Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
11:46:41 (2612257): wrapper (7.7.26015): starting
11:46:41 (2612257): wrapper: running run_atlas (--nthreads 4)
[2026-01-25 11:46:41] Arguments: --nthreads 4
[2026-01-25 11:46:41] Threads: 4
[2026-01-25 11:46:41] Checking for CVMFS
[2026-01-25 11:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 11:46:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 11:46:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 11:46:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 11:46:42] 2.13.3.0 80730 7827 46644 155503 1 50 20252461 33554432 0 130560 0 4057104 99.989 237841 201 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-25 11:46:42] CVMFS is ok
[2026-01-25 11:46:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 11:46:42] Checking for apptainer binary...
[2026-01-25 11:46:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 11:46:42] Running /usr/bin/apptainer --version
[2026-01-25 11:46:42] apptainer version 1.4.5
[2026-01-25 11:46:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 11:46:42] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-25 11:46:42] apptainer works
[2026-01-25 11:46:42] Set ATHENA_PROC_NUMBER=4
[2026-01-25 11:46:42] Set ATHENA_CORE_NUMBER=4
[2026-01-25 11:46:42] Starting ATLAS job with PandaID=6980373331
[2026-01-25 11:46:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 13:00:13]  *** The last 200 lines of the pilot log: ***
[2026-01-25 13:00:13]  scope=mc23_13p6TeV
[2026-01-25 13:00:13]  status=None
[2026-01-25 13:00:13]  status_code=0
[2026-01-25 13:00:13]  storage_token=
[2026-01-25 13:00:13]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6980373331/log.48299621._000364.job.log.tgz.1
[2026-01-25 13:00:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/97/log.48299621._000364.job.log.tgz.1
[2026-01-25 13:00:13]  workdir=None
[2026-01-25 13:00:13] ]
[2026-01-25 13:00:13] 2026-01-25 10:59:37,837 | INFO     | transferring file log.48299621._000364.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6980373331/log.48299621._000364.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-25 13:00:13] 2026-01-25 10:59:37,837 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6980373331/log.48299621._000364.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48299621._000364.job
[2026-01-25 13:00:13] 2026-01-25 10:59:37,845 | INFO     | adding to output.list: log.48299621._000364.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/97/log.48299621._000364.job.log.tg
[2026-01-25 13:00:13] 2026-01-25 10:59:37,846 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-25 13:00:13] 2026-01-25 10:59:37,846 | INFO     | summary of transferred files:
[2026-01-25 13:00:13] 2026-01-25 10:59:37,846 | INFO     |  -- lfn=log.48299621._000364.job.log.tgz.1, status_code=0, status=transferred
[2026-01-25 13:00:13] 2026-01-25 10:59:37,846 | INFO     | stage-out finished correctly
[2026-01-25 13:00:13] 2026-01-25 10:59:38,081 | INFO     | time since job start (4369s) is within the limit (349056.0s)
[2026-01-25 13:00:13] 2026-01-25 10:59:39,110 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-25 13:00:13] 2026-01-25 10:59:40,086 | INFO     | time since job start (4371s) is within the limit (349056.0s)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,144 | INFO     | job 6980373331 has state=finished
[2026-01-25 13:00:13] 2026-01-25 10:59:41,144 | INFO     | preparing for final server update for job 6980373331 in state='finished'
[2026-01-25 13:00:13] 2026-01-25 10:59:41,144 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6980373331/jobReport.json
[2026-01-25 13:00:13] 2026-01-25 10:59:41,145 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-25 13:00:13] 2026-01-25 10:59:41,145 | INFO     | this job has now completed (state=finished)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,146 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,146 | INFO     | log transfer has been attempted: DONE
[2026-01-25 13:00:13] 2026-01-25 10:59:41,146 | INFO     | job 6980373331 has finished - writing final server update
[2026-01-25 13:00:13] 2026-01-25 10:59:41,146 | INFO     | total number of processed events: 400 (read)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,148 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6980373331/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,148 | INFO     | extracted standard info from prmon json
[2026-01-25 13:00:13] 2026-01-25 10:59:41,148 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 13:00:13] 2026-01-25 10:59:41,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 13:00:13] 2026-01-25 10:59:41,148 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 13:00:13] 2026-01-25 10:59:41,148 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | fitting pss+swap vs Time
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | sum of square deviations: 85136480.0
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | sum of deviations: -11322664327.999998
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | mean x: 1769336682.0
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | mean y: 2505349.4307692307
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | intersect: 235314152407.22873
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | chi2: 0.1415207771584761
[2026-01-25 13:00:13] 2026-01-25 10:59:41,149 | INFO     | current memory leak: -132.99 B/s (using 65 data points, chi2=0.14)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | could have reported an average CPU frequency of 3854 MHz (6 samples)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | ..............................
