Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:55:45 (1845326): wrapper (7.7.26015): starting
07:55:45 (1845326): wrapper: running run_atlas (--nthreads 6)
[2026-01-24 07:55:45] Arguments: --nthreads 6
[2026-01-24 07:55:45] Threads: 6
[2026-01-24 07:55:45] Checking for CVMFS
[2026-01-24 07:55:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 07:56:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 07:56:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 07:56:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 07:56:05] 2.13.3.0 1625780 959 62280 155451 2 50 13418531 20971520 929 130560 0 726825 99.994 31235 13 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2026-01-24 07:56:05] CVMFS is ok
[2026-01-24 07:56:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 07:56:05] Checking for apptainer binary...
[2026-01-24 07:56:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 07:56:05] Running /usr/bin/apptainer --version
[2026-01-24 07:56:05] apptainer version 1.4.5-2.el9
[2026-01-24 07:56:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 07:56:05] testio005
[2026-01-24 07:56:05] apptainer works
[2026-01-24 07:56:05] Set ATHENA_PROC_NUMBER=6
[2026-01-24 07:56:05] Set ATHENA_CORE_NUMBER=6
[2026-01-24 07:56:05] Starting ATLAS job with PandaID=6978423702
[2026-01-24 07:56:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 09:36:41]  *** The last 200 lines of the pilot log: ***
[2026-01-24 09:36:41]  domain=
[2026-01-24 09:36:41]  filesize=314483
[2026-01-24 09:36:41]  filetype=log
[2026-01-24 09:36:41]  guid=c3922abb-1be4-4f3f-acc7-0df683b73442
[2026-01-24 09:36:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-24 09:36:41]  is_altstaged=None
[2026-01-24 09:36:41]  is_tar=False
[2026-01-24 09:36:41]  lfn=log.48310826._002065.job.log.tgz.1
[2026-01-24 09:36:41]  mtime=0
[2026-01-24 09:36:41]  protocol_id=None
[2026-01-24 09:36:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-24 09:36:41]  replicas=None
[2026-01-24 09:36:41]  scope=mc23_13p6TeV
[2026-01-24 09:36:41]  status=None
[2026-01-24 09:36:41]  status_code=0
[2026-01-24 09:36:41]  storage_token=
[2026-01-24 09:36:41]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6978423702/log.48310826._002065.job.log.tgz.1
[2026-01-24 09:36:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/c4/log.48310826._002065.job.log.tgz.1
[2026-01-24 09:36:41]  workdir=None
[2026-01-24 09:36:41] ]
[2026-01-24 09:36:41] 2026-01-24 00:35:44,319 | INFO     | transferring file log.48310826._002065.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6978423702/log.48310826._002065.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-24 09:36:41] 2026-01-24 00:35:44,319 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6978423702/log.48310826._002065.job.log.tgz.1 /var/lib/boinc/slots/1/log.48310826._002065.job
[2026-01-24 09:36:41] 2026-01-24 00:35:44,336 | INFO     | adding to output.list: log.48310826._002065.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/c4/log.48310826._002065.job.log.tg
[2026-01-24 09:36:41] 2026-01-24 00:35:44,337 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-24 09:36:41] 2026-01-24 00:35:44,337 | INFO     | summary of transferred files:
[2026-01-24 09:36:41] 2026-01-24 00:35:44,337 | INFO     |  -- lfn=log.48310826._002065.job.log.tgz.1, status_code=0, status=transferred
[2026-01-24 09:36:41] 2026-01-24 00:35:44,337 | INFO     | stage-out finished correctly
[2026-01-24 09:36:41] 2026-01-24 00:35:45,975 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-24 09:36:41] 2026-01-24 00:35:46,120 | INFO     | monitor loop #448: job 0:6978423702 is in state 'finished'
[2026-01-24 09:36:41] 2026-01-24 00:35:46,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-24 09:36:41] 2026-01-24 00:35:46,209 | INFO     | time since job start (5901s) is within the limit (349056.0s)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,253 | INFO     | job 6978423702 has state=finished
[2026-01-24 09:36:41] 2026-01-24 00:35:47,253 | INFO     | preparing for final server update for job 6978423702 in state='finished'
[2026-01-24 09:36:41] 2026-01-24 00:35:47,253 | INFO     | reading metadata from: /var/lib/boinc/slots/1/PanDA_Pilot-6978423702/jobReport.json
