Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:11:05 (1044663): wrapper (7.7.26015): starting
19:11:05 (1044663): wrapper: running run_atlas (--nthreads 4)
[2026-01-24 19:11:05] Arguments: --nthreads 4
[2026-01-24 19:11:05] Threads: 4
[2026-01-24 19:11:05] Checking for CVMFS
[2026-01-24 19:11:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 19:11:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 19:11:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 19:11:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 19:11:06] 2.9.2.0 41542 5915 106720 155480 3 50 22256476 36864000 0 130560 0 2846008 99.988 171654 11775 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-24 19:11:06] CVMFS is ok
[2026-01-24 19:11:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-24 19:11:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-24 19:11:06] Further information can be found at the LHC@home message board.
[2026-01-24 19:11:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 19:11:06] Checking for apptainer binary...
[2026-01-24 19:11:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 19:11:06] Running /usr/bin/apptainer --version
[2026-01-24 19:11:06] apptainer version 1.4.1-1.1
[2026-01-24 19:11:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 19:11:06] thA332a
[2026-01-24 19:11:06] apptainer works
[2026-01-24 19:11:06] Set ATHENA_PROC_NUMBER=4
[2026-01-24 19:11:06] Set ATHENA_CORE_NUMBER=4
[2026-01-24 19:11:06] Starting ATLAS job with PandaID=6979415358
[2026-01-24 19:11:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 20:38:33]  *** The last 200 lines of the pilot log: ***
[2026-01-24 20:38:33] 2026-01-24 19:37:26,507 | INFO     | process IDs to be killed: [1053281] (in reverse order)
[2026-01-24 20:38:33] 2026-01-24 19:37:26,541 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 20:38:33] 2026-01-24 19:37:26,542 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 20:38:33] 2026-01-24 19:37:26,543 | INFO     | did not find any defunct processes belonging to 1053281
[2026-01-24 20:38:33] 2026-01-24 19:37:26,545 | INFO     | did not find any defunct processes belonging to 1053281
[2026-01-24 20:38:33] 2026-01-24 19:37:26,545 | INFO     | ready for new job
[2026-01-24 20:38:33] 2026-01-24 19:37:26,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 20:38:33] 2026-01-24 19:37:26,546 | INFO     | **************************************
[2026-01-24 20:38:33] 2026-01-24 19:37:26,546 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 20:38:33] 2026-01-24 19:37:26,546 | INFO     | **************************************
[2026-01-24 20:38:33] 2026-01-24 19:37:26,546 | INFO     | 
[2026-01-24 20:38:33] 2026-01-24 19:37:26,546 | INFO     | architecture information:
[2026-01-24 20:38:33] 2026-01-24 19:37:26,546 | INFO     | executing command: cat /etc/os-release
[2026-01-24 20:38:33] 2026-01-24 19:37:26,560 | INFO     | cat /etc/os-release:
[2026-01-24 20:38:33] NAME="CentOS Linux"
[2026-01-24 20:38:33] VERSION="7 (Core)"
[2026-01-24 20:38:33] ID="centos"
[2026-01-24 20:38:33] ID_LIKE="rhel fedora"
[2026-01-24 20:38:33] VERSION_ID="7"
[2026-01-24 20:38:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 20:38:33] ANSI_COLOR="0;31"
[2026-01-24 20:38:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 20:38:33] HOME_URL="https://www.centos.org/"
[2026-01-24 20:38:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 20:38:33] 
[2026-01-24 20:38:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 20:38:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 20:38:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 20:38:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 20:38:33] 
[2026-01-24 20:38:33] 2026-01-24 19:37:26,561 | INFO     | **************************************
[2026-01-24 20:38:33] 2026-01-24 19:37:27,064 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-24 20:38:33] 2026-01-24 19:37:27,082 | INFO     | sufficient remaining disk space (334862745600 B)
[2026-01-24 20:38:33] 2026-01-24 19:37:27,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 20:38:33] 2026-01-24 19:37:27,082 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 20:38:33] 2026-01-24 19:37:27,082 | INFO     | update_server=False
[2026-01-24 20:38:33] 2026-01-24 19:37:27,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 20:38:33] 2026-01-24 19:37:27,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 20:38:33] 2026-01-24 19:37:27,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 20:38:33] 2026-01-24 19:37:27,083 | INFO     | aborting loop
[2026-01-24 20:38:33] 2026-01-24 19:37:27,485 | INFO     | all payload control threads have been joined
[2026-01-24 20:38:33] 2026-01-24 19:37:27,562 | INFO     | all data control threads have been joined
[2026-01-24 20:38:33] 2026-01-24 19:37:27,833 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 20:38:33] 2026-01-24 19:37:27,977 | INFO     | all job control threads have been joined
[2026-01-24 20:38:33] 2026-01-24 19:37:28,088 | INFO     | [job] retrieve thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:28,088 | INFO     | [job] queue monitor thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:28,089 | INFO     | [job] job monitor thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:28,375 | INFO     | [payload] validate_post thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:28,491 | INFO     | [payload] control thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:28,568 | INFO     | [data] control thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:28,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 20:38:33] 2026-01-24 19:37:28,983 | INFO     | [job] control thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,000 | INFO     | [job] validate thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,102 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,102 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,173 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,342 | INFO     | [data] copytool_in thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,446 | INFO     | [payload] failed_post thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,501 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:29,840 | INFO     | [data] copytool_out thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:32,704 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 20:38:33] 2026-01-24 19:37:57,615 | INFO     | PID=1048773 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-24 20:38:33] 2026-01-24 19:37:57,616 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 20:38:33] 2026-01-24 19:37:57,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 20:38:33] 2026-01-24 19:37:57,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 20:38:33] 2026-01-24 19:38:26,269 | INFO     | [monitor] cgroup control has ended
[2026-01-24 20:38:33] 2026-01-24 19:38:28,055 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443194230592)>', '<ExcThread(monitor, started 140442360321792)>']
[2026-01-24 20:38:33] 2026-01-24 19:38:28,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 20:38:33] 2026-01-24 19:38:28,781 | INFO     | [monitor] control thread has ended
[2026-01-24 20:38:33] 2026-01-24 19:38:33,059 | INFO     | all workflow threads have been joined
[2026-01-24 20:38:33] 2026-01-24 19:38:33,059 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 20:38:33] 2026-01-24 19:38:33,059 | INFO     | traces error code: 0
[2026-01-24 20:38:33] 2026-01-24 19:38:33,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 20:38:33] 2026-01-24 19:38:33,141 [wrapper] ==== pilot stdout END ====
[2026-01-24 20:38:33] 2026-01-24 19:38:33,146 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 20:38:33] 2026-01-24 19:38:33,150 [wrapper] pilotpid: 1048773
[2026-01-24 20:38:33] 2026-01-24 19:38:33,154 [wrapper] Pilot exit status: 0
[2026-01-24 20:38:33] 2026-01-24 19:38:33,166 [wrapper] pandaids: 6979415358
[2026-01-24 20:38:33] 2026-01-24 19:38:33,190 [wrapper] cleanup supervisor_pilot 1058572 1048774
[2026-01-24 20:38:33] 2026-01-24 19:38:33,194 [wrapper] Test setup, not cleaning
[2026-01-24 20:38:33] 2026-01-24 19:38:33,198 [wrapper] apfmon messages muted
[2026-01-24 20:38:33] 2026-01-24 19:38:33,201 [wrapper] ==== wrapper stdout END ====
[2026-01-24 20:38:33] 2026-01-24 19:38:33,205 [wrapper] ==== wrapper stderr END ====
[2026-01-24 20:38:33]  *** Error codes and diagnostics ***
[2026-01-24 20:38:33]     "exeErrorCode": 0,
[2026-01-24 20:38:33]     "exeErrorDiag": "",