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . Timing measurements:
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . get job = 0 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . initial setup = 3 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . payload setup = 2 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . stage-in = 0 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . payload execution = 4351 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . stage-out = 0 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | . log creation = 0 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,150 | INFO     | ..............................
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | 
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | job summary report
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | --------------------------------------------------
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | PanDA job id: 6980373331
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | task id: 48299621
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | errors: (none)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | pilot state: finished 
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | transexitcode: 0
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | exeerrorcode: 0
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | exeerrordiag: 
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | exitcode: 0
[2026-01-25 13:00:13] 2026-01-25 10:59:41,178 | INFO     | exitmsg: OK
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | cpuconsumptiontime: 16541 s
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | nevents: 400
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | neventsw: 0
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | pid: 2620914
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | pgrp: 2620914
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | corecount: 4
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | event service: False
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | sizes: {0: 2283771, 1: 2284288, 11: 2284288, 4357: 2310486, 4358: 2319539, 4359: 2319539, 4361: 2319861}
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | --------------------------------------------------
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | 
[2026-01-25 13:00:13] 2026-01-25 10:59:41,179 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | job 6980373331 has completed (purged errors)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,188 | INFO     | overall cleanup function is called
[2026-01-25 13:00:13] 2026-01-25 10:59:41,232 | WARNING  | process 2620914 can no longer be monitored (due to stat problems) - aborting
[2026-01-25 13:00:13] 2026-01-25 10:59:41,293 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,294 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,294 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-25 13:00:13] 2026-01-25 10:59:41,294 | WARNING  | maxPSS not found in memory monitor output
[2026-01-25 13:00:13] 2026-01-25 10:59:41,294 | INFO     | skipping file size check of payload stdout file (/home/ek/BOINC/slots/1/PanDA_Pilot-6980373331/payload.stdout) since it has not been created yet
[2026-01-25 13:00:13] 2026-01-25 10:59:41,294 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-25 13:00:13] 2026-01-25 10:59:41,302 | INFO     | sufficient remaining disk space (71858913280 B)
[2026-01-25 13:00:13] 2026-01-25 10:59:41,302 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-25 13:00:13] 2026-01-25 10:59:41,302 | INFO     | output file size check: skipping output file /home/ek/BOINC/slots/1/PanDA_Pilot-6980373331/HITS.48299621._000364.pool.root.1 since it does not exist
