Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
00:14:30 (2010239): wrapper (7.7.26015): starting
00:14:30 (2010239): wrapper: running run_atlas (--nthreads 4)
[2026-01-25 00:14:30] Arguments: --nthreads 4
[2026-01-25 00:14:30] Threads: 4
[2026-01-25 00:14:30] Checking for CVMFS
[2026-01-25 00:14:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-25 00:14:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-25 00:14:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-25 00:14:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-25 00:14:30] 2.13.3.0 80730 7135 48192 155487 3 9 19975674 33554432 0 130560 0 3622258 99.989 215884 206 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-25 00:14:30] CVMFS is ok
[2026-01-25 00:14:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-25 00:14:30] Checking for apptainer binary...
[2026-01-25 00:14:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-25 00:14:30] Running /usr/bin/apptainer --version
[2026-01-25 00:14:31] apptainer version 1.4.5
[2026-01-25 00:14:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-25 00:14:31] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-25 00:14:31] apptainer works
[2026-01-25 00:14:31] Set ATHENA_PROC_NUMBER=4
[2026-01-25 00:14:31] Set ATHENA_CORE_NUMBER=4
[2026-01-25 00:14:31] Starting ATLAS job with PandaID=6979401931
[2026-01-25 00:14:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-25 01:18:52]  *** The last 200 lines of the pilot log: ***
[2026-01-25 01:18:52]  domain=
[2026-01-25 01:18:52]  filesize=269684
[2026-01-25 01:18:52]  filetype=log
[2026-01-25 01:18:52]  guid=430e527b-db5f-480b-b1ef-61528fe3b7d8
[2026-01-25 01:18:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-25 01:18:52]  is_altstaged=None
[2026-01-25 01:18:52]  is_tar=False
[2026-01-25 01:18:52]  lfn=log.48317892._000474.job.log.tgz.1
[2026-01-25 01:18:52]  mtime=0
[2026-01-25 01:18:52]  protocol_id=None
[2026-01-25 01:18:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-25 01:18:52]  replicas=None
[2026-01-25 01:18:52]  scope=mc23_13p6TeV
[2026-01-25 01:18:52]  status=None
[2026-01-25 01:18:52]  status_code=0
[2026-01-25 01:18:52]  storage_token=
[2026-01-25 01:18:52]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6979401931/log.48317892._000474.job.log.tgz.1
[2026-01-25 01:18:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/eb/log.48317892._000474.job.log.tgz.1
[2026-01-25 01:18:52]  workdir=None
[2026-01-25 01:18:52] ]
[2026-01-25 01:18:52] 2026-01-24 23:18:01,994 | INFO     | transferring file log.48317892._000474.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6979401931/log.48317892._000474.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-25 01:18:52] 2026-01-24 23:18:01,994 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6979401931/log.48317892._000474.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48317892._000474.job
[2026-01-25 01:18:52] 2026-01-24 23:18:02,003 | INFO     | adding to output.list: log.48317892._000474.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/eb/log.48317892._000474.job.log.tg
[2026-01-25 01:18:52] 2026-01-24 23:18:02,003 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-25 01:18:52] 2026-01-24 23:18:02,004 | INFO     | summary of transferred files:
[2026-01-25 01:18:52] 2026-01-24 23:18:02,004 | INFO     |  -- lfn=log.48317892._000474.job.log.tgz.1, status_code=0, status=transferred
[2026-01-25 01:18:52] 2026-01-24 23:18:02,004 | INFO     | stage-out finished correctly
[2026-01-25 01:18:52] 2026-01-24 23:18:02,627 | INFO     | monitor loop #291: job 0:6979401931 is in state 'finished'
[2026-01-25 01:18:52] 2026-01-24 23:18:02,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-25 01:18:52] 2026-01-24 23:18:03,213 | INFO     | time since job start (3802s) is within the limit (349056.0s)
[2026-01-25 01:18:52] 2026-01-24 23:18:03,430 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-25 01:18:52] 2026-01-24 23:18:04,130 | INFO     | job 6979401931 has state=finished
[2026-01-25 01:18:52] 2026-01-24 23:18:04,130 | INFO     | preparing for final server update for job 6979401931 in state='finished'