[2026-01-24 20:38:33]     "pilotErrorCode": 0,
[2026-01-24 20:38:33]     "pilotErrorDiag": "",
[2026-01-24 20:38:33]  *** Listing of results directory ***
[2026-01-24 20:38:33] total 414656
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc    584422 Jan 23 12:33 pilot3.tar.gz
[2026-01-24 20:38:33] -rwx------ 1 boinc boinc     36322 Jan 23 12:40 runpilot2-wrapper.sh
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc      5111 Jan 23 12:40 queuedata.json
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc       100 Jan 24 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 20:38:33] -rwxr-xr-x 1 boinc boinc      7986 Jan 24 19:11 run_atlas
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc       105 Jan 24 19:11 job.xml
[2026-01-24 20:38:33] -rw-r--r-- 2 boinc boinc 250020119 Jan 24 19:11 EVNT.48314300._000002.pool.root.1
[2026-01-24 20:38:33] -rw-r--r-- 2 boinc boinc    597778 Jan 24 19:11 input.tar.gz
[2026-01-24 20:38:33] -rw-r--r-- 2 boinc boinc     15845 Jan 24 19:11 start_atlas.sh
[2026-01-24 20:38:33] drwxrwx--x 2 boinc boinc      4096 Jan 24 19:11 shared
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc         0 Jan 24 19:11 boinc_setup_complete
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc      6370 Jan 24 19:11 init_data.xml
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc         0 Jan 24 19:11 boinc_lockfile
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc      2641 Jan 24 19:11 pandaJob.out
[2026-01-24 20:38:33] -rw------- 1 boinc boinc   1004246 Jan 24 19:11 agis_schedconf.cvmfs.json
[2026-01-24 20:38:33] -rw------- 1 boinc boinc   1516246 Jan 24 19:11 agis_ddmendpoints.agis.ALL.json
[2026-01-24 20:38:33] -rw------- 1 boinc boinc       428 Jan 24 19:11 workernode_map.json
[2026-01-24 20:38:33] drwx------ 5 boinc boinc      4096 Jan 24 19:11 pilot3
[2026-01-24 20:38:33] -rw------- 1 boinc boinc 168620526 Jan 24 20:37 HITS.48314302._000029.pool.root.1
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc       529 Jan 24 20:37 boinc_task_state.xml
[2026-01-24 20:38:33] -rw------- 1 boinc boinc      1019 Jan 24 20:37 memory_monitor_summary.json
[2026-01-24 20:38:33] -rw------- 1 boinc boinc    261242 Jan 24 20:37 log.48314302._000029.job.log.tgz.1
[2026-01-24 20:38:33] -rw------- 1 boinc boinc      6303 Jan 24 20:37 heartbeat.json
[2026-01-24 20:38:33] -rw------- 1 boinc boinc        95 Jan 24 20:37 pilot_heartbeat.json
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc        27 Jan 24 20:38 wrapper_checkpoint.txt
[2026-01-24 20:38:33] -rw------- 1 boinc boinc      4748 Jan 24 20:38 pilotlog.txt
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc      8192 Jan 24 20:38 boinc_mmap_file
[2026-01-24 20:38:33] -rw------- 1 boinc boinc    754020 Jan 24 20:38 log.48314302._000029.job.log.1
[2026-01-24 20:38:33] -rw------- 1 boinc boinc       357 Jan 24 20:38 output.list
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc       620 Jan 24 20:38 runtime_log
[2026-01-24 20:38:33] -rw------- 1 boinc boinc   1034240 Jan 24 20:38 result.tar.gz
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc      8901 Jan 24 20:38 runtime_log.err
[2026-01-24 20:38:33] -rw------- 1 boinc boinc       658 Jan 24 20:38 HTpKDm3hU38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfyvKDmT7yA2m.diag
[2026-01-24 20:38:33] -rw-r--r-- 1 boinc boinc     10081 Jan 24 20:38 stderr.txt
[2026-01-24 20:38:33] HITS file was successfully produced:
[2026-01-24 20:38:33] -rw------- 1 boinc boinc 168620526 Jan 24 20:37 shared/HITS.pool.root.1
[2026-01-24 20:38:33]  *** Contents of shared directory: ***
[2026-01-24 20:38:33] total 410456
[2026-01-24 20:38:33] -rw-r--r-- 2 boinc boinc 250020119 Jan 24 19:11 ATLAS.root_0
[2026-01-24 20:38:33] -rw-r--r-- 2 boinc boinc    597778 Jan 24 19:11 input.tar.gz
[2026-01-24 20:38:33] -rw-r--r-- 2 boinc boinc     15845 Jan 24 19:11 start_atlas.sh
[2026-01-24 20:38:33] -rw------- 1 boinc boinc 168620526 Jan 24 20:37 HITS.pool.root.1
[2026-01-24 20:38:33] -rw------- 1 boinc boinc   1034240 Jan 24 20:38 result.tar.gz
20:38:34 (1044663): run_atlas exited; CPU time 19624.141585
20:38:34 (1044663): called boinc_finish(0)

</stderr_txt>
]]>

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