[2026-01-25 13:00:13] 2026-01-25 10:59:41,400 | INFO     | number of running child processes to parent process 2620914: 1
[2026-01-25 13:00:13] 2026-01-25 10:59:41,400 | INFO     | maximum number of monitored processes: 6
[2026-01-25 13:00:13] 2026-01-25 10:59:41,400 | INFO     | aborting job monitoring since job object (job id=6980373331) has expired
[2026-01-25 13:00:13] 2026-01-25 10:59:42,195 | INFO     | --- collectZombieJob: --- 10, [2620914]
[2026-01-25 13:00:13] 2026-01-25 10:59:42,195 | INFO     | zombie collector waiting for pid 2620914
[2026-01-25 13:00:13] 2026-01-25 10:59:42,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 13:00:13] 2026-01-25 10:59:42,195 | INFO     | collected zombie processes
[2026-01-25 13:00:13] 2026-01-25 10:59:42,195 | INFO     | will attempt to kill all subprocesses of pid=2620914
[2026-01-25 13:00:13] 2026-01-25 10:59:42,289 | INFO     | process IDs to be killed: [2620914] (in reverse order)
[2026-01-25 13:00:13] 2026-01-25 10:59:42,323 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 13:00:13] 2026-01-25 10:59:42,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 13:00:13] 2026-01-25 10:59:42,326 | INFO     | did not find any defunct processes belonging to 2620914
[2026-01-25 13:00:13] 2026-01-25 10:59:42,328 | INFO     | did not find any defunct processes belonging to 2620914
[2026-01-25 13:00:13] 2026-01-25 10:59:42,329 | INFO     | ready for new job
[2026-01-25 13:00:13] 2026-01-25 10:59:42,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 13:00:13] 2026-01-25 10:59:42,329 | INFO     | **************************************
[2026-01-25 13:00:13] 2026-01-25 10:59:42,329 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 13:00:13] 2026-01-25 10:59:42,329 | INFO     | **************************************
[2026-01-25 13:00:13] 2026-01-25 10:59:42,330 | INFO     | 
[2026-01-25 13:00:13] 2026-01-25 10:59:42,330 | INFO     | architecture information:
[2026-01-25 13:00:13] 2026-01-25 10:59:42,330 | INFO     | executing command: cat /etc/os-release
[2026-01-25 13:00:13] 2026-01-25 10:59:42,337 | INFO     | cat /etc/os-release:
[2026-01-25 13:00:13] NAME="CentOS Linux"
[2026-01-25 13:00:13] VERSION="7 (Core)"
[2026-01-25 13:00:13] ID="centos"
[2026-01-25 13:00:13] ID_LIKE="rhel fedora"
[2026-01-25 13:00:13] VERSION_ID="7"
[2026-01-25 13:00:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 13:00:13] ANSI_COLOR="0;31"
[2026-01-25 13:00:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 13:00:13] HOME_URL="https://www.centos.org/"
[2026-01-25 13:00:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 13:00:13] 
[2026-01-25 13:00:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 13:00:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 13:00:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 13:00:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 13:00:13] 
[2026-01-25 13:00:13] 2026-01-25 10:59:42,337 | INFO     | **************************************
[2026-01-25 13:00:13] 2026-01-25 10:59:42,840 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | INFO     | sufficient remaining disk space (71859961856 B)
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | INFO     | update_server=False
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 13:00:13] 2026-01-25 10:59:42,847 | INFO     | aborting loop
[2026-01-25 13:00:13] 2026-01-25 10:59:43,207 | INFO     | all data control threads have been joined
[2026-01-25 13:00:13] 2026-01-25 10:59:43,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 13:00:13] 2026-01-25 10:59:43,549 | INFO     | all job control threads have been joined
[2026-01-25 13:00:13] 2026-01-25 10:59:43,852 | INFO     | [job] retrieve thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:43,852 | INFO     | [job] queue monitor thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:43,853 | INFO     | [job] job monitor thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,049 | INFO     | job.realtimelogging is not enabled