[2026-01-25 01:18:52] 2026-01-24 23:18:04,130 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6979401931/jobReport.json
[2026-01-25 01:18:52] 2026-01-24 23:18:04,131 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-25 01:18:52] 2026-01-24 23:18:04,131 | INFO     | this job has now completed (state=finished)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,131 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,131 | INFO     | log transfer has been attempted: DONE
[2026-01-25 01:18:52] 2026-01-24 23:18:04,131 | INFO     | job 6979401931 has finished - writing final server update
[2026-01-25 01:18:52] 2026-01-24 23:18:04,131 | INFO     | total number of processed events: 400 (read)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,133 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6979401931/memory_monitor_summary.json (trf name=prmon)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,133 | INFO     | extracted standard info from prmon json
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | INFO     | extracted standard memory fields from prmon json
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | INFO     | fitting pss+swap vs Time
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | INFO     | sum of square deviations: 51573060.0
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | INFO     | sum of deviations: -5842658384.999999
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | INFO     | mean x: 1769294849.0
[2026-01-25 01:18:52] 2026-01-24 23:18:04,134 | INFO     | mean y: 2711128.981818182
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | intersect: 200444286343.77722
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | chi2: 0.11958341370438404
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | current memory leak: -113.29 B/s (using 55 data points, chi2=0.12)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | could have reported an average CPU frequency of 3688 MHz (6 samples)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | ..............................
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . Timing measurements:
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . get job = 0 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . initial setup = 3 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . payload setup = 2 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . stage-in = 0 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . payload execution = 3783 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . stage-out = 0 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | . log creation = 0 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,135 | INFO     | ..............................
[2026-01-25 01:18:52] 2026-01-24 23:18:04,164 | INFO     | 
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | job summary report
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | --------------------------------------------------
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | PanDA job id: 6979401931
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | task id: 48317892
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | errors: (none)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | pilot state: finished 
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | transexitcode: 0
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | exeerrorcode: 0
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | exeerrordiag: 
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | exitcode: 0
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | exitmsg: OK
[2026-01-25 01:18:52] 2026-01-24 23:18:04,165 | INFO     | cpuconsumptiontime: 14217 s
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | nevents: 400
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | neventsw: 0
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | pid: 2018886
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | pgrp: 2018886
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | corecount: 4
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | event service: False
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | sizes: {0: 2284233, 11: 2284233, 3789: 2310177, 3790: 2319230, 3791: 2319230, 3792: 2319424}