[2026-01-24 09:36:41] 2026-01-24 00:35:47,255 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/1/workernode_map.json
[2026-01-24 09:36:41] 2026-01-24 00:35:47,256 | INFO     | this job has now completed (state=finished)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,256 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,256 | INFO     | log transfer has been attempted: DONE
[2026-01-24 09:36:41] 2026-01-24 00:35:47,256 | INFO     | job 6978423702 has finished - writing final server update
[2026-01-24 09:36:41] 2026-01-24 00:35:47,256 | INFO     | total number of processed events: 400 (read)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,259 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6978423702/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,260 | INFO     | extracted standard info from prmon json
[2026-01-24 09:36:41] 2026-01-24 00:35:47,260 | INFO     | extracted standard memory fields from prmon json
[2026-01-24 09:36:41] 2026-01-24 00:35:47,260 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-24 09:36:41] 2026-01-24 00:35:47,260 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-24 09:36:41] 2026-01-24 00:35:47,260 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-24 09:36:41] 2026-01-24 00:35:47,262 | INFO     | fitting pss+swap vs Time
[2026-01-24 09:36:41] 2026-01-24 00:35:47,262 | INFO     | sum of square deviations: 226022842.5
[2026-01-24 09:36:41] 2026-01-24 00:35:47,262 | INFO     | sum of deviations: -503024025.49999964
[2026-01-24 09:36:41] 2026-01-24 00:35:47,262 | INFO     | mean x: 1769212088.5
[2026-01-24 09:36:41] 2026-01-24 00:35:47,263 | INFO     | mean y: 2451064.4777777777
[2026-01-24 09:36:41] 2026-01-24 00:35:47,263 | INFO     | intersect: 3939912326.697466
[2026-01-24 09:36:41] 2026-01-24 00:35:47,263 | INFO     | chi2: 0.015737258812471133
[2026-01-24 09:36:41] 2026-01-24 00:35:47,263 | INFO     | current memory leak: -2.23 B/s (using 90 data points, chi2=0.02)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,263 | INFO     | could have reported an average CPU frequency of 3306 MHz (7 samples)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,263 | INFO     | ..............................
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . Timing measurements:
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . get job = 0 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . initial setup = 11 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . payload setup = 6 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . stage-in = 0 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . payload execution = 5875 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . stage-out = 0 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | . log creation = 0 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,264 | INFO     | ..............................
[2026-01-24 09:36:41] 2026-01-24 00:35:47,341 | INFO     | 
[2026-01-24 09:36:41] 2026-01-24 00:35:47,341 | INFO     | job summary report
[2026-01-24 09:36:41] 2026-01-24 00:35:47,341 | INFO     | --------------------------------------------------
[2026-01-24 09:36:41] 2026-01-24 00:35:47,341 | INFO     | PanDA job id: 6978423702
[2026-01-24 09:36:41] 2026-01-24 00:35:47,341 | INFO     | task id: 48310826
[2026-01-24 09:36:41] 2026-01-24 00:35:47,341 | INFO     | errors: (none)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | pilot state: finished 
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | transexitcode: 0
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | exeerrorcode: 0
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | exeerrordiag: 
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | exitcode: 0
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | exitmsg: OK
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | cpuconsumptiontime: 32544 s
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | nevents: 400
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | neventsw: 0
[2026-01-24 09:36:41] 2026-01-24 00:35:47,342 | INFO     | pid: 1854055
[2026-01-24 09:36:41] 2026-01-24 00:35:47,343 | INFO     | pgrp: 1854055
[2026-01-24 09:36:41] 2026-01-24 00:35:47,343 | INFO     | corecount: 6
