Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:12:34 (3072558): wrapper (7.7.26015): starting
15:12:34 (3072558): wrapper: running run_atlas (--nthreads 3)
[2026-01-24 15:12:34] Arguments: --nthreads 3
[2026-01-24 15:12:34] Threads: 3
[2026-01-24 15:12:34] Checking for CVMFS
[2026-01-24 15:12:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 15:12:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 15:12:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 15:12:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 15:12:34] 2.9.2.0 2965315 306 47588 155474 2 50 17295163 36864000 0 130560 0 115332 99.983 11008 30662 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-24 15:12:34] CVMFS is ok
[2026-01-24 15:12:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-24 15:12:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-24 15:12:34] Further information can be found at the LHC@home message board.
[2026-01-24 15:12:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 15:12:34] Checking for apptainer binary...
[2026-01-24 15:12:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 15:12:34] Running /usr/bin/apptainer --version
[2026-01-24 15:12:34] apptainer version 1.4.1-1.1
[2026-01-24 15:12:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 15:12:34] atlasA221b
[2026-01-24 15:12:34] apptainer works
[2026-01-24 15:12:35] Set ATHENA_PROC_NUMBER=3
[2026-01-24 15:12:35] Set ATHENA_CORE_NUMBER=3
[2026-01-24 15:12:35] Starting ATLAS job with PandaID=6980102582
[2026-01-24 15:12:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 16:51:25]  *** The last 200 lines of the pilot log: ***
[2026-01-24 16:51:26] 2026-01-24 15:50:12,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-24 16:51:26] 2026-01-24 15:50:12,558 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-24 16:51:26] 2026-01-24 15:50:12,558 | INFO     | job 6980102582 has completed (purged errors)
[2026-01-24 16:51:26] 2026-01-24 15:50:12,558 | INFO     | overall cleanup function is called
[2026-01-24 16:51:26] 2026-01-24 15:50:13,593 | INFO     | --- collectZombieJob: --- 10, [3081063]
[2026-01-24 16:51:26] 2026-01-24 15:50:13,593 | INFO     | zombie collector waiting for pid 3081063
[2026-01-24 16:51:26] 2026-01-24 15:50:13,593 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-24 16:51:26] 2026-01-24 15:50:13,593 | INFO     | collected zombie processes
[2026-01-24 16:51:26] 2026-01-24 15:50:13,593 | INFO     | will attempt to kill all subprocesses of pid=3081063
[2026-01-24 16:51:26] 2026-01-24 15:50:13,674 | INFO     | process IDs to be killed: [3081063] (in reverse order)
[2026-01-24 16:51:26] 2026-01-24 15:50:13,748 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 16:51:26] 2026-01-24 15:50:13,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 16:51:26] 2026-01-24 15:50:13,751 | INFO     | did not find any defunct processes belonging to 3081063
[2026-01-24 16:51:26] 2026-01-24 15:50:13,754 | INFO     | did not find any defunct processes belonging to 3081063
[2026-01-24 16:51:26] 2026-01-24 15:50:13,754 | INFO     | ready for new job
[2026-01-24 16:51:26] 2026-01-24 15:50:13,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 16:51:26] 2026-01-24 15:50:13,768 | INFO     | **************************************
[2026-01-24 16:51:26] 2026-01-24 15:50:13,768 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 16:51:26] 2026-01-24 15:50:13,769 | INFO     | **************************************
[2026-01-24 16:51:26] 2026-01-24 15:50:13,769 | INFO     | 
[2026-01-24 16:51:26] 2026-01-24 15:50:13,769 | INFO     | architecture information:
[2026-01-24 16:51:26] 2026-01-24 15:50:13,769 | INFO     | executing command: cat /etc/os-release
[2026-01-24 16:51:26] 2026-01-24 15:50:13,802 | INFO     | cat /etc/os-release:
[2026-01-24 16:51:26] NAME="CentOS Linux"
[2026-01-24 16:51:26] VERSION="7 (Core)"
[2026-01-24 16:51:26] ID="centos"
[2026-01-24 16:51:26] ID_LIKE="rhel fedora"
[2026-01-24 16:51:26] VERSION_ID="7"
[2026-01-24 16:51:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 16:51:26] ANSI_COLOR="0;31"
[2026-01-24 16:51:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 16:51:26] HOME_URL="https://www.centos.org/"
[2026-01-24 16:51:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 16:51:26] 
[2026-01-24 16:51:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 16:51:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 16:51:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 16:51:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 16:51:26] 
[2026-01-24 16:51:26] 2026-01-24 15:50:13,802 | INFO     | **************************************
