Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:35:05 (3323): wrapper (7.7.26015): starting
01:35:05 (3323): wrapper: running run_atlas (--nthreads 8)
[2026-01-24 01:35:05] Arguments: --nthreads 8
[2026-01-24 01:35:05] Threads: 8
[2026-01-24 01:35:05] Checking for CVMFS
[2026-01-24 01:35:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 01:35:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 01:35:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 01:35:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 01:35:13] 2.11.2.0 23802 56303 131468 155454 2 93 17254642 25165825 941 130560 0 19635606 99.807 11982348 3138 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-24 01:35:13] CVMFS is ok
[2026-01-24 01:35:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 01:35:13] Checking for apptainer binary...
[2026-01-24 01:35:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 01:35:13] Running /usr/bin/apptainer --version
[2026-01-24 01:35:13] apptainer version 1.3.2-1.el7
[2026-01-24 01:35:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 01:35:26] cg-vwn426.simple-grid.lan
[2026-01-24 01:35:26] apptainer works
[2026-01-24 01:35:26] Set ATHENA_PROC_NUMBER=8
[2026-01-24 01:35:26] Set ATHENA_CORE_NUMBER=8
[2026-01-24 01:35:26] Starting ATLAS job with PandaID=6978755155
[2026-01-24 01:35:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 05:39:15]  *** The last 200 lines of the pilot log: ***
[2026-01-24 05:39:15] 2026-01-24 04:38:27,680 | INFO     | total number of processed events: 400 (read)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,683 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6978755155/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,683 | INFO     | extracted standard info from prmon json
[2026-01-24 05:39:15] 2026-01-24 04:38:27,683 | INFO     | extracted standard memory fields from prmon json
[2026-01-24 05:39:15] 2026-01-24 04:38:27,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-24 05:39:15] 2026-01-24 04:38:27,684 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-24 05:39:15] 2026-01-24 04:38:27,684 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-24 05:39:15] 2026-01-24 04:38:27,692 | INFO     | fitting pss+swap vs Time
[2026-01-24 05:39:15] 2026-01-24 04:38:27,693 | INFO     | sum of square deviations: 3675146117.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,698 | INFO     | sum of deviations: 76922337852.00002
[2026-01-24 05:39:15] 2026-01-24 04:38:27,700 | INFO     | mean x: 1769222525.5
[2026-01-24 05:39:15] 2026-01-24 04:38:27,700 | INFO     | mean y: 2427776.4385964912
[2026-01-24 05:39:15] 2026-01-24 04:38:27,700 | INFO     | intersect: -37028136045.87043
[2026-01-24 05:39:15] 2026-01-24 04:38:27,700 | INFO     | chi2: 6.684301511976638
[2026-01-24 05:39:15] 2026-01-24 04:38:27,701 | INFO     | sum of square deviations: 3438620752.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,703 | INFO     | sum of deviations: 90098493768.00002
[2026-01-24 05:39:15] 2026-01-24 04:38:27,703 | INFO     | mean x: 1769222373.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,703 | INFO     | mean y: 2436098.524663677
[2026-01-24 05:39:15] 2026-01-24 04:38:27,703 | INFO     | intersect: -46354601343.08114
[2026-01-24 05:39:15] 2026-01-24 04:38:27,704 | INFO     | chi2: 5.967501340863034
[2026-01-24 05:39:15] 2026-01-24 04:38:27,704 | INFO     | current chi2=5.967501340863034 (change=10.723636117091253 %)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,704 | INFO     | right removable region: 222
[2026-01-24 05:39:15] 2026-01-24 04:38:27,705 | INFO     | sum of square deviations: 3438620752.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,706 | INFO     | sum of deviations: 817924233.9999981
[2026-01-24 05:39:15] 2026-01-24 04:38:27,707 | INFO     | mean x: 1769222678.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,707 | INFO     | mean y: 2476796.394618834
[2026-01-24 05:39:15] 2026-01-24 04:38:27,707 | INFO     | intersect: -418357662.5485218
[2026-01-24 05:39:15] 2026-01-24 04:38:27,707 | INFO     | chi2: 2.145632484042414
[2026-01-24 05:39:15] 2026-01-24 04:38:27,707 | INFO     | current chi2=2.145632484042414 (change=67.90042339954347 %)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,708 | INFO     | sum of square deviations: 3212467674.5
[2026-01-24 05:39:15] 2026-01-24 04:38:27,710 | INFO     | sum of deviations: -34895681624.5
[2026-01-24 05:39:15] 2026-01-24 04:38:27,710 | INFO     | mean x: 1769222830.5
[2026-01-24 05:39:15] 2026-01-24 04:38:27,710 | INFO     | mean y: 2500716.9403669727
[2026-01-24 05:39:15] 2026-01-24 04:38:27,710 | INFO     | intersect: 19220822229.08878
[2026-01-24 05:39:15] 2026-01-24 04:38:27,710 | INFO     | chi2: 0.927685980560425
[2026-01-24 05:39:15] 2026-01-24 04:38:27,711 | INFO     | current chi2=0.927685980560425 (change=56.76398509717535 %)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,711 | INFO     | sum of square deviations: 2996454322.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,720 | INFO     | sum of deviations: -30056092020.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,720 | INFO     | mean x: 1769222983.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,721 | INFO     | mean y: 2497271.0516431923
[2026-01-24 05:39:15] 2026-01-24 04:38:27,721 | INFO     | intersect: 17748781067.380074
[2026-01-24 05:39:15] 2026-01-24 04:38:27,721 | INFO     | chi2: 0.9099598368109129
[2026-01-24 05:39:15] 2026-01-24 04:38:27,721 | INFO     | current chi2=0.9099598368109129 (change=1.9107913799455651 %)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,721 | INFO     | left removable region: 30
[2026-01-24 05:39:15] 2026-01-24 04:38:27,722 | INFO     | sum of square deviations: 2194675568.0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,723 | INFO     | sum of deviations: 3175653991.5
[2026-01-24 05:39:15] 2026-01-24 04:38:27,724 | INFO     | mean x: 1769223257.5
[2026-01-24 05:39:15] 2026-01-24 04:38:27,724 | INFO     | mean y: 2492795.359375
[2026-01-24 05:39:15] 2026-01-24 04:38:27,724 | INFO     | intersect: -2557539758.6342764
[2026-01-24 05:39:15] 2026-01-24 04:38:27,724 | INFO     | chi2: 8.334012760480189e-05
[2026-01-24 05:39:15] 2026-01-24 04:38:27,725 | INFO     | current memory leak: 1.45 B/s (using 192 data points, chi2=0.00)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,725 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,725 | INFO     | ..............................
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . Timing measurements:
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . get job = 0 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . initial setup = 127 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . payload setup = 147 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . stage-in = 0 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . payload execution = 14036 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . stage-out = 2 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | . log creation = 1 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,726 | INFO     | ..............................
[2026-01-24 05:39:15] 2026-01-24 04:38:27,872 | INFO     | 
[2026-01-24 05:39:15] 2026-01-24 04:38:27,873 | INFO     | job summary report
[2026-01-24 05:39:15] 2026-01-24 04:38:27,873 | INFO     | --------------------------------------------------
[2026-01-24 05:39:15] 2026-01-24 04:38:27,873 | INFO     | PanDA job id: 6978755155
[2026-01-24 05:39:15] 2026-01-24 04:38:27,873 | INFO     | task id: 48310826
[2026-01-24 05:39:15] 2026-01-24 04:38:27,873 | INFO     | errors: (none)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,873 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-24 05:39:15] 2026-01-24 04:38:27,873 | INFO     | pilot state: finished 
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | transexitcode: 0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | exeerrorcode: 0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | exeerrordiag: 
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | exitcode: 0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | exitmsg: OK
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | cpuconsumptiontime: 51291 s
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | nevents: 400
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | neventsw: 0
[2026-01-24 05:39:15] 2026-01-24 04:38:27,874 | INFO     | pid: 11844
[2026-01-24 05:39:15] 2026-01-24 04:38:27,875 | INFO     | pgrp: 11844
[2026-01-24 05:39:15] 2026-01-24 04:38:27,875 | INFO     | corecount: 8
[2026-01-24 05:39:15] 2026-01-24 04:38:27,875 | INFO     | event service: False
[2026-01-24 05:39:15] 2026-01-24 04:38:27,875 | INFO     | sizes: {0: 2283152, 1: 2283753, 2: 2284238, 3: 2284298, 13: 2284326, 14187: 2314930, 14191: 2323928, 14194: 2324178}
[2026-01-24 05:39:15] 2026-01-24 04:38:27,875 | INFO     | --------------------------------------------------
[2026-01-24 05:39:15] 2026-01-24 04:38:27,875 | INFO     | 
[2026-01-24 05:39:15] 2026-01-24 04:38:27,875 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-24 05:39:15] 2026-01-24 04:38:27,898 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,899 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,899 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,899 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,899 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,900 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,900 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,900 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,900 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,900 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,901 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,901 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-24 05:39:15] 2026-01-24 04:38:27,901 | INFO     | job 6978755155 has completed (purged errors)
[2026-01-24 05:39:15] 2026-01-24 04:38:27,902 | INFO     | overall cleanup function is called
[2026-01-24 05:39:15] 2026-01-24 04:38:28,910 | INFO     | --- collectZombieJob: --- 10, [11844]
[2026-01-24 05:39:15] 2026-01-24 04:38:28,911 | INFO     | zombie collector waiting for pid 11844
[2026-01-24 05:39:15] 2026-01-24 04:38:28,911 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-24 05:39:15] 2026-01-24 04:38:28,911 | INFO     | collected zombie processes
[2026-01-24 05:39:15] 2026-01-24 04:38:28,911 | INFO     | will attempt to kill all subprocesses of pid=11844
[2026-01-24 05:39:15] 2026-01-24 04:38:28,985 | INFO     | process IDs to be killed: [11844] (in reverse order)
[2026-01-24 05:39:15] 2026-01-24 04:38:29,675 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 05:39:15] 2026-01-24 04:38:29,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 05:39:15] 2026-01-24 04:38:29,677 | INFO     | did not find any defunct processes belonging to 11844
[2026-01-24 05:39:15] 2026-01-24 04:38:29,679 | INFO     | did not find any defunct processes belonging to 11844
[2026-01-24 05:39:15] 2026-01-24 04:38:29,680 | INFO     | ready for new job
[2026-01-24 05:39:15] 2026-01-24 04:38:29,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 05:39:15] 2026-01-24 04:38:29,682 | INFO     | **************************************
[2026-01-24 05:39:15] 2026-01-24 04:38:29,682 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 05:39:15] 2026-01-24 04:38:29,682 | INFO     | **************************************
[2026-01-24 05:39:15] 2026-01-24 04:38:29,682 | INFO     | 
[2026-01-24 05:39:15] 2026-01-24 04:38:29,683 | INFO     | pilot is running in a VM
[2026-01-24 05:39:15] 2026-01-24 04:38:29,683 | INFO     | architecture information:
[2026-01-24 05:39:15] 2026-01-24 04:38:29,683 | INFO     | executing command: cat /etc/os-release
[2026-01-24 05:39:15] 2026-01-24 04:38:29,705 | INFO     | cat /etc/os-release:
[2026-01-24 05:39:15] NAME="CentOS Linux"
[2026-01-24 05:39:15] VERSION="7 (Core)"
[2026-01-24 05:39:15] ID="centos"
[2026-01-24 05:39:15] ID_LIKE="rhel fedora"
[2026-01-24 05:39:15] VERSION_ID="7"
[2026-01-24 05:39:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 05:39:15] ANSI_COLOR="0;31"
[2026-01-24 05:39:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 05:39:15] HOME_URL="https://www.centos.org/"
[2026-01-24 05:39:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 05:39:15] 
[2026-01-24 05:39:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 05:39:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 05:39:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 05:39:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 05:39:15] 
[2026-01-24 05:39:15] 2026-01-24 04:38:29,705 | INFO     | **************************************
[2026-01-24 05:39:15] 2026-01-24 04:38:30,209 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-24 05:39:15] 2026-01-24 04:38:30,478 | INFO     | sufficient remaining disk space (495763587072 B)
[2026-01-24 05:39:15] 2026-01-24 04:38:30,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 05:39:15] 2026-01-24 04:38:30,479 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 05:39:15] 2026-01-24 04:38:30,479 | INFO     | update_server=False
[2026-01-24 05:39:15] 2026-01-24 04:38:30,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 05:39:15] 2026-01-24 04:38:30,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 05:39:15] 2026-01-24 04:38:30,580 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-24 05:39:15] 2026-01-24 04:38:30,581 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-24 05:39:15] 2026-01-24 04:38:30,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 05:39:15] 2026-01-24 04:38:30,581 | INFO     | will abort loop
[2026-01-24 05:39:15] 2026-01-24 04:38:30,985 | INFO     | all data control threads have been joined
[2026-01-24 05:39:15] 2026-01-24 04:38:31,260 | INFO     | all job control threads have been joined
[2026-01-24 05:39:15] 2026-01-24 04:38:31,485 | INFO     | [job] retrieve thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:31,587 | INFO     | [job] job monitor thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:31,717 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:31,750 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:31,793 | INFO     | [data] copytool_in thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:31,861 | INFO     | [job] validate thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:31,936 | INFO     | all payload control threads have been joined
[2026-01-24 05:39:15] 2026-01-24 04:38:31,992 | INFO     | [data] control thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:31,995 | INFO     | [payload] validate_post thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:32,140 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:32,267 | INFO     | [job] control thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:32,496 | INFO     | [data] copytool_out thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:32,538 | INFO     | [payload] failed_post thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:32,764 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:32,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 05:39:15] 2026-01-24 04:38:32,943 | INFO     | [payload] control thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:33,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 05:39:15] 2026-01-24 04:38:33,896 | INFO     | [job] queue monitor thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:37,699 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 05:39:15] 2026-01-24 04:38:59,485 | INFO     | PID=7393 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-24 05:39:15] 2026-01-24 04:38:59,485 | INFO     | .. there are 2 such processes running
[2026-01-24 05:39:15] 2026-01-24 04:38:59,486 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 05:39:15] 2026-01-24 04:38:59,486 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 05:39:15] 2026-01-24 04:38:59,486 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 05:39:15] 2026-01-24 04:39:04,686 | INFO     | [monitor] cgroup control has ended
[2026-01-24 05:39:15] 2026-01-24 04:39:05,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140052429178688)>', '<ExcThread(monitor, started 140052122277632)>']
[2026-01-24 05:39:15] 2026-01-24 04:39:05,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 05:39:15] 2026-01-24 04:39:05,522 | INFO     | [monitor] control thread has ended
[2026-01-24 05:39:15] 2026-01-24 04:39:10,047 | INFO     | all workflow threads have been joined
[2026-01-24 05:39:15] 2026-01-24 04:39:10,048 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 05:39:15] 2026-01-24 04:39:10,048 | INFO     | traces error code: 0
[2026-01-24 05:39:15] 2026-01-24 04:39:10,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 05:39:15] 2026-01-24 04:39:10,486 [wrapper] ==== pilot stdout END ====
[2026-01-24 05:39:15] 2026-01-24 04:39:10,585 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 05:39:15] 2026-01-24 04:39:10,695 [wrapper] pilotpid: 7393
[2026-01-24 05:39:15] 2026-01-24 04:39:10,875 [wrapper] Pilot exit status: 0
[2026-01-24 05:39:15] 2026-01-24 04:39:11,383 [wrapper] pandaids: 6978755155
[2026-01-24 05:39:15] 2026-01-24 04:39:12,428 [wrapper] cleanup supervisor_pilot 18391 7394
[2026-01-24 05:39:15] 2026-01-24 04:39:12,534 [wrapper] Test setup, not cleaning
[2026-01-24 05:39:15] 2026-01-24 04:39:12,622 [wrapper] apfmon messages muted
[2026-01-24 05:39:15] 2026-01-24 04:39:12,747 [wrapper] ==== wrapper stdout END ====
[2026-01-24 05:39:15] 2026-01-24 04:39:12,872 [wrapper] ==== wrapper stderr END ====
