Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:40:51 (456771): wrapper (7.7.26015): starting
07:40:51 (456771): wrapper: running run_atlas (--nthreads 4)
[2026-01-24 07:40:51] Arguments: --nthreads 4
[2026-01-24 07:40:51] Threads: 4
[2026-01-24 07:40:51] Checking for CVMFS
[2026-01-24 07:40:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 07:40:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 07:40:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 07:40:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 07:40:52] 2.9.2.0 3774380 4854 97852 155463 2 49 22483506 36864001 0 130560 0 2277170 99.988 132423 12735 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-24 07:40:52] CVMFS is ok
[2026-01-24 07:40:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-24 07:40:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-24 07:40:52] Further information can be found at the LHC@home message board.
[2026-01-24 07:40:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 07:40:52] Checking for apptainer binary...
[2026-01-24 07:40:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 07:40:52] Running /usr/bin/apptainer --version
[2026-01-24 07:40:52] apptainer version 1.4.1-1.1
[2026-01-24 07:40:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 07:40:52] thA309
[2026-01-24 07:40:52] apptainer works
[2026-01-24 07:40:52] Set ATHENA_PROC_NUMBER=4
[2026-01-24 07:40:52] Set ATHENA_CORE_NUMBER=4
[2026-01-24 07:40:52] Starting ATLAS job with PandaID=6978751407
[2026-01-24 07:40:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 08:47:29]  *** The last 200 lines of the pilot log: ***
[2026-01-24 08:47:29] 2026-01-24 07:46:57,961 | INFO     | process IDs to be killed: [465401] (in reverse order)
[2026-01-24 08:47:29] 2026-01-24 07:46:57,996 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 08:47:29] 2026-01-24 07:46:57,997 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 08:47:29] 2026-01-24 07:46:57,999 | INFO     | did not find any defunct processes belonging to 465401
[2026-01-24 08:47:29] 2026-01-24 07:46:58,000 | INFO     | did not find any defunct processes belonging to 465401
[2026-01-24 08:47:29] 2026-01-24 07:46:58,000 | INFO     | ready for new job
[2026-01-24 08:47:29] 2026-01-24 07:46:58,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 08:47:29] 2026-01-24 07:46:58,001 | INFO     | **************************************
[2026-01-24 08:47:29] 2026-01-24 07:46:58,001 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 08:47:29] 2026-01-24 07:46:58,001 | INFO     | **************************************
[2026-01-24 08:47:29] 2026-01-24 07:46:58,001 | INFO     | 
[2026-01-24 08:47:29] 2026-01-24 07:46:58,001 | INFO     | architecture information:
[2026-01-24 08:47:29] 2026-01-24 07:46:58,002 | INFO     | executing command: cat /etc/os-release
[2026-01-24 08:47:29] 2026-01-24 07:46:58,016 | INFO     | cat /etc/os-release:
[2026-01-24 08:47:29] NAME="CentOS Linux"
[2026-01-24 08:47:29] VERSION="7 (Core)"
[2026-01-24 08:47:29] ID="centos"
[2026-01-24 08:47:29] ID_LIKE="rhel fedora"
[2026-01-24 08:47:29] VERSION_ID="7"
[2026-01-24 08:47:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 08:47:29] ANSI_COLOR="0;31"
[2026-01-24 08:47:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 08:47:29] HOME_URL="https://www.centos.org/"
[2026-01-24 08:47:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 08:47:29] 
[2026-01-24 08:47:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 08:47:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 08:47:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 08:47:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 08:47:29] 
[2026-01-24 08:47:29] 2026-01-24 07:46:58,016 | INFO     | **************************************
[2026-01-24 08:47:29] 2026-01-24 07:46:58,519 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-24 08:47:29] 2026-01-24 07:46:58,535 | INFO     | sufficient remaining disk space (234302210048 B)
[2026-01-24 08:47:29] 2026-01-24 07:46:58,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 08:47:29] 2026-01-24 07:46:58,535 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 08:47:29] 2026-01-24 07:46:58,535 | INFO     | update_server=False