[2026-01-25 13:00:13] 2026-01-25 10:59:44,105 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,212 | INFO     | [data] control thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,310 | INFO     | [job] validate thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,350 | INFO     | all payload control threads have been joined
[2026-01-25 13:00:13] 2026-01-25 10:59:44,372 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,412 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,487 | INFO     | [payload] failed_post thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,546 | INFO     | [data] copytool_in thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:44,554 | INFO     | [job] control thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:45,018 | INFO     | [payload] validate_post thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:45,054 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:45,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 13:00:13] 2026-01-25 10:59:45,356 | INFO     | [payload] control thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:45,389 | INFO     | [data] copytool_out thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:49,146 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 13:00:13] 2026-01-25 10:59:55,719 | INFO     | [monitor] cgroup control has ended
[2026-01-25 13:00:13] 2026-01-25 10:59:56,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908428826432)>', '<ExcThread(monitor, started 139907796289280)>']
[2026-01-25 13:00:13] 2026-01-25 11:00:01,384 | INFO     | all workflow threads have been joined
[2026-01-25 13:00:13] 2026-01-25 11:00:01,385 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 13:00:13] 2026-01-25 11:00:01,385 | INFO     | traces error code: 0
[2026-01-25 13:00:13] 2026-01-25 11:00:01,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 13:00:13] 2026-01-25 11:00:13,256 | INFO     | PID=2616065 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 13:00:13] 2026-01-25 11:00:13,256 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 13:00:13] 2026-01-25 11:00:13,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 13:00:13] 2026-01-25 11:00:13,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 13:00:13] 2026-01-25 11:00:13,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 13:00:13] 2026-01-25 11:00:13,256 | INFO     | [monitor] control thread has ended
[2026-01-25 13:00:13] 2026-01-25 11:00:13,294 [wrapper] ==== pilot stdout END ====
[2026-01-25 13:00:13] 2026-01-25 11:00:13,296 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 13:00:13] 2026-01-25 11:00:13,298 [wrapper] pilotpid: 2616065
[2026-01-25 13:00:13] 2026-01-25 11:00:13,299 [wrapper] Pilot exit status: 0
[2026-01-25 13:00:13] 2026-01-25 11:00:13,307 [wrapper] pandaids: 6980373331
[2026-01-25 13:00:13] 2026-01-25 11:00:13,332 [wrapper] cleanup supervisor_pilot 2664330 2616066
[2026-01-25 13:00:13] 2026-01-25 11:00:13,334 [wrapper] Test setup, not cleaning
[2026-01-25 13:00:13] 2026-01-25 11:00:13,335 [wrapper] apfmon messages muted
[2026-01-25 13:00:13] 2026-01-25 11:00:13,336 [wrapper] ==== wrapper stdout END ====
[2026-01-25 13:00:13] 2026-01-25 11:00:13,338 [wrapper] ==== wrapper stderr END ====
[2026-01-25 13:00:13]  *** Error codes and diagnostics ***
[2026-01-25 13:00:13]     "exeErrorCode": 0,
[2026-01-25 13:00:13]     "exeErrorDiag": "",
[2026-01-25 13:00:13]     "pilotErrorCode": 0,
[2026-01-25 13:00:13]     "pilotErrorDiag": "",
[2026-01-25 13:00:13]  *** Listing of results directory ***
[2026-01-25 13:00:13] total 404992
[2026-01-25 13:00:13] -rw-r--r-- 1 ek ek      5111 Jan 24 06:10 queuedata.json