[2026-01-24 05:39:15]  *** Error codes and diagnostics ***
[2026-01-24 05:39:15]     "exeErrorCode": 0,
[2026-01-24 05:39:15]     "exeErrorDiag": "",
[2026-01-24 05:39:15]     "pilotErrorCode": 0,
[2026-01-24 05:39:15]     "pilotErrorDiag": "",
[2026-01-24 05:39:15]  *** Listing of results directory ***
[2026-01-24 05:39:15] total 666012
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc    584422 Jan 23 14:39 pilot3.tar.gz
[2026-01-24 05:39:15] -rwx------. 1 boinc boinc     36322 Jan 23 14:41 runpilot2-wrapper.sh
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc      5111 Jan 23 14:42 queuedata.json
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc       100 Jan 24 01:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 05:39:15] -rwxr-xr-x. 1 boinc boinc      7986 Jan 24 01:35 run_atlas
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc       105 Jan 24 01:35 job.xml
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc      6389 Jan 24 01:35 init_data.xml
[2026-01-24 05:39:15] -rw-r--r--. 2 boinc boinc 494150466 Jan 24 01:35 EVNT.48310824._000164.pool.root.1
[2026-01-24 05:39:15] -rw-r--r--. 2 boinc boinc     15845 Jan 24 01:35 start_atlas.sh
[2026-01-24 05:39:15] drwxrwx--x. 2 boinc boinc        68 Jan 24 01:35 shared
[2026-01-24 05:39:15] -rw-r--r--. 2 boinc boinc    597755 Jan 24 01:35 input.tar.gz
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc         0 Jan 24 01:35 boinc_lockfile
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc      2524 Jan 24 01:35 pandaJob.out
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc       415 Jan 24 01:41 workernode_map.json
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc   1004238 Jan 24 01:41 agis_schedconf.cvmfs.json
[2026-01-24 05:39:15] drwx------. 5 boinc boinc      4096 Jan 24 01:41 pilot3
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc 179020748 Jan 24 05:37 HITS.48310826._003308.pool.root.1
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc       532 Jan 24 05:37 boinc_task_state.xml
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc      1016 Jan 24 05:38 memory_monitor_summary.json
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc   1516246 Jan 24 05:38 agis_ddmendpoints.agis.ALL.json
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc    453910 Jan 24 05:38 log.48310826._003308.job.log.tgz.1
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc      6318 Jan 24 05:38 heartbeat.json
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc        95 Jan 24 05:38 pilot_heartbeat.json
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc      8192 Jan 24 05:39 boinc_mmap_file
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc        28 Jan 24 05:39 wrapper_checkpoint.txt
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc      5065 Jan 24 05:39 pilotlog.txt
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc   1993550 Jan 24 05:39 log.48310826._003308.job.log.1
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc       357 Jan 24 05:39 output.list
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc       620 Jan 24 05:39 runtime_log
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc   2467840 Jan 24 05:39 result.tar.gz
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc       655 Jan 24 05:39 ZoSKDmWaW38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmop2KDm254OFo.diag
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc      8816 Jan 24 05:39 runtime_log.err
[2026-01-24 05:39:15] -rw-r--r--. 1 boinc boinc     20703 Jan 24 05:39 stderr.txt
[2026-01-24 05:39:15] HITS file was successfully produced:
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc 179020748 Jan 24 05:37 shared/HITS.pool.root.1
[2026-01-24 05:39:15]  *** Contents of shared directory: ***
[2026-01-24 05:39:15] total 660412
[2026-01-24 05:39:15] -rw-r--r--. 2 boinc boinc 494150466 Jan 24 01:35 ATLAS.root_0
[2026-01-24 05:39:15] -rw-r--r--. 2 boinc boinc     15845 Jan 24 01:35 start_atlas.sh
[2026-01-24 05:39:15] -rw-r--r--. 2 boinc boinc    597755 Jan 24 01:35 input.tar.gz
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc 179020748 Jan 24 05:37 HITS.pool.root.1
[2026-01-24 05:39:15] -rw-------. 1 boinc boinc   2467840 Jan 24 05:39 result.tar.gz
05:39:17 (3323): run_atlas exited; CPU time 51444.849252
05:39:17 (3323): called boinc_finish(0)

</stderr_txt>
]]>

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