[2026-01-24 16:51:26] 2026-01-24 15:50:14,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-24 16:51:26] 2026-01-24 15:50:14,315 | INFO     | sufficient remaining disk space (340410761216 B)
[2026-01-24 16:51:26] 2026-01-24 15:50:14,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 16:51:26] 2026-01-24 15:50:14,316 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 16:51:26] 2026-01-24 15:50:14,316 | INFO     | update_server=False
[2026-01-24 16:51:26] 2026-01-24 15:50:14,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 16:51:26] 2026-01-24 15:50:14,316 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 16:51:26] 2026-01-24 15:50:14,431 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-24 16:51:26] 2026-01-24 15:50:14,432 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-24 16:51:26] 2026-01-24 15:50:14,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 16:51:26] 2026-01-24 15:50:14,432 | INFO     | will abort loop
[2026-01-24 16:51:26] 2026-01-24 15:50:14,712 | INFO     | all data control threads have been joined
[2026-01-24 16:51:26] 2026-01-24 15:50:15,321 | INFO     | [job] retrieve thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:15,414 | INFO     | all payload control threads have been joined
[2026-01-24 16:51:26] 2026-01-24 15:50:15,437 | INFO     | [job] job monitor thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:15,526 | INFO     | all job control threads have been joined
[2026-01-24 16:51:26] 2026-01-24 15:50:15,718 | INFO     | [data] control thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:15,800 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:15,800 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:15,801 | INFO     | [data] copytool_in thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:15,802 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:16,000 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:16,054 | INFO     | [job] validate thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:16,321 | INFO     | [data] copytool_out thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:16,420 | INFO     | [payload] control thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:16,426 | INFO     | [payload] failed_post thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:16,532 | INFO     | [job] control thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:16,643 | INFO     | [payload] validate_post thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:17,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 16:51:26] 2026-01-24 15:50:17,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 16:51:26] 2026-01-24 15:50:18,191 | INFO     | [job] queue monitor thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:21,424 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 16:51:26] 2026-01-24 15:50:44,784 | INFO     | PID=3076607 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-24 16:51:26] 2026-01-24 15:50:44,785 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 16:51:26] 2026-01-24 15:50:44,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 16:51:26] 2026-01-24 15:50:44,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 16:51:26] 2026-01-24 15:50:54,410 | INFO     | [monitor] cgroup control has ended
[2026-01-24 16:51:26] 2026-01-24 15:50:54,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643110242112)>', '<ExcThread(monitor, started 139642389124864)>']
[2026-01-24 16:51:26] 2026-01-24 15:50:54,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 16:51:26] 2026-01-24 15:50:54,835 | INFO     | [monitor] control thread has ended
[2026-01-24 16:51:26] 2026-01-24 15:50:59,816 | INFO     | all workflow threads have been joined
[2026-01-24 16:51:26] 2026-01-24 15:50:59,817 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 16:51:26] 2026-01-24 15:50:59,818 | INFO     | traces error code: 0
[2026-01-24 16:51:26] 2026-01-24 15:50:59,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 16:51:26] 2026-01-24 15:51:00,118 [wrapper] ==== pilot stdout END ====
[2026-01-24 16:51:26] 2026-01-24 15:51:00,121 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 16:51:26] 2026-01-24 15:51:00,124 [wrapper] pilotpid: 3076607
[2026-01-24 16:51:26] 2026-01-24 15:51:00,127 [wrapper] Pilot exit status: 0
[2026-01-24 16:51:26] 2026-01-24 15:51:00,238 [wrapper] pandaids: 6980102582
[2026-01-24 16:51:26] 2026-01-24 15:51:00,264 [wrapper] cleanup supervisor_pilot 3118589 3076608
[2026-01-24 16:51:26] 2026-01-24 15:51:00,267 [wrapper] Test setup, not cleaning
[2026-01-24 16:51:26] 2026-01-24 15:51:00,270 [wrapper] apfmon messages muted
[2026-01-24 16:51:26] 2026-01-24 15:51:00,273 [wrapper] ==== wrapper stdout END ====
[2026-01-24 16:51:26] 2026-01-24 15:51:00,276 [wrapper] ==== wrapper stderr END ====
[2026-01-24 16:51:26]  *** Error codes and diagnostics ***
[2026-01-24 16:51:26]     "exeErrorCode": 0,
[2026-01-24 16:51:26]     "exeErrorDiag": "",
[2026-01-24 16:51:26]     "pilotErrorCode": 0,
[2026-01-24 16:51:26]     "pilotErrorDiag": "",
[2026-01-24 16:51:26]  *** Listing of results directory ***
[2026-01-24 16:51:26] total 671112
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc    584422 Jan 24 00:49 pilot3.tar.gz
[2026-01-24 16:51:26] -rwx------ 1 boinc boinc     36322 Jan 24 00:49 runpilot2-wrapper.sh
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc      5111 Jan 24 00:50 queuedata.json
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc       100 Jan 24 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 16:51:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 24 15:12 run_atlas
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc       105 Jan 24 15:12 job.xml
[2026-01-24 16:51:26] -rw-r--r-- 2 boinc boinc 498042530 Jan 24 15:12 EVNT.48310665._000164.pool.root.1
[2026-01-24 16:51:26] drwxrwx--x 2 boinc boinc      4096 Jan 24 15:12 shared
[2026-01-24 16:51:26] -rw-r--r-- 2 boinc boinc    597762 Jan 24 15:12 input.tar.gz
[2026-01-24 16:51:26] -rw-r--r-- 2 boinc boinc     15845 Jan 24 15:12 start_atlas.sh
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc         0 Jan 24 15:12 boinc_setup_complete
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc      6199 Jan 24 15:12 init_data.xml
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc         0 Jan 24 15:12 boinc_lockfile
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc      2519 Jan 24 15:12 pandaJob.out
[2026-01-24 16:51:26] -rw------- 1 boinc boinc   1004246 Jan 24 15:12 agis_schedconf.cvmfs.json
[2026-01-24 16:51:26] -rw------- 1 boinc boinc   1516246 Jan 24 15:12 agis_ddmendpoints.agis.ALL.json
[2026-01-24 16:51:26] -rw------- 1 boinc boinc       423 Jan 24 15:12 workernode_map.json
[2026-01-24 16:51:26] drwx------ 5 boinc boinc      4096 Jan 24 15:12 pilot3
[2026-01-24 16:51:26] -rw------- 1 boinc boinc 183037938 Jan 24 16:49 HITS.48310670._008169.pool.root.1
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc       530 Jan 24 16:49 boinc_task_state.xml
[2026-01-24 16:51:26] -rw------- 1 boinc boinc      1055 Jan 24 16:50 memory_monitor_summary.json
[2026-01-24 16:51:26] -rw------- 1 boinc boinc    277874 Jan 24 16:50 log.48310670._008169.job.log.tgz.1
[2026-01-24 16:51:26] -rw------- 1 boinc boinc      6372 Jan 24 16:50 heartbeat.json
[2026-01-24 16:51:26] -rw------- 1 boinc boinc        96 Jan 24 16:50 pilot_heartbeat.json
[2026-01-24 16:51:26] -rw------- 1 boinc boinc      4934 Jan 24 16:50 pilotlog.txt
[2026-01-24 16:51:26] -rw------- 1 boinc boinc    827036 Jan 24 16:51 log.48310670._008169.job.log.1
[2026-01-24 16:51:26] -rw------- 1 boinc boinc       357 Jan 24 16:51 output.list
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc       620 Jan 24 16:51 runtime_log
[2026-01-24 16:51:26] -rw------- 1 boinc boinc   1126400 Jan 24 16:51 result.tar.gz
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc      8916 Jan 24 16:51 runtime_log.err
[2026-01-24 16:51:26] -rw------- 1 boinc boinc       669 Jan 24 16:51 d1iNDmH5f38n9Rq4apOajLDm4fhM0noT9bVo0NGKDm87wKDmwGoKSo.diag
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc      8192 Jan 24 16:51 boinc_mmap_file
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc        27 Jan 24 16:51 wrapper_checkpoint.txt
[2026-01-24 16:51:26] -rw-r--r-- 1 boinc boinc     11244 Jan 24 16:51 stderr.txt
[2026-01-24 16:51:26] HITS file was successfully produced:
[2026-01-24 16:51:26] -rw------- 1 boinc boinc 183037938 Jan 24 16:49 shared/HITS.pool.root.1
[2026-01-24 16:51:26]  *** Contents of shared directory: ***
[2026-01-24 16:51:26] total 666828
[2026-01-24 16:51:26] -rw-r--r-- 2 boinc boinc 498042530 Jan 24 15:12 ATLAS.root_0
[2026-01-24 16:51:26] -rw-r--r-- 2 boinc boinc    597762 Jan 24 15:12 input.tar.gz
[2026-01-24 16:51:26] -rw-r--r-- 2 boinc boinc     15845 Jan 24 15:12 start_atlas.sh
[2026-01-24 16:51:26] -rw------- 1 boinc boinc 183037938 Jan 24 16:49 HITS.pool.root.1
[2026-01-24 16:51:26] -rw------- 1 boinc boinc   1126400 Jan 24 16:51 result.tar.gz
16:51:27 (3072558): run_atlas exited; CPU time 16008.084530
16:51:27 (3072558): called boinc_finish(0)

</stderr_txt>
]]>

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