Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:33:47 (748): wrapper (7.7.26015): starting
17:33:47 (748): wrapper: running run_atlas (--nthreads 8)
[2026-01-23 17:33:47] Arguments: --nthreads 8
[2026-01-23 17:33:47] Threads: 8
[2026-01-23 17:33:47] Checking for CVMFS
[2026-01-23 17:33:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 17:33:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 17:33:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 17:33:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 17:33:47] 2.11.0.0 4315 72457 70732 155442 0 1 3964053 4096000 0 130560 1 4745103 99.677 3578293 441 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-23 17:33:47] CVMFS is ok
[2026-01-23 17:33:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 17:33:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 17:33:47] Further information can be found at the LHC@home message board.
[2026-01-23 17:33:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 17:33:47] Checking for apptainer binary...
[2026-01-23 17:33:47] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-23 17:33:47] apptainer is not installed, using version from CVMFS
[2026-01-23 17:33:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 17:33:48] WARNING: Environment variable TMPDIR already has value [/tmp/job_11041299/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment fat-node004
[2026-01-23 17:33:48] apptainer works
[2026-01-23 17:33:48] Set ATHENA_PROC_NUMBER=8
[2026-01-23 17:33:48] Set ATHENA_CORE_NUMBER=8
[2026-01-23 17:33:48] Starting ATLAS job with PandaID=6976469650
[2026-01-23 17:33:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11041299/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 19:52:40]  *** The last 200 lines of the pilot log: ***
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | mean y: 3141775.4135338347
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | intersect: -677548191355.0242
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | chi2: 12.661617181825038
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | sum of square deviations: 650252192.0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | sum of deviations: 313972415061.5
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | mean x: 1769190130.5
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | mean y: 3207950.1640625
[2026-01-23 19:52:40] 2026-01-23 18:52:08,582 | INFO     | intersect: -854245197222.5405
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | chi2: 10.61194506572125
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | current chi2=10.61194506572125 (change=16.188075240862325 %)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | right removable region: 127
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | sum of square deviations: 650252192.0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | sum of deviations: 217051399595.5
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | mean x: 1769190435.5
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | mean y: 3261739.7265625
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | intersect: -590544936175.8402
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | chi2: 7.353432714621941
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | current chi2=7.353432714621941 (change=41.923431983259334 %)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,583 | INFO     | sum of square deviations: 576985702.0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | sum of deviations: 163957710825.0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | mean x: 1769190588.0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | mean y: 3372182.138211382
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | intersect: -502734282869.17487
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | chi2: 4.398886459923898
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | current chi2=4.398886459923898 (change=40.17914312077776 %)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | sum of square deviations: 509440249.5
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | sum of deviations: 128359892330.00009
[2026-01-23 19:52:40] 2026-01-23 18:52:08,584 | INFO     | mean x: 1769190740.5
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | mean y: 3452112.1525423727
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | intersect: -445766455516.2653
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | chi2: 3.4593386426113484
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | current chi2=3.4593386426113484 (change=21.35876490271595 %)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | left removable region: 30
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | sum of square deviations: 282974608.0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | sum of deviations: 127644233497.99998
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | mean x: 1769191015.0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | mean y: 3650862.7731958763
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | intersect: -798043328042.2161
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | chi2: 0.31715722936526936
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | current memory leak: 451.08 B/s (using 97 data points, chi2=0.32)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,585 | INFO     | could have reported an average CPU frequency of 2365 MHz (8 samples)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | ..............................
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . Timing measurements:
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . get job = 0 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . initial setup = 3 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . payload setup = 205 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . stage-in = 0 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . payload execution = 8064 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . stage-out = 0 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | . log creation = 0 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,586 | INFO     | ..............................