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | --------------------------------------------------
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | 
[2026-01-25 01:18:52] 2026-01-24 23:18:04,166 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,177 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,177 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,177 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-25 01:18:52] 2026-01-24 23:18:04,177 | INFO     | job 6979401931 has completed (purged errors)
[2026-01-25 01:18:52] 2026-01-24 23:18:04,177 | INFO     | overall cleanup function is called
[2026-01-25 01:18:52] 2026-01-24 23:18:05,184 | INFO     | --- collectZombieJob: --- 10, [2018886]
[2026-01-25 01:18:52] 2026-01-24 23:18:05,184 | INFO     | zombie collector waiting for pid 2018886
[2026-01-25 01:18:52] 2026-01-24 23:18:05,184 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-25 01:18:52] 2026-01-24 23:18:05,184 | INFO     | collected zombie processes
[2026-01-25 01:18:52] 2026-01-24 23:18:05,184 | INFO     | will attempt to kill all subprocesses of pid=2018886
[2026-01-25 01:18:52] 2026-01-24 23:18:05,284 | INFO     | process IDs to be killed: [2018886] (in reverse order)
[2026-01-25 01:18:52] 2026-01-24 23:18:05,314 | WARNING  | found no corresponding commands to process id(s)
[2026-01-25 01:18:52] 2026-01-24 23:18:05,315 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-25 01:18:52] 2026-01-24 23:18:05,317 | INFO     | did not find any defunct processes belonging to 2018886
[2026-01-25 01:18:52] 2026-01-24 23:18:05,319 | INFO     | did not find any defunct processes belonging to 2018886
[2026-01-25 01:18:52] 2026-01-24 23:18:05,319 | INFO     | ready for new job
[2026-01-25 01:18:52] 2026-01-24 23:18:05,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-25 01:18:52] 2026-01-24 23:18:05,320 | INFO     | **************************************
[2026-01-25 01:18:52] 2026-01-24 23:18:05,320 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-25 01:18:52] 2026-01-24 23:18:05,320 | INFO     | **************************************
[2026-01-25 01:18:52] 2026-01-24 23:18:05,320 | INFO     | 
[2026-01-25 01:18:52] 2026-01-24 23:18:05,321 | INFO     | architecture information:
[2026-01-25 01:18:52] 2026-01-24 23:18:05,321 | INFO     | executing command: cat /etc/os-release
[2026-01-25 01:18:52] 2026-01-24 23:18:05,328 | INFO     | cat /etc/os-release:
[2026-01-25 01:18:52] NAME="CentOS Linux"
[2026-01-25 01:18:52] VERSION="7 (Core)"
[2026-01-25 01:18:52] ID="centos"
[2026-01-25 01:18:52] ID_LIKE="rhel fedora"
[2026-01-25 01:18:52] VERSION_ID="7"
[2026-01-25 01:18:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-25 01:18:52] ANSI_COLOR="0;31"
[2026-01-25 01:18:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-25 01:18:52] HOME_URL="https://www.centos.org/"
[2026-01-25 01:18:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-25 01:18:52] 
[2026-01-25 01:18:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-25 01:18:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-25 01:18:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-25 01:18:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-25 01:18:52] 
[2026-01-25 01:18:52] 2026-01-24 23:18:05,328 | INFO     | **************************************
[2026-01-25 01:18:52] 2026-01-24 23:18:05,831 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-25 01:18:52] 2026-01-24 23:18:05,838 | INFO     | sufficient remaining disk space (70448578560 B)
[2026-01-25 01:18:52] 2026-01-24 23:18:05,838 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-25 01:18:52] 2026-01-24 23:18:05,838 | INFO     | current server update state: UPDATING_FINAL
[2026-01-25 01:18:52] 2026-01-24 23:18:05,838 | INFO     | update_server=False
[2026-01-25 01:18:52] 2026-01-24 23:18:05,838 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-25 01:18:52] 2026-01-24 23:18:05,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-25 01:18:52] 2026-01-24 23:18:05,839 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-25 01:18:52] 2026-01-24 23:18:05,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-25 01:18:52] 2026-01-24 23:18:06,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-25 01:18:52] 2026-01-24 23:18:06,135 | INFO     | aborting loop
[2026-01-25 01:18:52] 2026-01-24 23:18:06,282 | INFO     | all data control threads have been joined
[2026-01-25 01:18:52] 2026-01-24 23:18:06,844 | INFO     | [job] retrieve thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:06,845 | INFO     | [job] queue monitor thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:06,870 | INFO     | [payload] execute_payloads thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:07,035 | INFO     | all job control threads have been joined
[2026-01-25 01:18:52] 2026-01-24 23:18:07,059 | INFO     | [payload] failed_post thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:07,108 | INFO     | all payload control threads have been joined
[2026-01-25 01:18:52] 2026-01-24 23:18:07,140 | INFO     | [job] job monitor thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:07,287 | INFO     | [data] control thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:07,563 | INFO     | [payload] validate_post thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:07,844 | INFO     | [data] copytool_out thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:08,018 | INFO     | [job] validate thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:08,040 | INFO     | [job] control thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:08,085 | INFO     | [job] create_data_payload thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:08,113 | INFO     | [payload] control thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:08,158 | INFO     | [payload] validate_pre thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:08,305 | INFO     | [data] copytool_in thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:09,844 | INFO     | [data] queue_monitor thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:16,322 | INFO     | job.realtimelogging is not enabled
[2026-01-25 01:18:52] 2026-01-24 23:18:17,327 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-25 01:18:52] 2026-01-24 23:18:36,396 | INFO     | PID=2014072 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-25 01:18:52] 2026-01-24 23:18:36,396 | INFO     | found 0 job(s) in 20 queues
[2026-01-25 01:18:52] 2026-01-24 23:18:36,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-25 01:18:52] 2026-01-24 23:18:36,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-25 01:18:52] 2026-01-24 23:18:46,657 | INFO     | [monitor] cgroup control has ended
[2026-01-25 01:18:52] 2026-01-24 23:18:47,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430214932288)>', '<ExcThread(monitor, started 140429584492288)>']
[2026-01-25 01:18:52] 2026-01-24 23:18:47,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-25 01:18:52] 2026-01-24 23:18:47,451 | INFO     | [monitor] control thread has ended
[2026-01-25 01:18:52] 2026-01-24 23:18:52,085 | INFO     | all workflow threads have been joined
[2026-01-25 01:18:52] 2026-01-24 23:18:52,085 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-25 01:18:52] 2026-01-24 23:18:52,085 | INFO     | traces error code: 0
[2026-01-25 01:18:52] 2026-01-24 23:18:52,085 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-25 01:18:52] 2026-01-24 23:18:52,150 [wrapper] ==== pilot stdout END ====
[2026-01-25 01:18:52] 2026-01-24 23:18:52,152 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-25 01:18:52] 2026-01-24 23:18:52,154 [wrapper] pilotpid: 2014072
[2026-01-25 01:18:52] 2026-01-24 23:18:52,155 [wrapper] Pilot exit status: 0
[2026-01-25 01:18:52] 2026-01-24 23:18:52,160 [wrapper] pandaids: 6979401931
[2026-01-25 01:18:52] 2026-01-24 23:18:52,184 [wrapper] cleanup supervisor_pilot 2062971 2014073
[2026-01-25 01:18:52] 2026-01-24 23:18:52,186 [wrapper] Test setup, not cleaning
[2026-01-25 01:18:52] 2026-01-24 23:18:52,187 [wrapper] apfmon messages muted
[2026-01-25 01:18:52] 2026-01-24 23:18:52,189 [wrapper] ==== wrapper stdout END ====
[2026-01-25 01:18:52] 2026-01-24 23:18:52,190 [wrapper] ==== wrapper stderr END ====
[2026-01-25 01:18:52]  *** Error codes and diagnostics ***
[2026-01-25 01:18:52]     "exeErrorCode": 0,
[2026-01-25 01:18:52]     "exeErrorDiag": "",
[2026-01-25 01:18:52]     "pilotErrorCode": 0,
[2026-01-25 01:18:52]     "pilotErrorDiag": "",
[2026-01-25 01:18:52]  *** Listing of results directory ***
[2026-01-25 01:18:52] total 671740
[2026-01-25 01:18:52] -rw-r--r-- 1 ek ek    584422 Jan 23 19:42 pilot3.tar.gz
[2026-01-25 01:18:52] -rwx------ 1 ek ek     36322 Jan 23 19:46 runpilot2-wrapper.sh
[2026-01-25 01:18:52] -rw-r--r-- 1 ek ek      5111 Jan 23 19:49 queuedata.json
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek       100 Jan 25 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-25 01:18:52] -rwxr-xr-x 1 ek ek      7986 Jan 25 00:14 run_atlas
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek       105 Jan 25 00:14 job.xml
[2026-01-25 01:18:52] -rw-r--r-- 2 ek ek 498142598 Jan 25 00:14 EVNT.48317889._000008.pool.root.1
[2026-01-25 01:18:52] drwxrwx--x 2 ek ek      4096 Jan 25 00:14 shared
[2026-01-25 01:18:52] -rw-r--r-- 2 ek ek    597743 Jan 25 00:14 input.tar.gz
[2026-01-25 01:18:52] -rw-r--r-- 2 ek ek     15845 Jan 25 00:14 start_atlas.sh
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek         0 Jan 25 00:14 boinc_setup_complete
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek      9841 Jan 25 00:14 init_data.xml
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek         0 Jan 25 00:14 boinc_lockfile
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek      2518 Jan 25 00:14 pandaJob.out
[2026-01-25 01:18:52] -rw------- 1 ek ek        50 Jan 25 00:14 setup.sh.local
[2026-01-25 01:18:52] -rw------- 1 ek ek   1004246 Jan 25 00:14 agis_schedconf.cvmfs.json
[2026-01-25 01:18:52] -rw------- 1 ek ek   1516246 Jan 25 00:14 agis_ddmendpoints.agis.ALL.json
[2026-01-25 01:18:52] -rw------- 1 ek ek       433 Jan 25 00:14 workernode_map.json
[2026-01-25 01:18:52] drwx------ 5 ek ek      4096 Jan 25 00:14 pilot3
[2026-01-25 01:18:52] -rw------- 1 ek ek 184102370 Jan 25 01:17 HITS.48317892._000474.pool.root.1
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek       530 Jan 25 01:17 boinc_task_state.xml
[2026-01-25 01:18:52] -rw------- 1 ek ek      1054 Jan 25 01:17 memory_monitor_summary.json
[2026-01-25 01:18:52] -rw------- 1 ek ek    269684 Jan 25 01:18 log.48317892._000474.job.log.tgz.1
[2026-01-25 01:18:52] -rw------- 1 ek ek      6360 Jan 25 01:18 heartbeat.json
[2026-01-25 01:18:52] -rw------- 1 ek ek        95 Jan 25 01:18 pilot_heartbeat.json
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek        27 Jan 25 01:18 wrapper_checkpoint.txt
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek      8192 Jan 25 01:18 boinc_mmap_file
[2026-01-25 01:18:52] -rw------- 1 ek ek      4816 Jan 25 01:18 pilotlog.txt
[2026-01-25 01:18:52] -rw------- 1 ek ek    567534 Jan 25 01:18 log.48317892._000474.job.log.1
[2026-01-25 01:18:52] -rw------- 1 ek ek       357 Jan 25 01:18 output.list
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek       620 Jan 25 01:18 runtime_log
[2026-01-25 01:18:52] -rw------- 1 ek ek    849920 Jan 25 01:18 result.tar.gz
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek      9501 Jan 25 01:18 runtime_log.err
[2026-01-25 01:18:52] -rw------- 1 ek ek       667 Jan 25 01:18 3IFLDmmPa38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJgwKDmeYw6Vm.diag
[2026-01-25 01:18:52] -rw-rw-r-- 1 ek ek     20950 Jan 25 01:18 stderr.txt
[2026-01-25 01:18:52] HITS file was successfully produced:
[2026-01-25 01:18:52] -rw------- 1 ek ek 184102370 Jan 25 01:17 shared/HITS.pool.root.1
[2026-01-25 01:18:52]  *** Contents of shared directory: ***
[2026-01-25 01:18:52] total 667696
[2026-01-25 01:18:52] -rw-r--r-- 2 ek ek 498142598 Jan 25 00:14 ATLAS.root_0
[2026-01-25 01:18:52] -rw-r--r-- 2 ek ek    597743 Jan 25 00:14 input.tar.gz
[2026-01-25 01:18:52] -rw-r--r-- 2 ek ek     15845 Jan 25 00:14 start_atlas.sh
[2026-01-25 01:18:52] -rw------- 1 ek ek 184102370 Jan 25 01:17 HITS.pool.root.1
[2026-01-25 01:18:52] -rw------- 1 ek ek    849920 Jan 25 01:18 result.tar.gz
01:18:54 (2010239): run_atlas exited; CPU time 14254.081206
01:18:54 (2010239): called boinc_finish(0)

</stderr_txt>
]]>

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