[2026-01-24 09:36:41] 2026-01-24 00:35:47,343 | INFO     | event service: False
[2026-01-24 09:36:41] 2026-01-24 00:35:47,343 | INFO     | sizes: {0: 2284240, 11: 2284240, 5885: 2311022, 5887: 2320020, 5889: 2320076, 5890: 2320270}
[2026-01-24 09:36:41] 2026-01-24 00:35:47,343 | INFO     | --------------------------------------------------
[2026-01-24 09:36:41] 2026-01-24 00:35:47,343 | INFO     | 
[2026-01-24 09:36:41] 2026-01-24 00:35:47,343 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-24 09:36:41] 2026-01-24 00:35:47,362 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,362 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,362 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,362 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,364 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,364 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-24 09:36:41] 2026-01-24 00:35:47,364 | INFO     | job 6978423702 has completed (purged errors)
[2026-01-24 09:36:41] 2026-01-24 00:35:47,364 | INFO     | overall cleanup function is called
[2026-01-24 09:36:41] 2026-01-24 00:35:48,371 | INFO     | --- collectZombieJob: --- 10, [1854055]
[2026-01-24 09:36:41] 2026-01-24 00:35:48,372 | INFO     | zombie collector waiting for pid 1854055
[2026-01-24 09:36:41] 2026-01-24 00:35:48,372 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-24 09:36:41] 2026-01-24 00:35:48,372 | INFO     | collected zombie processes
[2026-01-24 09:36:41] 2026-01-24 00:35:48,372 | INFO     | will attempt to kill all subprocesses of pid=1854055
[2026-01-24 09:36:41] 2026-01-24 00:35:48,470 | INFO     | process IDs to be killed: [1854055] (in reverse order)
[2026-01-24 09:36:41] 2026-01-24 00:35:48,514 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 09:36:41] 2026-01-24 00:35:48,515 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 09:36:41] 2026-01-24 00:35:48,518 | INFO     | did not find any defunct processes belonging to 1854055
[2026-01-24 09:36:41] 2026-01-24 00:35:48,521 | INFO     | did not find any defunct processes belonging to 1854055
[2026-01-24 09:36:41] 2026-01-24 00:35:48,522 | INFO     | ready for new job
[2026-01-24 09:36:41] 2026-01-24 00:35:48,522 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 09:36:41] 2026-01-24 00:35:48,523 | INFO     | **************************************
[2026-01-24 09:36:41] 2026-01-24 00:35:48,523 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 09:36:41] 2026-01-24 00:35:48,523 | INFO     | **************************************
[2026-01-24 09:36:41] 2026-01-24 00:35:48,523 | INFO     | 
[2026-01-24 09:36:41] 2026-01-24 00:35:48,525 | INFO     | architecture information:
[2026-01-24 09:36:41] 2026-01-24 00:35:48,525 | INFO     | executing command: cat /etc/os-release
[2026-01-24 09:36:41] 2026-01-24 00:35:48,539 | INFO     | cat /etc/os-release:
[2026-01-24 09:36:41] NAME="CentOS Linux"
[2026-01-24 09:36:41] VERSION="7 (Core)"
[2026-01-24 09:36:41] ID="centos"
[2026-01-24 09:36:41] ID_LIKE="rhel fedora"
[2026-01-24 09:36:41] VERSION_ID="7"
[2026-01-24 09:36:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 09:36:41] ANSI_COLOR="0;31"
[2026-01-24 09:36:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 09:36:41] HOME_URL="https://www.centos.org/"
[2026-01-24 09:36:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 09:36:41] 
[2026-01-24 09:36:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 09:36:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 09:36:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 09:36:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 09:36:41] 
[2026-01-24 09:36:41] 2026-01-24 00:35:48,540 | INFO     | **************************************
[2026-01-24 09:36:41] 2026-01-24 00:35:49,043 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-24 09:36:41] 2026-01-24 00:35:49,057 | INFO     | sufficient remaining disk space (95649005568 B)
[2026-01-24 09:36:41] 2026-01-24 00:35:49,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 09:36:41] 2026-01-24 00:35:49,057 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 09:36:41] 2026-01-24 00:35:49,057 | INFO     | update_server=False