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | 
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | job summary report
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | --------------------------------------------------
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | PanDA job id: 6976469650
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | task id: 47961985
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | errors: (none)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 19:52:40] 2026-01-23 18:52:08,819 | INFO     | pilot state: finished 
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | transexitcode: 0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | exeerrorcode: 0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | exeerrordiag: 
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | exitcode: 0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | exitmsg: OK
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | cpuconsumptiontime: 54965 s
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | nevents: 350
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | neventsw: 0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | pid: 12388
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | pgrp: 12388
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | corecount: 8
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | event service: False
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | sizes: {0: 2284394, 1: 2284966, 11: 2284966, 8273: 2313571, 8274: 2322595, 8276: 2322651, 8279: 2323025}
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | --------------------------------------------------
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | 
[2026-01-23 19:52:40] 2026-01-23 18:52:08,820 | INFO     | executing command: ls -lF /tmp/job_11041299/atlas/pilot/slots/0
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,830 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,831 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 19:52:40] 2026-01-23 18:52:08,831 | INFO     | job 6976469650 has completed (purged errors)
[2026-01-23 19:52:40] 2026-01-23 18:52:08,831 | INFO     | overall cleanup function is called
[2026-01-23 19:52:40] 2026-01-23 18:52:09,773 | WARNING  | process 12388 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 19:52:40] 2026-01-23 18:52:09,838 | INFO     | --- collectZombieJob: --- 10, [12388]
[2026-01-23 19:52:40] 2026-01-23 18:52:09,838 | INFO     | zombie collector waiting for pid 12388
[2026-01-23 19:52:40] 2026-01-23 18:52:09,838 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 19:52:40] 2026-01-23 18:52:09,838 | INFO     | collected zombie processes
[2026-01-23 19:52:40] 2026-01-23 18:52:09,838 | INFO     | will attempt to kill all subprocesses of pid=12388
[2026-01-23 19:52:40] 2026-01-23 18:52:09,858 | INFO     | using path: /tmp/job_11041299/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 19:52:40] 2026-01-23 18:52:09,859 | INFO     | using path: /tmp/job_11041299/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 19:52:40] 2026-01-23 18:52:09,859 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-23 19:52:40] 2026-01-23 18:52:09,859 | WARNING  | maxPSS not found in memory monitor output
[2026-01-23 19:52:40] 2026-01-23 18:52:09,859 | INFO     | skipping file size check of payload stdout file (/tmp/job_11041299/atlas/pilot/slots/0/PanDA_Pilot-6976469650/payload.stdout) since it has not been created yet
[2026-01-23 19:52:40] 2026-01-23 18:52:09,860 | INFO     | executing command: df -mP /tmp/job_11041299/atlas/pilot/slots/0
[2026-01-23 19:52:40] 2026-01-23 18:52:09,867 | INFO     | sufficient remaining disk space (467885096960 B)
[2026-01-23 19:52:40] 2026-01-23 18:52:09,867 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-01-23 19:52:40] 2026-01-23 18:52:09,867 | INFO     | output file size check: skipping output file /tmp/job_11041299/atlas/pilot/slots/0/PanDA_Pilot-6976469650/HITS.47961985._001460.pool.root.1 since it does not exist
[2026-01-23 19:52:40] 2026-01-23 18:52:10,016 | INFO     | process IDs to be killed: [12388] (in reverse order)
[2026-01-23 19:52:40] 2026-01-23 18:52:10,030 | INFO     | number of running child processes to parent process 12388: 1
[2026-01-23 19:52:40] 2026-01-23 18:52:10,030 | INFO     | maximum number of monitored processes: 16
[2026-01-23 19:52:40] 2026-01-23 18:52:10,030 | INFO     | aborting job monitoring since job object (job id=6976469650) has expired
[2026-01-23 19:52:40] 2026-01-23 18:52:10,051 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 19:52:40] 2026-01-23 18:52:10,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 19:52:40] 2026-01-23 18:52:10,054 | INFO     | did not find any defunct processes belonging to 12388
[2026-01-23 19:52:40] 2026-01-23 18:52:10,057 | INFO     | did not find any defunct processes belonging to 12388
[2026-01-23 19:52:40] 2026-01-23 18:52:10,057 | INFO     | ready for new job
[2026-01-23 19:52:40] 2026-01-23 18:52:10,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 19:52:40] 2026-01-23 18:52:10,058 | INFO     | **************************************
[2026-01-23 19:52:40] 2026-01-23 18:52:10,058 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 19:52:40] 2026-01-23 18:52:10,058 | INFO     | **************************************
[2026-01-23 19:52:40] 2026-01-23 18:52:10,058 | INFO     | 
[2026-01-23 19:52:40] 2026-01-23 18:52:10,073 | INFO     | architecture information:
[2026-01-23 19:52:40] 2026-01-23 18:52:10,073 | INFO     | executing command: cat /etc/os-release
[2026-01-23 19:52:40] 2026-01-23 18:52:10,080 | INFO     | cat /etc/os-release:
[2026-01-23 19:52:40] NAME="CentOS Linux"
[2026-01-23 19:52:40] VERSION="7 (Core)"
[2026-01-23 19:52:40] ID="centos"
[2026-01-23 19:52:40] ID_LIKE="rhel fedora"
[2026-01-23 19:52:40] VERSION_ID="7"
[2026-01-23 19:52:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 19:52:40] ANSI_COLOR="0;31"
[2026-01-23 19:52:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 19:52:40] HOME_URL="https://www.centos.org/"
[2026-01-23 19:52:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 19:52:40] 
[2026-01-23 19:52:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 19:52:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 19:52:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 19:52:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 19:52:40] 
[2026-01-23 19:52:40] 2026-01-23 18:52:10,080 | INFO     | **************************************
[2026-01-23 19:52:40] 2026-01-23 18:52:10,583 | INFO     | executing command: df -mP /tmp/job_11041299/atlas/pilot/slots/0
[2026-01-23 19:52:40] 2026-01-23 18:52:10,588 | INFO     | sufficient remaining disk space (467886145536 B)
[2026-01-23 19:52:40] 2026-01-23 18:52:10,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 19:52:40] 2026-01-23 18:52:10,588 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 19:52:40] 2026-01-23 18:52:10,588 | INFO     | update_server=False
[2026-01-23 19:52:40] 2026-01-23 18:52:10,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 19:52:40] 2026-01-23 18:52:10,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 19:52:40] 2026-01-23 18:52:10,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 19:52:40] 2026-01-23 18:52:10,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 19:52:40] 2026-01-23 18:52:10,589 | INFO     | will abort loop
[2026-01-23 19:52:40] 2026-01-23 18:52:10,931 | INFO     | all data control threads have been joined
[2026-01-23 19:52:40] 2026-01-23 18:52:10,954 | INFO     | all job control threads have been joined
[2026-01-23 19:52:40] 2026-01-23 18:52:11,182 | INFO     | all payload control threads have been joined
[2026-01-23 19:52:40] 2026-01-23 18:52:11,593 | INFO     | [job] retrieve thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:11,594 | INFO     | [job] queue monitor thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:11,594 | INFO     | [job] job monitor thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:11,728 | INFO     | [data] copytool_in thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:11,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 19:52:40] 2026-01-23 18:52:11,876 | INFO     | [monitor] cgroup control has ended
[2026-01-23 19:52:40] 2026-01-23 18:52:11,916 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:11,936 | INFO     | [data] control thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:11,960 | INFO     | [job] control thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:12,187 | INFO     | [payload] control thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:12,470 | INFO     | [payload] validate_post thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:12,523 | INFO     | [job] validate thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:12,593 | INFO     | [payload] failed_post thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:12,594 | INFO     | [data] copytool_out thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:12,941 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:13,031 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:15,825 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:21,341 | INFO     | job.realtimelogging is not enabled
[2026-01-23 19:52:40] 2026-01-23 18:52:22,346 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 19:52:40] 2026-01-23 18:52:24,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065283840)>']
[2026-01-23 19:52:40] 2026-01-23 18:52:29,221 | INFO     | all workflow threads have been joined
[2026-01-23 19:52:40] 2026-01-23 18:52:29,221 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 19:52:40] 2026-01-23 18:52:29,221 | INFO     | traces error code: 0
[2026-01-23 19:52:40] 2026-01-23 18:52:29,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 19:52:40] 2026-01-23 18:52:40,142 | INFO     | PID=5902 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-23 19:52:40] 2026-01-23 18:52:40,142 | INFO     | .. there are 2 such processes running
[2026-01-23 19:52:40] 2026-01-23 18:52:40,142 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 19:52:40] 2026-01-23 18:52:40,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 19:52:40] 2026-01-23 18:52:40,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 19:52:40] 2026-01-23 18:52:40,142 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 19:52:40] 2026-01-23 18:52:40,142 | INFO     | [monitor] control thread has ended
[2026-01-23 19:52:40] 2026-01-23 18:52:40,195 [wrapper] ==== pilot stdout END ====
[2026-01-23 19:52:40] 2026-01-23 18:52:40,197 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 19:52:40] 2026-01-23 18:52:40,198 [wrapper] pilotpid: 5902
[2026-01-23 19:52:40] 2026-01-23 18:52:40,199 [wrapper] Pilot exit status: 0
[2026-01-23 19:52:40] 2026-01-23 18:52:40,203 [wrapper] pandaids: 6976469650
[2026-01-23 19:52:40] 2026-01-23 18:52:40,224 [wrapper] cleanup supervisor_pilot 16811 5903
[2026-01-23 19:52:40] 2026-01-23 18:52:40,226 [wrapper] Test setup, not cleaning
[2026-01-23 19:52:40] 2026-01-23 18:52:40,227 [wrapper] apfmon messages muted
[2026-01-23 19:52:40] 2026-01-23 18:52:40,228 [wrapper] ==== wrapper stdout END ====
[2026-01-23 19:52:40] 2026-01-23 18:52:40,229 [wrapper] ==== wrapper stderr END ====
[2026-01-23 19:52:40]  *** Error codes and diagnostics ***
[2026-01-23 19:52:40]     "exeErrorCode": 0,
[2026-01-23 19:52:40]     "exeErrorDiag": "",
[2026-01-23 19:52:40]     "pilotErrorCode": 0,
[2026-01-23 19:52:40]     "pilotErrorDiag": "",
[2026-01-23 19:52:40]  *** Listing of results directory ***
[2026-01-23 19:52:40] total 755756
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user    584422 Jan 20 15:43 pilot3.tar.gz
[2026-01-23 19:52:40] -rwx------ 1 mf493845 unix-user     36322 Jan 20 15:55 runpilot2-wrapper.sh
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user      5111 Jan 20 15:57 queuedata.json
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user       100 Jan 23 15:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 19:52:40] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 23 15:48 run_atlas
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user       105 Jan 23 15:48 job.xml
[2026-01-23 19:52:40] -rw-r--r-- 2 mf493845 unix-user 414352345 Jan 23 17:33 EVNT.47961981._000048.pool.root.1
[2026-01-23 19:52:40] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 23 17:33 start_atlas.sh
[2026-01-23 19:52:40] drwxrwx--x 2 mf493845 unix-user       100 Jan 23 17:33 shared
[2026-01-23 19:52:40] -rw-r--r-- 2 mf493845 unix-user    597964 Jan 23 17:33 input.tar.gz
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user      6390 Jan 23 17:33 init_data.xml
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user         0 Jan 23 17:33 boinc_setup_complete
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user      8192 Jan 23 17:33 boinc_mmap_file
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user         0 Jan 23 17:33 boinc_lockfile
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user      2876 Jan 23 17:33 pandaJob.out
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user   1004246 Jan 23 17:33 agis_schedconf.cvmfs.json
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user   1516246 Jan 23 17:33 agis_ddmendpoints.agis.ALL.json
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user       414 Jan 23 17:33 workernode_map.json
[2026-01-23 19:52:40] drwx------ 5 mf493845 unix-user       440 Jan 23 17:33 pilot3
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user        95 Jan 23 19:51 pilot_heartbeat.json
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user 350592003 Jan 23 19:51 HITS.47961985._001460.pool.root.1
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user      1040 Jan 23 19:52 memory_monitor_summary.json
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user   1302650 Jan 23 19:52 log.47961985._001460.job.log.tgz.1
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user      6887 Jan 23 19:52 heartbeat.json
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user       819 Jan 23 19:52 pilotlog.txt
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user   1215617 Jan 23 19:52 log.47961985._001460.job.log.1
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user       353 Jan 23 19:52 output.list
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user       620 Jan 23 19:52 runtime_log
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user   2539520 Jan 23 19:52 result.tar.gz
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user      9219 Jan 23 19:52 runtime_log.err
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user       646 Jan 23 19:52 EnsNDmGKS28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwXvKDmyGZStn.diag
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user     21940 Jan 23 19:52 stderr.txt
[2026-01-23 19:52:40] HITS file was successfully produced:
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user 350592003 Jan 23 19:51 shared/HITS.pool.root.1
[2026-01-23 19:52:40]  *** Contents of shared directory: ***
[2026-01-23 19:52:40] total 750100
[2026-01-23 19:52:40] -rw-r--r-- 2 mf493845 unix-user 414352345 Jan 23 17:33 ATLAS.root_0
[2026-01-23 19:52:40] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 23 17:33 start_atlas.sh
[2026-01-23 19:52:40] -rw-r--r-- 2 mf493845 unix-user    597964 Jan 23 17:33 input.tar.gz
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user 350592003 Jan 23 19:51 HITS.pool.root.1
[2026-01-23 19:52:40] -rw------- 1 mf493845 unix-user   2539520 Jan 23 19:52 result.tar.gz
19:52:42 (748): run_atlas exited; CPU time 55045.214976
19:52:42 (748): called boinc_finish(0)

</stderr_txt>
]]>

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