[2026-01-24 08:47:29] 2026-01-24 07:46:58,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 08:47:29] 2026-01-24 07:46:58,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 08:47:29] 2026-01-24 07:46:58,587 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 08:47:29] 2026-01-24 07:46:58,769 | INFO     | all job control threads have been joined
[2026-01-24 08:47:29] 2026-01-24 07:46:58,904 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-24 08:47:29] 2026-01-24 07:46:58,905 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-24 08:47:29] 2026-01-24 07:46:58,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 08:47:29] 2026-01-24 07:46:58,905 | INFO     | will abort loop
[2026-01-24 08:47:29] 2026-01-24 07:46:59,021 | INFO     | all data control threads have been joined
[2026-01-24 08:47:29] 2026-01-24 07:46:59,541 | INFO     | [job] retrieve thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:46:59,594 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:46:59,614 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:46:59,632 | INFO     | all payload control threads have been joined
[2026-01-24 08:47:29] 2026-01-24 07:46:59,753 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:46:59,775 | INFO     | [job] control thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:46:59,875 | INFO     | [data] copytool_in thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:46:59,910 | INFO     | [job] job monitor thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:00,026 | INFO     | [data] control thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:00,294 | INFO     | [payload] validate_post thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:00,385 | INFO     | [payload] failed_post thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:00,591 | INFO     | [data] copytool_out thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:00,637 | INFO     | [payload] control thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:01,008 | INFO     | [job] validate thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:01,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 08:47:29] 2026-01-24 07:47:02,488 | INFO     | [job] queue monitor thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:02,542 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:08,660 | INFO     | job.realtimelogging is not enabled
[2026-01-24 08:47:29] 2026-01-24 07:47:09,407 | INFO     | [monitor] cgroup control has ended
[2026-01-24 08:47:29] 2026-01-24 07:47:09,665 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 08:47:29] 2026-01-24 07:47:11,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757283231552)>', '<ExcThread(monitor, started 139756314797824)>']
[2026-01-24 08:47:29] 2026-01-24 07:47:16,301 | INFO     | all workflow threads have been joined
[2026-01-24 08:47:29] 2026-01-24 07:47:16,302 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 08:47:29] 2026-01-24 07:47:16,302 | INFO     | traces error code: 0
[2026-01-24 08:47:29] 2026-01-24 07:47:16,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 08:47:29] 2026-01-24 07:47:29,372 | INFO     | PID=460883 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-24 08:47:29] 2026-01-24 07:47:29,372 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 08:47:29] 2026-01-24 07:47:29,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 08:47:29] 2026-01-24 07:47:29,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 08:47:29] 2026-01-24 07:47:29,372 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 08:47:29] 2026-01-24 07:47:29,372 | INFO     | [monitor] control thread has ended
[2026-01-24 08:47:29] 2026-01-24 07:47:29,449 [wrapper] ==== pilot stdout END ====
[2026-01-24 08:47:29] 2026-01-24 07:47:29,453 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 08:47:29] 2026-01-24 07:47:29,457 [wrapper] pilotpid: 460883
[2026-01-24 08:47:29] 2026-01-24 07:47:29,462 [wrapper] Pilot exit status: 0
[2026-01-24 08:47:29] 2026-01-24 07:47:29,473 [wrapper] pandaids: 6978751407
[2026-01-24 08:47:29] 2026-01-24 07:47:29,497 [wrapper] cleanup supervisor_pilot  471911 460884
[2026-01-24 08:47:29] 2026-01-24 07:47:29,501 [wrapper] Test setup, not cleaning
[2026-01-24 08:47:29] 2026-01-24 07:47:29,505 [wrapper] apfmon messages muted
[2026-01-24 08:47:29] 2026-01-24 07:47:29,509 [wrapper] ==== wrapper stdout END ====
[2026-01-24 08:47:29] 2026-01-24 07:47:29,513 [wrapper] ==== wrapper stderr END ====
