Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:51:58 (85144): wrapper (7.7.26015): starting
16:51:58 (85144): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 16:51:58] Arguments: --nthreads 4
[2026-01-28 16:51:58] Threads: 4
[2026-01-28 16:51:58] Checking for CVMFS
[2026-01-28 16:51:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 16:51:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 16:51:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 16:51:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 16:51:59] 2.9.2.0 3129 407 69420 155622 0 188 30654562 36864000 0 130560 0 232954 99.991 7015 2945 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 16:51:59] CVMFS is ok
[2026-01-28 16:51:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 16:51:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 16:51:59] Further information can be found at the LHC@home message board.
[2026-01-28 16:51:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 16:51:59] Checking for apptainer binary...
[2026-01-28 16:51:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 16:51:59] Running /usr/bin/apptainer --version
[2026-01-28 16:51:59] apptainer version 1.4.1-1.1
[2026-01-28 16:51:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 16:51:59] thA373a
[2026-01-28 16:51:59] apptainer works
[2026-01-28 16:51:59] Set ATHENA_PROC_NUMBER=4
[2026-01-28 16:51:59] Set ATHENA_CORE_NUMBER=4
[2026-01-28 16:51:59] Starting ATLAS job with PandaID=6979617812
[2026-01-28 16:51:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 18:12:23]  *** The last 200 lines of the pilot log: ***
[2026-01-28 18:12:23] 2026-01-28 17:11:17,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-28 18:12:23] 2026-01-28 17:11:17,390 | INFO     | collected zombie processes
[2026-01-28 18:12:23] 2026-01-28 17:11:17,390 | INFO     | will attempt to kill all subprocesses of pid=93790
[2026-01-28 18:12:23] 2026-01-28 17:11:17,431 | INFO     | process IDs to be killed: [93790] (in reverse order)
[2026-01-28 18:12:23] 2026-01-28 17:11:17,464 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 18:12:23] 2026-01-28 17:11:17,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 18:12:23] 2026-01-28 17:11:17,466 | INFO     | did not find any defunct processes belonging to 93790
[2026-01-28 18:12:23] 2026-01-28 17:11:17,467 | INFO     | did not find any defunct processes belonging to 93790
[2026-01-28 18:12:23] 2026-01-28 17:11:17,467 | INFO     | ready for new job
[2026-01-28 18:12:23] 2026-01-28 17:11:17,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 18:12:23] 2026-01-28 17:11:17,468 | INFO     | **************************************
[2026-01-28 18:12:23] 2026-01-28 17:11:17,468 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 18:12:23] 2026-01-28 17:11:17,468 | INFO     | **************************************
[2026-01-28 18:12:23] 2026-01-28 17:11:17,468 | INFO     | 
[2026-01-28 18:12:23] 2026-01-28 17:11:17,469 | INFO     | architecture information:
[2026-01-28 18:12:23] 2026-01-28 17:11:17,469 | INFO     | executing command: cat /etc/os-release
[2026-01-28 18:12:23] 2026-01-28 17:11:17,483 | INFO     | cat /etc/os-release:
[2026-01-28 18:12:23] NAME="CentOS Linux"
[2026-01-28 18:12:23] VERSION="7 (Core)"
[2026-01-28 18:12:23] ID="centos"
[2026-01-28 18:12:23] ID_LIKE="rhel fedora"
[2026-01-28 18:12:23] VERSION_ID="7"
[2026-01-28 18:12:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 18:12:23] ANSI_COLOR="0;31"
[2026-01-28 18:12:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 18:12:23] HOME_URL="https://www.centos.org/"
[2026-01-28 18:12:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 18:12:23] 
[2026-01-28 18:12:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 18:12:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 18:12:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 18:12:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 18:12:23] 
[2026-01-28 18:12:23] 2026-01-28 17:11:17,483 | INFO     | **************************************
[2026-01-28 18:12:23] 2026-01-28 17:11:17,986 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 18:12:23] 2026-01-28 17:11:18,004 | INFO     | sufficient remaining disk space (327051902976 B)
[2026-01-28 18:12:23] 2026-01-28 17:11:18,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 18:12:23] 2026-01-28 17:11:18,004 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 18:12:23] 2026-01-28 17:11:18,004 | INFO     | update_server=False
[2026-01-28 18:12:23] 2026-01-28 17:11:18,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 18:12:23] 2026-01-28 17:11:18,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:12:23] 2026-01-28 17:11:18,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 18:12:23] 2026-01-28 17:11:18,269 | INFO     | all data control threads have been joined
[2026-01-28 18:12:23] 2026-01-28 17:11:18,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 18:12:23] 2026-01-28 17:11:18,829 | INFO     | aborting loop
[2026-01-28 18:12:23] 2026-01-28 17:11:18,830 | INFO     | all payload control threads have been joined
[2026-01-28 18:12:23] 2026-01-28 17:11:19,010 | INFO     | [job] retrieve thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,010 | INFO     | [job] queue monitor thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 18:12:23] 2026-01-28 17:11:19,275 | INFO     | [data] control thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,424 | INFO     | [payload] failed_post thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,488 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,711 | INFO     | all job control threads have been joined
[2026-01-28 18:12:23] 2026-01-28 17:11:19,835 | INFO     | [job] job monitor thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,836 | INFO     | [payload] control thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,965 | INFO     | [job] validate thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:19,966 | INFO     | [payload] validate_post thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:20,060 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:20,133 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:20,256 | INFO     | [data] copytool_in thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:20,717 | INFO     | [job] control thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:21,146 | INFO     | [data] copytool_out thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:22,012 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:28,208 | INFO     | job.realtimelogging is not enabled
[2026-01-28 18:12:23] 2026-01-28 17:11:29,214 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 18:12:23] 2026-01-28 17:11:48,225 | INFO     | PID=89272 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-28 18:12:23] 2026-01-28 17:11:48,225 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 18:12:23] 2026-01-28 17:11:48,225 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 18:12:23] 2026-01-28 17:11:48,225 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 18:12:23] 2026-01-28 17:12:17,422 | INFO     | [monitor] cgroup control has ended
[2026-01-28 18:12:23] 2026-01-28 17:12:18,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140128228435776)>', '<ExcThread(monitor, started 140127561033472)>']
[2026-01-28 18:12:23] 2026-01-28 17:12:18,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 18:12:23] 2026-01-28 17:12:18,385 | INFO     | [monitor] control thread has ended
[2026-01-28 18:12:23] 2026-01-28 17:12:23,197 | INFO     | all workflow threads have been joined
[2026-01-28 18:12:23] 2026-01-28 17:12:23,197 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 18:12:23] 2026-01-28 17:12:23,197 | INFO     | traces error code: 0
[2026-01-28 18:12:23] 2026-01-28 17:12:23,197 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 18:12:23] 2026-01-28 17:12:23,275 [wrapper] ==== pilot stdout END ====
[2026-01-28 18:12:23] 2026-01-28 17:12:23,279 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 18:12:23] 2026-01-28 17:12:23,283 [wrapper] pilotpid: 89272
[2026-01-28 18:12:23] 2026-01-28 17:12:23,287 [wrapper] Pilot exit status: 0
[2026-01-28 18:12:23] 2026-01-28 17:12:23,299 [wrapper] pandaids: 6979617812
[2026-01-28 18:12:23] 2026-01-28 17:12:23,323 [wrapper] cleanup supervisor_pilot   99214 89273
[2026-01-28 18:12:23] 2026-01-28 17:12:23,326 [wrapper] Test setup, not cleaning
[2026-01-28 18:12:23] 2026-01-28 17:12:23,330 [wrapper] apfmon messages muted
[2026-01-28 18:12:23] 2026-01-28 17:12:23,334 [wrapper] ==== wrapper stdout END ====
[2026-01-28 18:12:23] 2026-01-28 17:12:23,338 [wrapper] ==== wrapper stderr END ====
[2026-01-28 18:12:23]  *** Error codes and diagnostics ***