[2026-01-24 09:36:41] 2026-01-24 00:35:49,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 09:36:41] 2026-01-24 00:35:49,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 09:36:41] 2026-01-24 00:35:49,126 | INFO     | all job control threads have been joined
[2026-01-24 09:36:41] 2026-01-24 00:35:49,422 | INFO     | all data control threads have been joined
[2026-01-24 09:36:41] 2026-01-24 00:35:49,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 09:36:41] 2026-01-24 00:35:49,628 | INFO     | aborting loop
[2026-01-24 09:36:41] 2026-01-24 00:35:49,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 09:36:41] 2026-01-24 00:35:50,063 | INFO     | [job] retrieve thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,063 | INFO     | [job] queue monitor thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,071 | INFO     | [payload] failed_post thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,132 | INFO     | [job] control thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,427 | INFO     | [data] control thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,500 | INFO     | all payload control threads have been joined
[2026-01-24 09:36:41] 2026-01-24 00:35:50,633 | INFO     | [job] job monitor thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,707 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,751 | INFO     | [job] validate thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:50,995 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:51,037 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:51,048 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:51,313 | INFO     | [data] copytool_in thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:51,505 | INFO     | [payload] control thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:51,574 | INFO     | [payload] validate_post thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:51,936 | INFO     | [data] copytool_out thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:35:52,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 09:36:41] 2026-01-24 00:35:56,066 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 09:36:41] 2026-01-24 00:36:19,395 | INFO     | PID=1849463 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-24 09:36:41] 2026-01-24 00:36:19,395 | INFO     | .. there are 2 such processes running
[2026-01-24 09:36:41] 2026-01-24 00:36:19,395 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 09:36:41] 2026-01-24 00:36:19,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 09:36:41] 2026-01-24 00:36:19,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 09:36:41] 2026-01-24 00:36:35,037 | INFO     | [monitor] cgroup control has ended
[2026-01-24 09:36:41] 2026-01-24 00:36:36,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140232308504384)>', '<ExcThread(monitor, started 140231747561216)>']
[2026-01-24 09:36:41] 2026-01-24 00:36:37,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 09:36:41] 2026-01-24 00:36:37,481 | INFO     | [monitor] control thread has ended
[2026-01-24 09:36:41] 2026-01-24 00:36:41,774 | INFO     | all workflow threads have been joined
[2026-01-24 09:36:41] 2026-01-24 00:36:41,774 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 09:36:41] 2026-01-24 00:36:41,775 | INFO     | traces error code: 0
[2026-01-24 09:36:41] 2026-01-24 00:36:41,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 09:36:41] 2026-01-24 00:36:41,873 [wrapper] ==== pilot stdout END ====
[2026-01-24 09:36:41] 2026-01-24 00:36:41,876 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 09:36:41] 2026-01-24 00:36:41,878 [wrapper] pilotpid: 1849463
[2026-01-24 09:36:41] 2026-01-24 00:36:41,881 [wrapper] Pilot exit status: 0
[2026-01-24 09:36:41] 2026-01-24 00:36:41,893 [wrapper] pandaids: 6978423702
[2026-01-24 09:36:41] 2026-01-24 00:36:41,922 [wrapper] cleanup supervisor_pilot 1872258 1849464
[2026-01-24 09:36:41] 2026-01-24 00:36:41,924 [wrapper] Test setup, not cleaning
[2026-01-24 09:36:41] 2026-01-24 00:36:41,927 [wrapper] apfmon messages muted
[2026-01-24 09:36:41] 2026-01-24 00:36:41,929 [wrapper] ==== wrapper stdout END ====
[2026-01-24 09:36:41] 2026-01-24 00:36:41,932 [wrapper] ==== wrapper stderr END ====
[2026-01-24 09:36:41]  *** Error codes and diagnostics ***
[2026-01-24 09:36:41]     "exeErrorCode": 0,
[2026-01-24 09:36:41]     "exeErrorDiag": "",