[2026-01-24 08:47:29]  *** Error codes and diagnostics ***
[2026-01-24 08:47:29]     "exeErrorCode": 0,
[2026-01-24 08:47:29]     "exeErrorDiag": "",
[2026-01-24 08:47:29]     "pilotErrorCode": 0,
[2026-01-24 08:47:29]     "pilotErrorDiag": "",
[2026-01-24 08:47:29]  *** Listing of results directory ***
[2026-01-24 08:47:29] total 666464
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc      5111 Jan 23 14:39 queuedata.json
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc    584422 Jan 23 14:39 pilot3.tar.gz
[2026-01-24 08:47:29] -rwx------ 1 boinc boinc     36322 Jan 23 14:40 runpilot2-wrapper.sh
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc       100 Jan 24 07:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 08:47:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 24 07:40 run_atlas
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc       105 Jan 24 07:40 job.xml
[2026-01-24 08:47:29] -rw-r--r-- 2 boinc boinc 497818777 Jan 24 07:40 EVNT.48310824._000150.pool.root.1
[2026-01-24 08:47:29] -rw-r--r-- 2 boinc boinc    597751 Jan 24 07:40 input.tar.gz
[2026-01-24 08:47:29] -rw-r--r-- 2 boinc boinc     15845 Jan 24 07:40 start_atlas.sh
[2026-01-24 08:47:29] drwxrwx--x 2 boinc boinc      4096 Jan 24 07:40 shared
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc         0 Jan 24 07:40 boinc_setup_complete
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc      6377 Jan 24 07:40 init_data.xml
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc         0 Jan 24 07:40 boinc_lockfile
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc      2525 Jan 24 07:40 pandaJob.out
[2026-01-24 08:47:29] -rw------- 1 boinc boinc   1004222 Jan 24 07:41 agis_schedconf.cvmfs.json
[2026-01-24 08:47:29] -rw------- 1 boinc boinc   1516246 Jan 24 07:41 agis_ddmendpoints.agis.ALL.json
[2026-01-24 08:47:29] -rw------- 1 boinc boinc       427 Jan 24 07:41 workernode_map.json
[2026-01-24 08:47:29] drwx------ 5 boinc boinc      4096 Jan 24 07:41 pilot3
[2026-01-24 08:47:29] -rw------- 1 boinc boinc 178951616 Jan 24 08:46 HITS.48310826._002643.pool.root.1
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc       530 Jan 24 08:46 boinc_task_state.xml
[2026-01-24 08:47:29] -rw------- 1 boinc boinc      1026 Jan 24 08:46 memory_monitor_summary.json
[2026-01-24 08:47:29] -rw------- 1 boinc boinc    290527 Jan 24 08:46 log.48310826._002643.job.log.tgz.1
[2026-01-24 08:47:29] -rw------- 1 boinc boinc      6335 Jan 24 08:46 heartbeat.json
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc        27 Jan 24 08:47 wrapper_checkpoint.txt
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc      8192 Jan 24 08:47 boinc_mmap_file
[2026-01-24 08:47:29] -rw------- 1 boinc boinc       746 Jan 24 08:47 pilotlog.txt
[2026-01-24 08:47:29] -rw------- 1 boinc boinc        95 Jan 24 08:47 pilot_heartbeat.json
[2026-01-24 08:47:29] -rw------- 1 boinc boinc    590004 Jan 24 08:47 log.48310826._002643.job.log.1
[2026-01-24 08:47:29] -rw------- 1 boinc boinc       357 Jan 24 08:47 output.list
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc       620 Jan 24 08:47 runtime_log
[2026-01-24 08:47:29] -rw------- 1 boinc boinc    901120 Jan 24 08:47 result.tar.gz
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc      8896 Jan 24 08:47 runtime_log.err
[2026-01-24 08:47:29] -rw------- 1 boinc boinc       657 Jan 24 08:47 1ANKDmeZW38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4j2KDmIexhDn.diag
[2026-01-24 08:47:29] -rw-r--r-- 1 boinc boinc     10398 Jan 24 08:47 stderr.txt
[2026-01-24 08:47:29] HITS file was successfully produced:
[2026-01-24 08:47:29] -rw------- 1 boinc boinc 178951616 Jan 24 08:46 shared/HITS.pool.root.1
[2026-01-24 08:47:29]  *** Contents of shared directory: ***
[2026-01-24 08:47:29] total 662400
[2026-01-24 08:47:29] -rw-r--r-- 2 boinc boinc 497818777 Jan 24 07:40 ATLAS.root_0
[2026-01-24 08:47:29] -rw-r--r-- 2 boinc boinc    597751 Jan 24 07:40 input.tar.gz
[2026-01-24 08:47:29] -rw-r--r-- 2 boinc boinc     15845 Jan 24 07:40 start_atlas.sh
[2026-01-24 08:47:29] -rw------- 1 boinc boinc 178951616 Jan 24 08:46 HITS.pool.root.1
[2026-01-24 08:47:29] -rw------- 1 boinc boinc    901120 Jan 24 08:47 result.tar.gz
08:47:30 (456771): run_atlas exited; CPU time 14851.956216
08:47:30 (456771): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN