Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:29:01 (119859): wrapper (7.7.26015): starting
12:29:01 (119859): wrapper: running run_atlas (--nthreads 8)
[2026-01-23 12:29:01] Arguments: --nthreads 8
[2026-01-23 12:29:01] Threads: 8
[2026-01-23 12:29:01] Checking for CVMFS
[2026-01-23 12:29:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 12:29:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 12:29:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 12:29:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 12:29:02] 2.13.3.0 1019478 37390 144472 155444 0 58 25132317 39288833 6120 16776704 0 20631980 99.589 22812593 37851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-23 12:29:02] CVMFS is ok
[2026-01-23 12:29:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 12:29:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 12:29:02] Further information can be found at the LHC@home message board.
[2026-01-23 12:29:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 12:29:02] Checking for apptainer binary...
[2026-01-23 12:29:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 12:29:02] Running /usr/bin/apptainer --version
[2026-01-23 12:29:02] apptainer version 1.4.5-2.el9
[2026-01-23 12:29:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 12:29:02] c-210-25.aglt2.org
[2026-01-23 12:29:02] apptainer works
[2026-01-23 12:29:02] Set ATHENA_PROC_NUMBER=8
[2026-01-23 12:29:02] Set ATHENA_CORE_NUMBER=8
[2026-01-23 12:29:02] Starting ATLAS job with PandaID=6970289063
[2026-01-23 12:29:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 15:43:41]  *** The last 200 lines of the pilot log: ***
[2026-01-23 15:43:41] 2026-01-23 20:42:53,392 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-23 15:43:41] 2026-01-23 20:42:53,430 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.043325
[2026-01-23 15:43:41] 2026-01-23 20:42:53,460 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6970289063/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 15:43:41] 2026-01-23 20:42:53,461 | INFO     | extracted standard info from prmon json
[2026-01-23 15:43:41] 2026-01-23 20:42:53,461 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 15:43:41] 2026-01-23 20:42:53,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 15:43:41] 2026-01-23 20:42:53,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 15:43:41] 2026-01-23 20:42:53,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 15:43:41] 2026-01-23 20:42:53,469 | INFO     | fitting pss+swap vs Time
[2026-01-23 15:43:41] 2026-01-23 20:42:53,471 | INFO     | sum of square deviations: 2126779316.9526334
[2026-01-23 15:43:41] 2026-01-23 20:42:53,496 | INFO     | sum of deviations: -52011130283.98948
[2026-01-23 15:43:41] 2026-01-23 20:42:53,497 | INFO     | mean x: 1769195143.0157895
[2026-01-23 15:43:41] 2026-01-23 20:42:53,497 | INFO     | mean y: 2553504.6631578947
[2026-01-23 15:43:41] 2026-01-23 20:42:53,497 | INFO     | intersect: 43268838044.72717
[2026-01-23 15:43:41] 2026-01-23 20:42:53,497 | INFO     | chi2: 3.621584316779989
[2026-01-23 15:43:41] 2026-01-23 20:42:53,498 | INFO     | sum of square deviations: 1963280558.0864792
[2026-01-23 15:43:41] 2026-01-23 20:42:53,499 | INFO     | sum of deviations: -13711727724.140545
[2026-01-23 15:43:41] 2026-01-23 20:42:53,499 | INFO     | mean x: 1769194990.5297298
[2026-01-23 15:43:41] 2026-01-23 20:42:53,499 | INFO     | mean y: 2588866.3891891893
[2026-01-23 15:43:41] 2026-01-23 20:42:53,499 | INFO     | intersect: 12358805557.446804
[2026-01-23 15:43:41] 2026-01-23 20:42:53,503 | INFO     | chi2: 1.3796454562691183
[2026-01-23 15:43:41] 2026-01-23 20:42:53,503 | INFO     | current chi2=1.3796454562691183 (change=61.90491962656321 %)
[2026-01-23 15:43:41] 2026-01-23 20:42:53,504 | INFO     | sum of square deviations: 1808386611.644441
[2026-01-23 15:43:41] 2026-01-23 20:42:53,505 | INFO     | sum of deviations: -13171289163.488888
[2026-01-23 15:43:41] 2026-01-23 20:42:53,505 | INFO     | mean x: 1769194838.0444446
[2026-01-23 15:43:41] 2026-01-23 20:42:53,505 | INFO     | mean y: 2589398.561111111
[2026-01-23 15:43:41] 2026-01-23 20:42:53,505 | INFO     | intersect: 12888427331.88073
[2026-01-23 15:43:41] 2026-01-23 20:42:53,505 | INFO     | chi2: 1.3782338996509214
[2026-01-23 15:43:41] 2026-01-23 20:42:53,506 | INFO     | current chi2=1.3782338996509214 (change=0.10231299728367138 %)
[2026-01-23 15:43:41] 2026-01-23 20:42:53,506 | INFO     | right removable region: 179
[2026-01-23 15:43:41] 2026-01-23 20:42:53,506 | INFO     | sum of square deviations: 1963220778.0864792
[2026-01-23 15:43:41] 2026-01-23 20:42:53,511 | INFO     | sum of deviations: -75518331316.70268
[2026-01-23 15:43:41] 2026-01-23 20:42:53,512 | INFO     | mean x: 1769195295.5297298
[2026-01-23 15:43:41] 2026-01-23 20:42:53,512 | INFO     | mean y: 2575083.945945946
[2026-01-23 15:43:41] 2026-01-23 20:42:53,512 | INFO     | intersect: 68057415366.34669
[2026-01-23 15:43:41] 2026-01-23 20:42:53,512 | INFO     | chi2: 2.4121414747563037
[2026-01-23 15:43:41] 2026-01-23 20:42:53,512 | INFO     | current chi2=2.4121414747563037 (change=33.39540754083619 %)
[2026-01-23 15:43:41] 2026-01-23 20:42:53,513 | INFO     | sum of square deviations: 1808267051.644441
[2026-01-23 15:43:41] 2026-01-23 20:42:53,514 | INFO     | sum of deviations: -68161887371.73334
[2026-01-23 15:43:41] 2026-01-23 20:42:53,514 | INFO     | mean x: 1769195448.0444446
[2026-01-23 15:43:41] 2026-01-23 20:42:53,514 | INFO     | mean y: 2567816.716666667
[2026-01-23 15:43:41] 2026-01-23 20:42:53,514 | INFO     | intersect: 66691667061.50047
[2026-01-23 15:43:41] 2026-01-23 20:42:53,519 | INFO     | chi2: 2.3953088182154483
[2026-01-23 15:43:41] 2026-01-23 20:42:53,519 | INFO     | current chi2=2.3953088182154483 (change=0.6978304016167213 %)
[2026-01-23 15:43:41] 2026-01-23 20:42:53,519 | INFO     | left removable region: 20
[2026-01-23 15:43:41] 2026-01-23 20:42:53,520 | INFO     | sum of square deviations: 1246329128.0377407
[2026-01-23 15:43:41] 2026-01-23 20:42:53,521 | INFO     | sum of deviations: -22645051616.490555
[2026-01-23 15:43:41] 2026-01-23 20:42:53,521 | INFO     | mean x: 1769195417.6037736
[2026-01-23 15:43:41] 2026-01-23 20:42:53,521 | INFO     | mean y: 2597513.150943396
[2026-01-23 15:43:41] 2026-01-23 20:42:53,521 | INFO     | intersect: 32147815537.841797
[2026-01-23 15:43:41] 2026-01-23 20:42:53,521 | INFO     | chi2: 0.07961011791211162
[2026-01-23 15:43:41] 2026-01-23 20:42:53,522 | INFO     | current memory leak: -18.17 B/s (using 159 data points, chi2=0.08)
[2026-01-23 15:43:41] 2026-01-23 20:42:53,522 | INFO     | could have reported an average CPU frequency of 2602 MHz (10 samples)
[2026-01-23 15:43:41] 2026-01-23 20:42:53,522 | INFO     | ..............................
[2026-01-23 15:43:41] 2026-01-23 20:42:53,522 | INFO     | . Timing measurements:
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | . get job = 0 s
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | . initial setup = 2 s
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | . payload setup = 5 s
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | . stage-in = 0 s
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | . payload execution = 11550 s
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | . stage-out = 4 s
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | . log creation = 0 s
[2026-01-23 15:43:41] 2026-01-23 20:42:53,527 | INFO     | ..............................
[2026-01-23 15:43:41] 2026-01-23 20:42:54,189 | INFO     | 
[2026-01-23 15:43:41] 2026-01-23 20:42:54,190 | INFO     | job summary report
[2026-01-23 15:43:41] 2026-01-23 20:42:54,194 | INFO     | --------------------------------------------------
[2026-01-23 15:43:41] 2026-01-23 20:42:54,194 | INFO     | PanDA job id: 6970289063
[2026-01-23 15:43:41] 2026-01-23 20:42:54,194 | INFO     | task id: 48215263
[2026-01-23 15:43:41] 2026-01-23 20:42:54,194 | INFO     | errors: (none)
[2026-01-23 15:43:41] 2026-01-23 20:42:54,194 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 15:43:41] 2026-01-23 20:42:54,194 | INFO     | pilot state: finished 
[2026-01-23 15:43:41] 2026-01-23 20:42:54,194 | INFO     | transexitcode: 0
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | exeerrorcode: 0
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | exeerrordiag: 
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | exitcode: 0
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | exitmsg: OK
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | cpuconsumptiontime: 29400 s
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | nevents: 400
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | neventsw: 0
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | pid: 130029
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | pgrp: 130029
[2026-01-23 15:43:41] 2026-01-23 20:42:54,195 | INFO     | corecount: 8
[2026-01-23 15:43:41] 2026-01-23 20:42:54,198 | INFO     | event service: False
[2026-01-23 15:43:41] 2026-01-23 20:42:54,198 | INFO     | sizes: {0: 2283952, 4: 2284214, 11: 2284242, 11559: 2313782, 11564: 2322780, 11567: 2322864, 11605: 2323186}
[2026-01-23 15:43:41] 2026-01-23 20:42:54,198 | INFO     | --------------------------------------------------
[2026-01-23 15:43:41] 2026-01-23 20:42:54,198 | INFO     | 
[2026-01-23 15:43:41] 2026-01-23 20:42:54,198 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-23 15:43:41] 2026-01-23 20:42:54,259 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,259 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,259 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,259 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,260 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,260 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,260 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,260 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,260 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,260 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,260 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 15:43:41] 2026-01-23 20:42:54,261 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,303 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 15:43:41] 2026-01-23 20:42:54,303 | INFO     | job 6970289063 has completed (purged errors)
[2026-01-23 15:43:41] 2026-01-23 20:42:54,303 | INFO     | overall cleanup function is called
[2026-01-23 15:43:41] 2026-01-23 20:42:54,665 | INFO     | PID=123535 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-23 15:43:41] 2026-01-23 20:42:54,665 | INFO     | .. there are 7 such processes running
[2026-01-23 15:43:41] 2026-01-23 20:42:55,314 | INFO     | --- collectZombieJob: --- 10, [130029]
[2026-01-23 15:43:41] 2026-01-23 20:42:55,314 | INFO     | zombie collector waiting for pid 130029
[2026-01-23 15:43:41] 2026-01-23 20:42:55,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 15:43:41] 2026-01-23 20:42:55,314 | INFO     | collected zombie processes
[2026-01-23 15:43:41] 2026-01-23 20:42:55,314 | INFO     | will attempt to kill all subprocesses of pid=130029
[2026-01-23 15:43:41] 2026-01-23 20:42:55,849 | INFO     | process IDs to be killed: [130029] (in reverse order)
[2026-01-23 15:43:41] 2026-01-23 20:42:55,999 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 15:43:41] 2026-01-23 20:42:55,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 15:43:41] 2026-01-23 20:42:56,007 | INFO     | did not find any defunct processes belonging to 130029
[2026-01-23 15:43:41] 2026-01-23 20:42:56,014 | INFO     | did not find any defunct processes belonging to 130029
[2026-01-23 15:43:41] 2026-01-23 20:42:56,015 | INFO     | ready for new job
[2026-01-23 15:43:41] 2026-01-23 20:42:56,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 15:43:41] 2026-01-23 20:42:56,017 | INFO     | ***************************************
[2026-01-23 15:43:41] 2026-01-23 20:42:56,017 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-23 15:43:41] 2026-01-23 20:42:56,017 | INFO     | ***************************************
[2026-01-23 15:43:41] 2026-01-23 20:42:56,017 | INFO     | 
[2026-01-23 15:43:41] 2026-01-23 20:42:56,019 | INFO     | architecture information:
[2026-01-23 15:43:41] 2026-01-23 20:42:56,024 | INFO     | executing command: cat /etc/os-release
[2026-01-23 15:43:41] 2026-01-23 20:42:56,044 | INFO     | cat /etc/os-release:
[2026-01-23 15:43:41] NAME="CentOS Linux"
[2026-01-23 15:43:41] VERSION="7 (Core)"
[2026-01-23 15:43:41] ID="centos"
[2026-01-23 15:43:41] ID_LIKE="rhel fedora"
[2026-01-23 15:43:41] VERSION_ID="7"
[2026-01-23 15:43:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 15:43:41] ANSI_COLOR="0;31"
[2026-01-23 15:43:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 15:43:41] HOME_URL="https://www.centos.org/"
[2026-01-23 15:43:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 15:43:41] 
[2026-01-23 15:43:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 15:43:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 15:43:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 15:43:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 15:43:41] 
[2026-01-23 15:43:41] 2026-01-23 20:42:56,044 | INFO     | ***************************************
[2026-01-23 15:43:41] 2026-01-23 20:42:56,548 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-23 15:43:41] 2026-01-23 20:42:56,594 | INFO     | sufficient remaining disk space (51436847104 B)
[2026-01-23 15:43:41] 2026-01-23 20:42:56,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 15:43:41] 2026-01-23 20:42:56,595 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 15:43:41] 2026-01-23 20:42:56,595 | INFO     | update_server=False
[2026-01-23 15:43:41] 2026-01-23 20:42:56,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 15:43:41] 2026-01-23 20:42:56,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 15:43:41] 2026-01-23 20:42:56,675 | INFO     | all job control threads have been joined
[2026-01-23 15:43:41] 2026-01-23 20:42:56,834 | INFO     | all data control threads have been joined
[2026-01-23 15:43:41] 2026-01-23 20:42:57,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 15:43:41] 2026-01-23 20:42:57,448 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 15:43:41] 2026-01-23 20:42:57,448 | INFO     | aborting loop
[2026-01-23 15:43:41] 2026-01-23 20:42:57,601 | INFO     | [job] retrieve thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:57,681 | INFO     | [job] control thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:57,707 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:57,725 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:57,731 | INFO     | [data] copytool_in thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:57,834 | INFO     | [payload] failed_post thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:57,840 | INFO     | [data] control thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:57,887 | INFO     | all payload control threads have been joined
[2026-01-23 15:43:41] 2026-01-23 20:42:57,938 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:58,403 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:58,454 | INFO     | [job] job monitor thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:58,603 | INFO     | [data] copytool_out thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:58,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 15:43:41] 2026-01-23 20:42:58,809 | INFO     | [job] validate thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:58,892 | INFO     | [payload] control thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:59,084 | INFO     | [payload] validate_post thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:42:59,777 | INFO     | [job] queue monitor thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:43:01,377 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 15:43:41] 2026-01-23 20:43:27,235 | INFO     | PID=123535 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-23 15:43:41] 2026-01-23 20:43:27,235 | INFO     | .. there are 7 such processes running
[2026-01-23 15:43:41] 2026-01-23 20:43:27,235 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 15:43:41] 2026-01-23 20:43:27,235 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 15:43:41] 2026-01-23 20:43:27,235 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 15:43:41] 2026-01-23 20:43:33,400 | INFO     | [monitor] cgroup control has ended
[2026-01-23 15:43:41] 2026-01-23 20:43:34,635 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140051492955968)>', '<ExcThread(monitor, started 140051132430080)>']
[2026-01-23 15:43:41] 2026-01-23 20:43:35,286 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 15:43:41] 2026-01-23 20:43:35,286 | INFO     | [monitor] control thread has ended
[2026-01-23 15:43:41] 2026-01-23 20:43:39,661 | INFO     | all workflow threads have been joined
[2026-01-23 15:43:41] 2026-01-23 20:43:39,661 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 15:43:41] 2026-01-23 20:43:39,666 | INFO     | traces error code: 0
[2026-01-23 15:43:41] 2026-01-23 20:43:39,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 15:43:41] 2026-01-23 20:43:40,778 [wrapper] ==== pilot stdout END ====
[2026-01-23 15:43:41] 2026-01-23 20:43:40,807 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 15:43:41] 2026-01-23 20:43:40,830 [wrapper] pilotpid: 123535
[2026-01-23 15:43:41] 2026-01-23 20:43:40,863 [wrapper] Pilot exit status: 0
[2026-01-23 15:43:41] 2026-01-23 20:43:40,970 [wrapper] pandaids: 6970289063
[2026-01-23 15:43:41] 2026-01-23 20:43:41,230 [wrapper] cleanup supervisor_pilot  414711 123536
[2026-01-23 15:43:41] 2026-01-23 20:43:41,254 [wrapper] Test setup, not cleaning
[2026-01-23 15:43:41] 2026-01-23 20:43:41,277 [wrapper] apfmon messages muted
[2026-01-23 15:43:41] 2026-01-23 20:43:41,303 [wrapper] ==== wrapper stdout END ====
[2026-01-23 15:43:41] 2026-01-23 20:43:41,348 [wrapper] ==== wrapper stderr END ====
[2026-01-23 15:43:41]  *** Error codes and diagnostics ***
[2026-01-23 15:43:41]     "exeErrorCode": 0,
[2026-01-23 15:43:41]     "exeErrorDiag": "",
[2026-01-23 15:43:41]     "pilotErrorCode": 0,
[2026-01-23 15:43:41]     "pilotErrorDiag": "",
[2026-01-23 15:43:41]  *** Listing of results directory ***
[2026-01-23 15:43:41] total 730188
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 23:50 pilot3.tar.gz
[2026-01-23 15:43:41] -rwx------. 1 boincer umatlas     36322 Jan 14 23:54 runpilot2-wrapper.sh
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 23:54 queuedata.json
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas       100 Jan 23 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 15:43:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 23 12:29 run_atlas
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas       105 Jan 23 12:29 job.xml
[2026-01-23 15:43:41] -rw-r--r--. 2 boincer umatlas 596617661 Jan 23 12:29 EVNT.32794306._001759.pool.root.1
[2026-01-23 15:43:41] -rw-r--r--. 2 boincer umatlas     15847 Jan 23 12:29 start_atlas.sh
[2026-01-23 15:43:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 23 12:29 shared
[2026-01-23 15:43:41] -rw-r--r--. 2 boincer umatlas    592404 Jan 23 12:29 input.tar.gz
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas         0 Jan 23 12:29 boinc_lockfile
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas      2509 Jan 23 12:29 pandaJob.out
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas        57 Jan 23 12:29 setup.sh.local
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas   1004254 Jan 23 12:29 agis_schedconf.cvmfs.json
[2026-01-23 15:43:41] drwx------. 5 boincer umatlas      4096 Jan 23 12:29 pilot3
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas      6658 Jan 23 15:37 init_data.xml
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas 143225041 Jan 23 15:39 HITS.48215263._045174.pool.root.1
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas       530 Jan 23 15:39 boinc_task_state.xml
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas      1038 Jan 23 15:42 memory_monitor_summary.json
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas   1516246 Jan 23 15:42 agis_ddmendpoints.agis.ALL.json
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas    411458 Jan 23 15:42 log.48215263._045174.job.log.tgz.1
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas        95 Jan 23 15:42 pilot_heartbeat.json
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas      7826 Jan 23 15:42 heartbeat.json
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 23 15:43 boinc_mmap_file
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas        27 Jan 23 15:43 wrapper_checkpoint.txt
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas      4822 Jan 23 15:43 pilotlog.txt
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas   1553077 Jan 23 15:43 log.48215263._045174.job.log.1
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas       357 Jan 23 15:43 output.list
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas       620 Jan 23 15:43 runtime_log
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas   1986560 Jan 23 15:43 result.tar.gz
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas      9343 Jan 23 15:43 runtime_log.err
[2026-01-23 15:43:41] -rw-------. 1 boincer umatlas       655 Jan 23 15:43 2MYNDm3XU08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCFuKDmXiGGjm.diag
[2026-01-23 15:43:41] -rw-r--r--. 1 boincer umatlas     21237 Jan 23 15:43 stderr.txt
[2026-01-23 15:43:41] HITS file was successfully produced:
[2026-01-23 15:43:42] -rw-------. 1 boincer umatlas 143225041 Jan 23 15:39 shared/HITS.pool.root.1
[2026-01-23 15:43:42]  *** Contents of shared directory: ***
[2026-01-23 15:43:42] total 725052
[2026-01-23 15:43:42] -rw-r--r--. 2 boincer umatlas 596617661 Jan 23 12:29 ATLAS.root_0
[2026-01-23 15:43:42] -rw-r--r--. 2 boincer umatlas     15847 Jan 23 12:29 start_atlas.sh
[2026-01-23 15:43:42] -rw-r--r--. 2 boincer umatlas    592404 Jan 23 12:29 input.tar.gz
[2026-01-23 15:43:42] -rw-------. 1 boincer umatlas 143225041 Jan 23 15:39 HITS.pool.root.1
[2026-01-23 15:43:42] -rw-------. 1 boincer umatlas   1986560 Jan 23 15:43 result.tar.gz
15:43:43 (119859): run_atlas exited; CPU time 29661.195177
15:43:43 (119859): called boinc_finish(0)

</stderr_txt>
]]>

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