[2026-01-24 09:36:41]     "pilotErrorCode": 0,
[2026-01-24 09:36:41]     "pilotErrorDiag": "",
[2026-01-24 09:36:41]  *** Listing of results directory ***
[2026-01-24 09:36:41] total 663616
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc    584422 Jan 23 20:33 pilot3.tar.gz
[2026-01-24 09:36:41] -rwx------. 1 boinc boinc     36322 Jan 23 20:35 runpilot2-wrapper.sh
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc      5111 Jan 23 20:36 queuedata.json
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc       100 Jan 24 07:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 09:36:41] -rwxr-xr-x. 1 boinc boinc      7986 Jan 24 07:55 run_atlas
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc       105 Jan 24 07:55 job.xml
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc      9356 Jan 24 07:55 init_data.xml
[2026-01-24 09:36:41] -rw-r--r--. 2 boinc boinc 497433644 Jan 24 07:55 EVNT.48310824._000139.pool.root.1
[2026-01-24 09:36:41] -rw-r--r--. 2 boinc boinc     15845 Jan 24 07:55 start_atlas.sh
[2026-01-24 09:36:41] drwxrwx--x. 2 boinc boinc        68 Jan 24 07:55 shared
[2026-01-24 09:36:41] -rw-r--r--. 2 boinc boinc    597754 Jan 24 07:55 input.tar.gz
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc         0 Jan 24 07:55 boinc_lockfile
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc      2523 Jan 24 07:56 pandaJob.out
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc   1004238 Jan 24 07:57 agis_schedconf.cvmfs.json
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc   1516246 Jan 24 07:57 agis_ddmendpoints.agis.ALL.json
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc       424 Jan 24 07:57 workernode_map.json
[2026-01-24 09:36:41] drwx------. 5 boinc boinc      4096 Jan 24 07:57 pilot3
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc 175813456 Jan 24 09:34 HITS.48310826._002065.pool.root.1
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc       530 Jan 24 09:35 boinc_task_state.xml
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc        95 Jan 24 09:35 pilot_heartbeat.json
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc      1015 Jan 24 09:35 memory_monitor_summary.json
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc    314483 Jan 24 09:35 log.48310826._002065.job.log.tgz.1
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc      6289 Jan 24 09:35 heartbeat.json
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc        27 Jan 24 09:36 wrapper_checkpoint.txt
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc      8192 Jan 24 09:36 boinc_mmap_file
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc      4819 Jan 24 09:36 pilotlog.txt
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc    864780 Jan 24 09:36 log.48310826._002065.job.log.1
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc       357 Jan 24 09:36 output.list
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc       620 Jan 24 09:36 runtime_log
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc   1198080 Jan 24 09:36 result.tar.gz
[2026-01-24 09:36:41] -rw-------. 1 boinc boinc       644 Jan 24 09:36 SmKNDm4cU38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrwvKDmn9WUBo.diag
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc      8774 Jan 24 09:36 runtime_log.err
[2026-01-24 09:36:41] -rw-r--r--. 1 boinc boinc     20805 Jan 24 09:36 stderr.txt
[2026-01-24 09:36:42] HITS file was successfully produced:
[2026-01-24 09:36:42] -rw-------. 1 boinc boinc 175813456 Jan 24 09:34 shared/HITS.pool.root.1
[2026-01-24 09:36:42]  *** Contents of shared directory: ***
[2026-01-24 09:36:42] total 659244
[2026-01-24 09:36:42] -rw-r--r--. 2 boinc boinc 497433644 Jan 24 07:55 ATLAS.root_0
[2026-01-24 09:36:42] -rw-r--r--. 2 boinc boinc     15845 Jan 24 07:55 start_atlas.sh
[2026-01-24 09:36:42] -rw-r--r--. 2 boinc boinc    597754 Jan 24 07:55 input.tar.gz
[2026-01-24 09:36:42] -rw-------. 1 boinc boinc 175813456 Jan 24 09:34 HITS.pool.root.1
[2026-01-24 09:36:42] -rw-------. 1 boinc boinc   1198080 Jan 24 09:36 result.tar.gz
09:36:43 (1845326): run_atlas exited; CPU time 32603.815802
09:36:43 (1845326): called boinc_finish(0)

</stderr_txt>
]]>

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