[2026-01-25 13:00:13] -rw-r--r-- 1 ek ek    584422 Jan 24 06:10 pilot3.tar.gz
[2026-01-25 13:00:13] -rwx------ 1 ek ek     36322 Jan 24 06:10 runpilot2-wrapper.sh
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek       100 Jan 25 11:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 13:00:13] -rwxr-xr-x 1 ek ek      7986 Jan 25 11:46 run_atlas
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek       105 Jan 25 11:46 job.xml
[2026-01-25 13:00:13] -rw-r--r-- 2 ek ek 247962483 Jan 25 11:46 EVNT.48299619._000002.pool.root.1
[2026-01-25 13:00:13] -rw-r--r-- 2 ek ek    597775 Jan 25 11:46 input.tar.gz
[2026-01-25 13:00:13] -rw-r--r-- 2 ek ek     15845 Jan 25 11:46 start_atlas.sh
[2026-01-25 13:00:13] drwxrwx--x 2 ek ek      4096 Jan 25 11:46 shared
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek         0 Jan 25 11:46 boinc_setup_complete
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek      9841 Jan 25 11:46 init_data.xml
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek         0 Jan 25 11:46 boinc_lockfile
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek      2608 Jan 25 11:46 pandaJob.out
[2026-01-25 13:00:13] -rw------- 1 ek ek        50 Jan 25 11:46 setup.sh.local
[2026-01-25 13:00:13] -rw------- 1 ek ek   1004246 Jan 25 11:46 agis_schedconf.cvmfs.json
[2026-01-25 13:00:13] -rw------- 1 ek ek   1516246 Jan 25 11:46 agis_ddmendpoints.agis.ALL.json
[2026-01-25 13:00:13] -rw------- 1 ek ek       432 Jan 25 11:46 workernode_map.json
[2026-01-25 13:00:13] drwx------ 5 ek ek      4096 Jan 25 11:46 pilot3
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek       529 Jan 25 12:59 boinc_task_state.xml
[2026-01-25 13:00:13] -rw------- 1 ek ek 160999657 Jan 25 12:59 HITS.48299621._000364.pool.root.1
[2026-01-25 13:00:13] -rw------- 1 ek ek        95 Jan 25 12:59 pilot_heartbeat.json
[2026-01-25 13:00:13] -rw------- 1 ek ek      1022 Jan 25 12:59 memory_monitor_summary.json
[2026-01-25 13:00:13] -rw------- 1 ek ek    255764 Jan 25 12:59 log.48299621._000364.job.log.tgz.1
[2026-01-25 13:00:13] -rw------- 1 ek ek      6312 Jan 25 12:59 heartbeat.json
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek      8192 Jan 25 12:59 boinc_mmap_file
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek        27 Jan 25 12:59 wrapper_checkpoint.txt
[2026-01-25 13:00:13] -rw------- 1 ek ek       747 Jan 25 13:00 pilotlog.txt
[2026-01-25 13:00:13] -rw------- 1 ek ek    643808 Jan 25 13:00 log.48299621._000364.job.log.1
[2026-01-25 13:00:13] -rw------- 1 ek ek       357 Jan 25 13:00 output.list
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek       620 Jan 25 13:00 runtime_log
[2026-01-25 13:00:13] -rw------- 1 ek ek    921600 Jan 25 13:00 result.tar.gz
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek      9501 Jan 25 13:00 runtime_log.err
[2026-01-25 13:00:13] -rw------- 1 ek ek       660 Jan 25 13:00 0CbMDmt9j38n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7dxKDml8Ag4n.diag
[2026-01-25 13:00:13] -rw-rw-r-- 1 ek ek     21951 Jan 25 13:00 stderr.txt
[2026-01-25 13:00:13] HITS file was successfully produced:
[2026-01-25 13:00:13] -rw------- 1 ek ek 160999657 Jan 25 12:59 shared/HITS.pool.root.1
[2026-01-25 13:00:13]  *** Contents of shared directory: ***
[2026-01-25 13:00:13] total 400888
[2026-01-25 13:00:13] -rw-r--r-- 2 ek ek 247962483 Jan 25 11:46 ATLAS.root_0
[2026-01-25 13:00:13] -rw-r--r-- 2 ek ek    597775 Jan 25 11:46 input.tar.gz
[2026-01-25 13:00:13] -rw-r--r-- 2 ek ek     15845 Jan 25 11:46 start_atlas.sh
[2026-01-25 13:00:13] -rw------- 1 ek ek 160999657 Jan 25 12:59 HITS.pool.root.1
[2026-01-25 13:00:13] -rw------- 1 ek ek    921600 Jan 25 13:00 result.tar.gz
13:00:14 (2612257): run_atlas exited; CPU time 16586.090841
13:00:14 (2612257): called boinc_finish(0)

</stderr_txt>
]]>

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