[2026-01-28 18:12:23]     "exeErrorCode": 0,
[2026-01-28 18:12:23]     "exeErrorDiag": "",
[2026-01-28 18:12:23]     "pilotErrorCode": 0,
[2026-01-28 18:12:23]     "pilotErrorDiag": "",
[2026-01-28 18:12:23]  *** Listing of results directory ***
[2026-01-28 18:12:23] total 413868
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc    584422 Jan 23 18:42 pilot3.tar.gz
[2026-01-28 18:12:23] -rwx------ 1 boinc boinc     36322 Jan 23 18:43 runpilot2-wrapper.sh
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc      5111 Jan 23 18:43 queuedata.json
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc       100 Jan 28 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 18:12:23] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 16:51 run_atlas
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc       105 Jan 28 16:51 job.xml
[2026-01-28 18:12:23] -rw-r--r-- 2 boinc boinc 250636386 Jan 28 16:51 EVNT.48298510._000012.pool.root.1
[2026-01-28 18:12:23] -rw-r--r-- 2 boinc boinc    597779 Jan 28 16:51 input.tar.gz
[2026-01-28 18:12:23] -rw-r--r-- 2 boinc boinc     15845 Jan 28 16:51 start_atlas.sh
[2026-01-28 18:12:23] drwxrwx--x 2 boinc boinc      4096 Jan 28 16:51 shared
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc         0 Jan 28 16:51 boinc_setup_complete
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc      6377 Jan 28 16:51 init_data.xml
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc         0 Jan 28 16:51 boinc_lockfile
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc      2615 Jan 28 16:51 pandaJob.out
[2026-01-28 18:12:23] -rw------- 1 boinc boinc   1005192 Jan 28 16:52 agis_schedconf.cvmfs.json
[2026-01-28 18:12:23] -rw------- 1 boinc boinc   1516246 Jan 28 16:52 agis_ddmendpoints.agis.ALL.json
[2026-01-28 18:12:23] -rw------- 1 boinc boinc       428 Jan 28 16:52 workernode_map.json
[2026-01-28 18:12:23] drwx------ 5 boinc boinc      4096 Jan 28 16:52 pilot3
[2026-01-28 18:12:23] -rw------- 1 boinc boinc 167279593 Jan 28 18:10 HITS.48298515._000913.pool.root.1
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc       529 Jan 28 18:11 boinc_task_state.xml
[2026-01-28 18:12:23] -rw------- 1 boinc boinc      1020 Jan 28 18:11 memory_monitor_summary.json
[2026-01-28 18:12:23] -rw------- 1 boinc boinc    278865 Jan 28 18:11 log.48298515._000913.job.log.tgz.1
[2026-01-28 18:12:23] -rw------- 1 boinc boinc      6305 Jan 28 18:11 heartbeat.json
[2026-01-28 18:12:23] -rw------- 1 boinc boinc        95 Jan 28 18:11 pilot_heartbeat.json
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc      8192 Jan 28 18:12 boinc_mmap_file
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc        27 Jan 28 18:12 wrapper_checkpoint.txt
[2026-01-28 18:12:23] -rw------- 1 boinc boinc      4818 Jan 28 18:12 pilotlog.txt
[2026-01-28 18:12:23] -rw------- 1 boinc boinc    696357 Jan 28 18:12 log.48298515._000913.job.log.1
[2026-01-28 18:12:23] -rw------- 1 boinc boinc       357 Jan 28 18:12 output.list
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc       620 Jan 28 18:12 runtime_log
[2026-01-28 18:12:23] -rw------- 1 boinc boinc    993280 Jan 28 18:12 result.tar.gz
[2026-01-28 18:12:23] -rw------- 1 boinc boinc       658 Jan 28 18:12 B3rMDmrMa38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBB3KDmkOwQVn.diag
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc      8901 Jan 28 18:12 runtime_log.err
[2026-01-28 18:12:23] -rw-r--r-- 1 boinc boinc     10484 Jan 28 18:12 stderr.txt
[2026-01-28 18:12:23] HITS file was successfully produced:
[2026-01-28 18:12:23] -rw------- 1 boinc boinc 167279593 Jan 28 18:10 shared/HITS.pool.root.1
[2026-01-28 18:12:23]  *** Contents of shared directory: ***
[2026-01-28 18:12:23] total 409704
[2026-01-28 18:12:23] -rw-r--r-- 2 boinc boinc 250636386 Jan 28 16:51 ATLAS.root_0
[2026-01-28 18:12:23] -rw-r--r-- 2 boinc boinc    597779 Jan 28 16:51 input.tar.gz
[2026-01-28 18:12:23] -rw-r--r-- 2 boinc boinc     15845 Jan 28 16:51 start_atlas.sh
[2026-01-28 18:12:23] -rw------- 1 boinc boinc 167279593 Jan 28 18:10 HITS.pool.root.1
[2026-01-28 18:12:23] -rw------- 1 boinc boinc    993280 Jan 28 18:12 result.tar.gz
18:12:24 (85144): run_atlas exited; CPU time 17832.903830
18:12:24 (85144): called boinc_finish(0)

</stderr_txt>
]]>

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