Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:08 (838636): wrapper (7.7.26015): starting
10:02:08 (838636): wrapper: running run_atlas (--nthreads 4)
[2026-01-24 10:02:08] Arguments: --nthreads 4
[2026-01-24 10:02:08] Threads: 4
[2026-01-24 10:02:08] Checking for CVMFS
[2026-01-24 10:02:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 10:02:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 10:02:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 10:02:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 10:02:09] 2.9.2.0 3061 4449 98312 155466 2 50 22765004 36864000 0 130560 0 2336406 99.991 112905 9269 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-24 10:02:09] CVMFS is ok
[2026-01-24 10:02:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-24 10:02:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-24 10:02:09] Further information can be found at the LHC@home message board.
[2026-01-24 10:02:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 10:02:09] Checking for apptainer binary...
[2026-01-24 10:02:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 10:02:09] Running /usr/bin/apptainer --version
[2026-01-24 10:02:09] apptainer version 1.4.1-1.1
[2026-01-24 10:02:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 10:02:09] thA325
[2026-01-24 10:02:09] apptainer works
[2026-01-24 10:02:09] Set ATHENA_PROC_NUMBER=4
[2026-01-24 10:02:09] Set ATHENA_CORE_NUMBER=4
[2026-01-24 10:02:09] Starting ATLAS job with PandaID=6979139676
[2026-01-24 10:02:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 11:11:31]  *** The last 200 lines of the pilot log: ***
[2026-01-24 11:11:31] 2026-01-24 10:10:39,886 | INFO     | all data control threads have been joined
[2026-01-24 11:11:31] 2026-01-24 10:10:39,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 11:11:31] 2026-01-24 10:10:40,007 | INFO     | [job] retrieve thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,007 | INFO     | [job] queue monitor thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,019 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,052 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,108 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,239 | INFO     | all payload control threads have been joined
[2026-01-24 11:11:31] 2026-01-24 10:10:40,277 | INFO     | [data] copytool_in thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,345 | INFO     | [payload] validate_post thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,745 | INFO     | [job] control thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,892 | INFO     | [data] control thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:40,966 | INFO     | [payload] failed_post thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:41,245 | INFO     | [payload] control thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:41,399 | INFO     | [job] validate thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:41,542 | WARNING  | process 847270 can no longer be monitored (due to stat problems) - aborting
[2026-01-24 11:11:31] 2026-01-24 10:10:41,579 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 11:11:31] 2026-01-24 10:10:41,579 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 11:11:31] 2026-01-24 10:10:41,580 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-24 11:11:31] 2026-01-24 10:10:41,580 | WARNING  | maxPSS not found in memory monitor output
[2026-01-24 11:11:31] 2026-01-24 10:10:41,580 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6979139676/payload.stdout) since it has not been created yet
[2026-01-24 11:11:31] 2026-01-24 10:10:41,580 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-24 11:11:31] 2026-01-24 10:10:41,593 | INFO     | sufficient remaining disk space (234080960512 B)
[2026-01-24 11:11:31] 2026-01-24 10:10:41,593 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-24 11:11:31] 2026-01-24 10:10:41,593 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6979139676/HITS.48299581._000520.pool.root.1 since it does not exist
[2026-01-24 11:11:31] 2026-01-24 10:10:41,639 | INFO     | number of running child processes to parent process 847270: 1
[2026-01-24 11:11:31] 2026-01-24 10:10:41,640 | INFO     | maximum number of monitored processes: 6
[2026-01-24 11:11:31] 2026-01-24 10:10:41,640 | INFO     | aborting job monitoring since job object (job id=6979139676) has expired
[2026-01-24 11:11:31] 2026-01-24 10:10:41,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 11:11:31] 2026-01-24 10:10:41,640 | INFO     | will abort loop
[2026-01-24 11:11:31] 2026-01-24 10:10:41,980 | INFO     | [data] copytool_out thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:42,645 | INFO     | [job] job monitor thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:43,009 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:10:43,038 | INFO     | job.realtimelogging is not enabled
[2026-01-24 11:11:31] 2026-01-24 10:10:44,043 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 11:11:31] 2026-01-24 10:11:09,847 | INFO     | PID=842755 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-24 11:11:31] 2026-01-24 10:11:09,848 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 11:11:31] 2026-01-24 10:11:09,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 11:11:31] 2026-01-24 10:11:09,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 11:11:31] 2026-01-24 10:11:25,224 | INFO     | [monitor] cgroup control has ended
[2026-01-24 11:11:31] 2026-01-24 10:11:26,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864747775808)>', '<ExcThread(monitor, started 139863512831744)>']
[2026-01-24 11:11:31] 2026-01-24 10:11:26,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 11:11:31] 2026-01-24 10:11:26,939 | INFO     | [monitor] control thread has ended
[2026-01-24 11:11:31] 2026-01-24 10:11:31,236 | INFO     | all workflow threads have been joined
[2026-01-24 11:11:31] 2026-01-24 10:11:31,236 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 11:11:31] 2026-01-24 10:11:31,237 | INFO     | traces error code: 0
[2026-01-24 11:11:31] 2026-01-24 10:11:31,237 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 11:11:31] 2026-01-24 10:11:31,305 [wrapper] ==== pilot stdout END ====
[2026-01-24 11:11:31] 2026-01-24 10:11:31,309 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 11:11:31] 2026-01-24 10:11:31,312 [wrapper] pilotpid: 842755
[2026-01-24 11:11:31] 2026-01-24 10:11:31,316 [wrapper] Pilot exit status: 0
[2026-01-24 11:11:31] 2026-01-24 10:11:31,327 [wrapper] pandaids: 6979139676
[2026-01-24 11:11:31] 2026-01-24 10:11:31,350 [wrapper] cleanup supervisor_pilot  853313 842756
[2026-01-24 11:11:31] 2026-01-24 10:11:31,354 [wrapper] Test setup, not cleaning
[2026-01-24 11:11:31] 2026-01-24 10:11:31,357 [wrapper] apfmon messages muted
[2026-01-24 11:11:31] 2026-01-24 10:11:31,360 [wrapper] ==== wrapper stdout END ====
[2026-01-24 11:11:31] 2026-01-24 10:11:31,364 [wrapper] ==== wrapper stderr END ====
[2026-01-24 11:11:31]  *** Error codes and diagnostics ***
[2026-01-24 11:11:31]     "exeErrorCode": 0,
[2026-01-24 11:11:31]     "exeErrorDiag": "",
[2026-01-24 11:11:31]     "pilotErrorCode": 0,
[2026-01-24 11:11:31]     "pilotErrorDiag": "",
[2026-01-24 11:11:31]  *** Listing of results directory ***
[2026-01-24 11:11:31] total 436132
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc      5111 Jan 23 16:38 queuedata.json
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc    584422 Jan 23 16:38 pilot3.tar.gz
[2026-01-24 11:11:31] -rwx------ 1 boinc boinc     36322 Jan 23 16:38 runpilot2-wrapper.sh
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc       100 Jan 24 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 11:11:31] -rwxr-xr-x 1 boinc boinc      7986 Jan 24 10:02 run_atlas
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc       105 Jan 24 10:02 job.xml
[2026-01-24 11:11:31] -rw-r--r-- 2 boinc boinc 258848925 Jan 24 10:02 EVNT.48299579._000009.pool.root.1
[2026-01-24 11:11:31] -rw-r--r-- 2 boinc boinc    597793 Jan 24 10:02 input.tar.gz
[2026-01-24 11:11:31] -rw-r--r-- 2 boinc boinc     15845 Jan 24 10:02 start_atlas.sh
[2026-01-24 11:11:31] drwxrwx--x 2 boinc boinc      4096 Jan 24 10:02 shared
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc         0 Jan 24 10:02 boinc_setup_complete
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc      6369 Jan 24 10:02 init_data.xml
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc         0 Jan 24 10:02 boinc_lockfile
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc      2632 Jan 24 10:02 pandaJob.out
[2026-01-24 11:11:31] -rw------- 1 boinc boinc   1004246 Jan 24 10:02 agis_schedconf.cvmfs.json
[2026-01-24 11:11:31] -rw------- 1 boinc boinc   1516246 Jan 24 10:02 agis_ddmendpoints.agis.ALL.json
[2026-01-24 11:11:31] -rw------- 1 boinc boinc       420 Jan 24 10:02 workernode_map.json
[2026-01-24 11:11:31] drwx------ 5 boinc boinc      4096 Jan 24 10:02 pilot3
[2026-01-24 11:11:31] -rw------- 1 boinc boinc 182115262 Jan 24 11:10 HITS.48299581._000520.pool.root.1
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc       529 Jan 24 11:10 boinc_task_state.xml
[2026-01-24 11:11:31] -rw------- 1 boinc boinc      1036 Jan 24 11:10 memory_monitor_summary.json
[2026-01-24 11:11:31] -rw------- 1 boinc boinc    245439 Jan 24 11:10 log.48299581._000520.job.log.tgz.1
[2026-01-24 11:11:31] -rw------- 1 boinc boinc      6294 Jan 24 11:10 heartbeat.json
[2026-01-24 11:11:31] -rw------- 1 boinc boinc        95 Jan 24 11:11 pilot_heartbeat.json
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc        27 Jan 24 11:11 wrapper_checkpoint.txt
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc      8192 Jan 24 11:11 boinc_mmap_file
[2026-01-24 11:11:31] -rw------- 1 boinc boinc      6318 Jan 24 11:11 pilotlog.txt
[2026-01-24 11:11:31] -rw------- 1 boinc boinc    609562 Jan 24 11:11 log.48299581._000520.job.log.1
[2026-01-24 11:11:31] -rw------- 1 boinc boinc       357 Jan 24 11:11 output.list
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc       620 Jan 24 11:11 runtime_log
[2026-01-24 11:11:31] -rw------- 1 boinc boinc    870400 Jan 24 11:11 result.tar.gz
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc      8896 Jan 24 11:11 runtime_log.err
[2026-01-24 11:11:31] -rw------- 1 boinc boinc       657 Jan 24 11:11 2EgLDmRQY38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIw2KDmVYbVSm.diag
[2026-01-24 11:11:31] -rw-r--r-- 1 boinc boinc      8705 Jan 24 11:11 stderr.txt
[2026-01-24 11:11:31] HITS file was successfully produced:
[2026-01-24 11:11:31] -rw------- 1 boinc boinc 182115262 Jan 24 11:10 shared/HITS.pool.root.1
[2026-01-24 11:11:31]  *** Contents of shared directory: ***
[2026-01-24 11:11:31] total 432092
[2026-01-24 11:11:31] -rw-r--r-- 2 boinc boinc 258848925 Jan 24 10:02 ATLAS.root_0
[2026-01-24 11:11:31] -rw-r--r-- 2 boinc boinc    597793 Jan 24 10:02 input.tar.gz
[2026-01-24 11:11:31] -rw-r--r-- 2 boinc boinc     15845 Jan 24 10:02 start_atlas.sh
[2026-01-24 11:11:31] -rw------- 1 boinc boinc 182115262 Jan 24 11:10 HITS.pool.root.1
[2026-01-24 11:11:31] -rw------- 1 boinc boinc    870400 Jan 24 11:11 result.tar.gz
11:11:53 (838636): run_atlas exited; CPU time 15472.064536
11:11:53 (838636): called boinc_finish(0)

</stderr_txt>
]]>

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