4
[2026-01-25 20:50:19] Threads: 4
[2026-01-25 20:50:19] Checking for CVMFS
[2026-01-25 20:50:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 20:50:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 20:50:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 20:50:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 20:50:22] 2.13.3.0 897907 6657 57064 155503 2 188 3702684 6144001 2733 130560 0 9720407 99.976 412863 114 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2026-01-25 20:50:22] CVMFS is ok
[2026-01-25 20:50:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 20:50:22] Checking for apptainer binary...
[2026-01-25 20:50:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 20:50:22] Running /usr/bin/apptainer --version
[2026-01-25 20:50:22] apptainer version 1.4.0
[2026-01-25 20:50:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 20:50:22] Zen
[2026-01-25 20:50:22] apptainer works
[2026-01-25 20:50:22] Set ATHENA_PROC_NUMBER=4
[2026-01-25 20:50:22] Set ATHENA_CORE_NUMBER=4
[2026-01-25 20:50:22] Starting ATLAS job with PandaID=6980376010
[2026-01-25 20:50:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 22:18:57]  *** The last 200 lines of the pilot log: ***
[2026-01-25 22:18:57]  lfn=log.48310670._009344.job.log.tgz.1
[2026-01-25 22:18:57]  mtime=0
[2026-01-25 22:18:57]  protocol_id=None
[2026-01-25 22:18:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-25 22:18:57]  replicas=None
[2026-01-25 22:18:57]  scope=mc23_13p6TeV
[2026-01-25 22:18:57]  status=None
[2026-01-25 22:18:57]  status_code=0
[2026-01-25 22:18:57]  storage_token=
[2026-01-25 22:18:57]  surl=/home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6980376010/log.48310670._009344.job.log.tgz.1
[2026-01-25 22:18:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/86/log.48310670._009344.job.log.tgz.1
[2026-01-25 22:18:57]  workdir=None
[2026-01-25 22:18:57] ]
[2026-01-25 22:18:57] 2026-01-25 11:18:04,636 | INFO     | transferring file log.48310670._009344.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6980376010/log.48310670._009344.job.log.tgz.1 to /home/mich
[2026-01-25 22:18:57] 2026-01-25 11:18:04,636 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6980376010/log.48310670._009344.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/3/lo
[2026-01-25 22:18:57] 2026-01-25 11:18:04,652 | INFO     | adding to output.list: log.48310670._009344.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/86/log.48310670._009344.job.log.tg
[2026-01-25 22:18:57] 2026-01-25 11:18:04,653 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-25 22:18:57] 2026-01-25 11:18:04,653 | INFO     | summary of transferred files:
[2026-01-25 22:18:57] 2026-01-25 11:18:04,653 | INFO     |  -- lfn=log.48310670._009344.job.log.tgz.1, status_code=0, status=transferred
[2026-01-25 22:18:57] 2026-01-25 11:18:04,653 | INFO     | stage-out finished correctly
[2026-01-25 22:18:57] 2026-01-25 11:18:04,759 | INFO     | PID=862304 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-25 22:18:57] 2026-01-25 11:18:04,759 | INFO     | .. there are 4 such processes running
[2026-01-25 22:18:57] 2026-01-25 11:18:05,759 | INFO     | time since job start (5243s) is within the limit (349056.0s)
[2026-01-25 22:18:57] 2026-01-25 11:18:06,120 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-25 22:18:57] 2026-01-25 11:18:07,764 | INFO     | time since job start (5245s) is within the limit (349056.0s)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,047 | INFO     | job 6980376010 has state=finished
[2026-01-25 22:18:57] 2026-01-25 11:18:08,047 | INFO     | preparing for final server update for job 6980376010 in state='finished'
[2026-01-25 22:18:57] 2026-01-25 11:18:08,050 | INFO     | reading metadata from: /home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6980376010/jobReport.json
[2026-01-25 22:18:57] 2026-01-25 11:18:08,052 | INFO     | added worker_node to metadata from /home/michael/Boinc/BOINC/slots/3/workernode_map.json
[2026-01-25 22:18:57] 2026-01-25 11:18:08,052 | INFO     | this job has now completed (state=finished)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,052 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,052 | INFO     | log transfer has been attempted: DONE
[2026-01-25 22:18:57] 2026-01-25 11:18:08,052 | INFO     | job 6980376010 has finished - writing final server update
[2026-01-25 22:18:57] 2026-01-25 11:18:08,052 | INFO     | total number of processed events: 400 (read)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,056 | INFO     | using path: /home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6980376010/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,056 | INFO     | extracted standard info from prmon json
[2026-01-25 22:18:57] 2026-01-25 11:18:08,056 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 22:18:57] 2026-01-25 11:18:08,056 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 22:18:57] 2026-01-25 11:18:08,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 22:18:57] 2026-01-25 11:18:08,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | fitting pss+swap vs Time
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | sum of square deviations: 152858680.0
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | sum of deviations: -3163636290.0
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | mean x: 1769337345.0
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | mean y: 2340470.417721519
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | intersect: 36621391700.57522
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | chi2: 0.012382121712527503
[2026-01-25 22:18:57] 2026-01-25 11:18:08,058 | INFO     | current memory leak: -20.70 B/s (using 79 data points, chi2=0.01)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | could have reported an average CPU frequency of 4255 MHz (6 samples)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | ..............................
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . Timing measurements:
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . get job = 0 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . initial setup = 8 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . payload setup = 4 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . stage-in = 0 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . payload execution = 5222 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . stage-out = 0 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | . log creation = 0 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,059 | INFO     | ..............................
[2026-01-25 22:18:57] 2026-01-25 11:18:08,124 | INFO     | 
[2026-01-25 22:18:57] 2026-01-25 11:18:08,124 | INFO     | job summary report
[2026-01-25 22:18:57] 2026-01-25 11:18:08,124 | INFO     | --------------------------------------------------
[2026-01-25 22:18:57] 2026-01-25 11:18:08,124 | INFO     | PanDA job id: 6980376010
[2026-01-25 22:18:57] 2026-01-25 11:18:08,124 | INFO     | task id: 48310670
[2026-01-25 22:18:57] 2026-01-25 11:18:08,124 | INFO     | errors: (none)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | pilot state: finished 
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | transexitcode: 0
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | exeerrorcode: 0
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | exeerrordiag: 
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | exitcode: 0
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | exitmsg: OK
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | cpuconsumptiontime: 19545 s
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | nevents: 400
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | neventsw: 0
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | pid: 866824
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | pgrp: 866824
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | corecount: 4
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | event service: False
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | sizes: {0: 2284251, 11: 2284251, 5230: 2319851, 5232: 2319851, 5234: 2320045}
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | --------------------------------------------------
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | 
[2026-01-25 22:18:57] 2026-01-25 11:18:08,125 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/3
[2026-01-25 22:18:57] 2026-01-25 11:18:08,148 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,149 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | job 6980376010 has completed (purged errors)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,150 | INFO     | overall cleanup function is called
[2026-01-25 22:18:57] 2026-01-25 11:18:08,349 | WARNING  | process 866824 can no longer be monitored (due to stat problems) - aborting
[2026-01-25 22:18:57] 2026-01-25 11:18:08,445 | INFO     | using path: /home/michael/Boinc/BOINC/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 22:18:57] 2026-01-25 11:18:08,607 | INFO     | number of running child processes to parent process 866824: 1
[2026-01-25 22:18:57] 2026-01-25 11:18:08,607 | INFO     | maximum number of monitored processes: 6
[2026-01-25 22:18:57] 2026-01-25 11:18:08,607 | INFO     | aborting job monitoring since job object (job id=6980376010) has expired
[2026-01-25 22:18:57] 2026-01-25 11:18:09,158 | INFO     | --- collectZombieJob: --- 10, [866824]
[2026-01-25 22:18:57] 2026-01-25 11:18:09,158 | INFO     | zombie collector waiting for pid 866824
[2026-01-25 22:18:57] 2026-01-25 11:18:09,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 22:18:57] 2026-01-25 11:18:09,158 | INFO     | collected zombie processes
[2026-01-25 22:18:57] 2026-01-25 11:18:09,158 | INFO     | will attempt to kill all subprocesses of pid=866824
[2026-01-25 22:18:57] 2026-01-25 11:18:09,312 | INFO     | process IDs to be killed: [866824] (in reverse order)
[2026-01-25 22:18:57] 2026-01-25 11:18:09,370 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 22:18:57] 2026-01-25 11:18:09,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 22:18:57] 2026-01-25 11:18:09,374 | INFO     | did not find any defunct processes belonging to 866824
[2026-01-25 22:18:57] 2026-01-25 11:18:09,378 | INFO     | did not find any defunct processes belonging to 866824
[2026-01-25 22:18:57] 2026-01-25 11:18:09,378 | INFO     | ready for new job
[2026-01-25 22:18:57] 2026-01-25 11:18:09,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 22:18:57] 2026-01-25 11:18:09,379 | INFO     | **************************************
[2026-01-25 22:18:57] 2026-01-25 11:18:09,379 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 22:18:57] 2026-01-25 11:18:09,379 | INFO     | **************************************
[2026-01-25 22:18:57] 2026-01-25 11:18:09,379 | INFO     | 
[2026-01-25 22:18:57] 2026-01-25 11:18:09,380 | INFO     | architecture information:
[2026-01-25 22:18:57] 2026-01-25 11:18:09,381 | INFO     | executing command: cat /etc/os-release
[2026-01-25 22:18:57] 2026-01-25 11:18:09,400 | INFO     | cat /etc/os-release:
[2026-01-25 22:18:57] NAME="CentOS Linux"
[2026-01-25 22:18:57] VERSION="7 (Core)"
[2026-01-25 22:18:57] ID="centos"
[2026-01-25 22:18:57] ID_LIKE="rhel fedora"
[2026-01-25 22:18:57] VERSION_ID="7"
[2026-01-25 22:18:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 22:18:57] ANSI_COLOR="0;31"
[2026-01-25 22:18:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 22:18:57] HOME_URL="https://www.centos.org/"
[2026-01-25 22:18:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 22:18:57] 
[2026-01-25 22:18:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 22:18:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 22:18:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 22:18:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 22:18:57] 
[2026-01-25 22:18:57] 2026-01-25 11:18:09,401 | INFO     | **************************************
[2026-01-25 22:18:57] 2026-01-25 11:18:09,903 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/3
[2026-01-25 22:18:57] 2026-01-25 11:18:09,920 | INFO     | sufficient remaining disk space (193432911872 B)
[2026-01-25 22:18:57] 2026-01-25 11:18:09,920 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 22:18:57] 2026-01-25 11:18:09,920 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 22:18:57] 2026-01-25 11:18:09,920 | INFO     | update_server=False
[2026-01-25 22:18:57] 2026-01-25 11:18:09,920 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 22:18:57] 2026-01-25 11:18:09,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:18:57] 2026-01-25 11:18:09,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 22:18:57] 2026-01-25 11:18:09,921 | INFO     | aborting loop
[2026-01-25 22:18:57] 2026-01-25 11:18:10,183 | INFO     | all payload control threads have been joined
[2026-01-25 22:18:57] 2026-01-25 11:18:10,225 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 22:18:57] 2026-01-25 11:18:10,460 | INFO     | all data control threads have been joined
[2026-01-25 22:18:57] 2026-01-25 11:18:10,925 | INFO     | [job] retrieve thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:10,926 | INFO     | [job] queue monitor thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:10,926 | INFO     | [job] job monitor thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,074 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,188 | INFO     | [payload] control thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,397 | INFO     | [job] validate thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,462 | INFO     | all job control threads have been joined
[2026-01-25 22:18:57] 2026-01-25 11:18:11,465 | INFO     | [data] control thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,541 | INFO     | [payload] validate_post thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,544 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,609 | INFO     | [payload] failed_post thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,674 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:11,893 | INFO     | [data] copytool_in thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:12,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 22:18:57] 2026-01-25 11:18:12,230 | INFO     | [data] copytool_out thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:12,467 | INFO     | [job] control thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:16,193 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:20,912 | INFO     | job.realtimelogging is not enabled
[2026-01-25 22:18:57] 2026-01-25 11:18:21,917 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 22:18:57] 2026-01-25 11:18:40,964 | INFO     | PID=862304 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-25 22:18:57] 2026-01-25 11:18:40,965 | INFO     | .. there are 4 such processes running
[2026-01-25 22:18:57] 2026-01-25 11:18:40,965 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 22:18:57] 2026-01-25 11:18:40,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 22:18:57] 2026-01-25 11:18:40,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 22:18:57] 2026-01-25 11:18:50,986 | INFO     | [monitor] cgroup control has ended
[2026-01-25 22:18:57] 2026-01-25 11:18:52,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136206018086720)>', '<ExcThread(monitor, started 136205526087424)>']
[2026-01-25 22:18:57] 2026-01-25 11:18:53,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 22:18:57] 2026-01-25 11:18:53,023 | INFO     | [monitor] control thread has ended
[2026-01-25 22:18:57] 2026-01-25 11:18:57,360 | INFO     | all workflow threads have been joined
[2026-01-25 22:18:57] 2026-01-25 11:18:57,360 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 22:18:57] 2026-01-25 11:18:57,360 | INFO     | traces error code: 0
[2026-01-25 22:18:57] 2026-01-25 11:18:57,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 22:18:57] 2026-01-25 11:18:57,443 [wrapper] ==== pilot stdout END ====
[2026-01-25 22:18:57] 2026-01-25 11:18:57,446 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 22:18:57] 2026-01-25 11:18:57,448 [wrapper] pilotpid: 862304
[2026-01-25 22:18:57] 2026-01-25 11:18:57,450 [wrapper] Pilot exit status: 0
[2026-01-25 22:18:57] 2026-01-25 11:18:57,459 [wrapper] pandaids: 6980376010
[2026-01-25 22:18:57] 2026-01-25 11:18:57,495 [wrapper] cleanup supervisor_pilot  922847 862305
[2026-01-25 22:18:57] 2026-01-25 11:18:57,498 [wrapper] Test setup, not cleaning
[2026-01-25 22:18:57] 2026-01-25 11:18:57,500 [wrapper] apfmon messages muted
[2026-01-25 22:18:57] 2026-01-25 11:18:57,502 [wrapper] ==== wrapper stdout END ====
[2026-01-25 22:18:57] 2026-01-25 11:18:57,504 [wrapper] ==== wrapper stderr END ====
[2026-01-25 22:18:57]  *** Error codes and diagnostics ***
[2026-01-25 22:18:57]     "exeErrorCode": 0,
[2026-01-25 22:18:57]     "exeErrorDiag": "",
[2026-01-25 22:18:57]     "pilotErrorCode": 0,
[2026-01-25 22:18:57]     "pilotErrorDiag": "",
[2026-01-25 22:18:57]  *** Listing of results directory ***
[2026-01-25 22:18:57] total 664092
[2026-01-25 22:18:57] -rwx------ 1 michael michael     36322 Jan 24 17:06 runpilot2-wrapper.sh
[2026-01-25 22:18:57] -rw-r--r-- 1 michael michael      5111 Jan 24 17:09 queuedata.json
[2026-01-25 22:18:57] -rw-r--r-- 1 michael michael    584422 Jan 24 17:09 pilot3.tar.gz
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael       100 Jan 25 20:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 22:18:57] -rwxr-xr-x 1 michael michael      7986 Jan 25 20:50 run_atlas
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael       105 Jan 25 20:50 job.xml
[2026-01-25 22:18:57] -rw-r--r-- 2 michael michael 497902117 Jan 25 20:50 EVNT.48310665._000187.pool.root.1
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael      9823 Jan 25 20:50 init_data.xml
[2026-01-25 22:18:57] drwxrwx--x 2 michael michael      4096 Jan 25 20:50 shared
[2026-01-25 22:18:57] -rw-r--r-- 2 michael michael    597755 Jan 25 20:50 input.tar.gz
[2026-01-25 22:18:57] -rw-r--r-- 2 michael michael     15845 Jan 25 20:50 start_atlas.sh
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael         0 Jan 25 20:50 boinc_lockfile
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael      2521 Jan 25 20:50 pandaJob.out
[2026-01-25 22:18:57] -rw------- 1 michael michael        50 Jan 25 20:50 setup.sh.local
[2026-01-25 22:18:57] -rw------- 1 michael michael   1004246 Jan 25 20:50 agis_schedconf.cvmfs.json
[2026-01-25 22:18:57] -rw------- 1 michael michael   1516246 Jan 25 20:50 agis_ddmendpoints.agis.ALL.json
[2026-01-25 22:18:57] -rw------- 1 michael michael       410 Jan 25 20:50 workernode_map.json
[2026-01-25 22:18:57] drwx------ 5 michael michael      4096 Jan 25 20:50 pilot3
[2026-01-25 22:18:57] -rw------- 1 michael michael 175992899 Jan 25 22:17 HITS.48310670._009344.pool.root.1
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael       530 Jan 25 22:17 boinc_task_state.xml
[2026-01-25 22:18:57] -rw------- 1 michael michael      1025 Jan 25 22:18 memory_monitor_summary.json
[2026-01-25 22:18:57] -rw------- 1 michael michael    309625 Jan 25 22:18 log.48310670._009344.job.log.tgz.1
[2026-01-25 22:18:57] -rw------- 1 michael michael      6266 Jan 25 22:18 heartbeat.json
[2026-01-25 22:18:57] -rw------- 1 michael michael        95 Jan 25 22:18 pilot_heartbeat.json
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael      8192 Jan 25 22:18 boinc_mmap_file
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael        27 Jan 25 22:18 wrapper_checkpoint.txt
[2026-01-25 22:18:57] -rw------- 1 michael michael      4902 Jan 25 22:18 pilotlog.txt
[2026-01-25 22:18:57] -rw------- 1 michael michael    782964 Jan 25 22:18 log.48310670._009344.job.log.1
[2026-01-25 22:18:57] -rw------- 1 michael michael       357 Jan 25 22:18 output.list
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael       620 Jan 25 22:18 runtime_log
[2026-01-25 22:18:57] -rw------- 1 michael michael   1105920 Jan 25 22:18 result.tar.gz
[2026-01-25 22:18:57] -rw------- 1 michael michael       640 Jan 25 22:18 V2SKDmgxl38n9Rq4apOajLDm4fhM0noT9bVo0NGKDm83xKDmLxdDOo.diag
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael      9444 Jan 25 22:18 runtime_log.err
[2026-01-25 22:18:57] -rw-rw-r-- 1 michael michael     21440 Jan 25 22:18 stderr.txt
[2026-01-25 22:18:57] HITS file was successfully produced:
[2026-01-25 22:18:57] -rw------- 1 michael michael 175992899 Jan 25 22:17 shared/HITS.pool.root.1
[2026-01-25 22:18:57]  *** Contents of shared directory: ***
[2026-01-25 22:18:57] total 659796
[2026-01-25 22:18:57] -rw-r--r-- 2 michael michael 497902117 Jan 25 20:50 ATLAS.root_0
[2026-01-25 22:18:57] -rw-r--r-- 2 michael michael    597755 Jan 25 20:50 input.tar.gz
[2026-01-25 22:18:57] -rw-r--r-- 2 michael michael     15845 Jan 25 20:50 start_atlas.sh
[2026-01-25 22:18:57] -rw------- 1 michael michael 175992899 Jan 25 22:17 HITS.pool.root.1
[2026-01-25 22:18:57] -rw------- 1 michael michael   1105920 Jan 25 22:18 result.tar.gz
22:18:59 (858129): run_atlas exited; CPU time 19603.732412
22:18:59 (858129): called boinc_finish(0)

</stderr_txt>
]]>

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