Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:08:06 (1323726): wrapper (7.7.26015): starting
00:08:06 (1323726): wrapper: running run_atlas (--nthreads 2)
[2026-01-24 00:08:06] Arguments: --nthreads 2
[2026-01-24 00:08:06] Threads: 2
[2026-01-24 00:08:06] Checking for CVMFS
[2026-01-24 00:08:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 00:08:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 00:08:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 00:08:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 00:08:06] 2.9.2.0 878484 4385 60452 155452 0 49 20183329 36864000 0 130560 0 1304920 99.982 118582 13249 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-24 00:08:06] CVMFS is ok
[2026-01-24 00:08:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-24 00:08:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-24 00:08:06] Further information can be found at the LHC@home message board.
[2026-01-24 00:08:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 00:08:06] Checking for apptainer binary...
[2026-01-24 00:08:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 00:08:06] Running /usr/bin/apptainer --version
[2026-01-24 00:08:06] apptainer version 1.4.1-1.1
[2026-01-24 00:08:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 00:08:07] madmaxA277a
[2026-01-24 00:08:07] apptainer works
[2026-01-24 00:08:07] Set ATHENA_PROC_NUMBER=2
[2026-01-24 00:08:07] Set ATHENA_CORE_NUMBER=2
[2026-01-24 00:08:07] Starting ATLAS job with PandaID=6978166889
[2026-01-24 00:08:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 02:00:42]  *** The last 200 lines of the pilot log: ***
[2026-01-24 02:00:42] 2026-01-24 00:59:57,451 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-24 02:00:42] 2026-01-24 00:59:57,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-24 02:00:42] 2026-01-24 00:59:57,452 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-24 02:00:42] 2026-01-24 00:59:57,452 | INFO     | job 6978166889 has completed (purged errors)
[2026-01-24 02:00:42] 2026-01-24 00:59:57,452 | INFO     | overall cleanup function is called
[2026-01-24 02:00:42] 2026-01-24 00:59:58,458 | INFO     | --- collectZombieJob: --- 10, [1332156]
[2026-01-24 02:00:42] 2026-01-24 00:59:58,458 | INFO     | zombie collector waiting for pid 1332156
[2026-01-24 02:00:42] 2026-01-24 00:59:58,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-24 02:00:42] 2026-01-24 00:59:58,459 | INFO     | collected zombie processes
[2026-01-24 02:00:42] 2026-01-24 00:59:58,459 | INFO     | will attempt to kill all subprocesses of pid=1332156
[2026-01-24 02:00:42] 2026-01-24 00:59:58,489 | INFO     | process IDs to be killed: [1332156] (in reverse order)
[2026-01-24 02:00:42] 2026-01-24 00:59:58,509 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 02:00:42] 2026-01-24 00:59:58,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 02:00:42] 2026-01-24 00:59:58,510 | INFO     | did not find any defunct processes belonging to 1332156
[2026-01-24 02:00:42] 2026-01-24 00:59:58,510 | INFO     | did not find any defunct processes belonging to 1332156
[2026-01-24 02:00:42] 2026-01-24 00:59:58,510 | INFO     | ready for new job
[2026-01-24 02:00:42] 2026-01-24 00:59:58,510 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 02:00:42] 2026-01-24 00:59:58,511 | INFO     | **************************************
[2026-01-24 02:00:42] 2026-01-24 00:59:58,511 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 02:00:42] 2026-01-24 00:59:58,511 | INFO     | **************************************
[2026-01-24 02:00:42] 2026-01-24 00:59:58,511 | INFO     | 
[2026-01-24 02:00:42] 2026-01-24 00:59:58,511 | INFO     | architecture information:
[2026-01-24 02:00:42] 2026-01-24 00:59:58,511 | INFO     | executing command: cat /etc/os-release
[2026-01-24 02:00:42] 2026-01-24 00:59:58,519 | INFO     | cat /etc/os-release:
[2026-01-24 02:00:42] NAME="CentOS Linux"
[2026-01-24 02:00:42] VERSION="7 (Core)"
[2026-01-24 02:00:42] ID="centos"
[2026-01-24 02:00:42] ID_LIKE="rhel fedora"
[2026-01-24 02:00:42] VERSION_ID="7"
[2026-01-24 02:00:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 02:00:42] ANSI_COLOR="0;31"
[2026-01-24 02:00:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 02:00:42] HOME_URL="https://www.centos.org/"
[2026-01-24 02:00:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 02:00:42] 
[2026-01-24 02:00:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 02:00:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 02:00:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 02:00:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 02:00:42] 
[2026-01-24 02:00:42] 2026-01-24 00:59:58,519 | INFO     | **************************************
[2026-01-24 02:00:42] 2026-01-24 00:59:59,022 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-24 02:00:42] 2026-01-24 00:59:59,033 | INFO     | sufficient remaining disk space (497088987136 B)
[2026-01-24 02:00:42] 2026-01-24 00:59:59,033 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 02:00:42] 2026-01-24 00:59:59,033 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 02:00:42] 2026-01-24 00:59:59,033 | INFO     | update_server=False
[2026-01-24 02:00:42] 2026-01-24 00:59:59,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 02:00:42] 2026-01-24 00:59:59,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 02:00:42] 2026-01-24 00:59:59,135 | INFO     | all data control threads have been joined
[2026-01-24 02:00:42] 2026-01-24 00:59:59,438 | INFO     | all job control threads have been joined
[2026-01-24 02:00:42] 2026-01-24 00:59:59,642 | INFO     | all payload control threads have been joined
[2026-01-24 02:00:42] 2026-01-24 00:59:59,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 02:00:42] 2026-01-24 00:59:59,990 | INFO     | aborting loop
[2026-01-24 02:00:42] 2026-01-24 01:00:00,038 | INFO     | [job] queue monitor thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:00,039 | INFO     | [job] retrieve thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:00,141 | INFO     | [data] control thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:00,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 02:00:42] 2026-01-24 01:00:00,403 | INFO     | [payload] validate_post thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:00,445 | INFO     | [job] control thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:00,648 | INFO     | [payload] control thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:00,995 | INFO     | [job] job monitor thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:01,032 | INFO     | [job] validate thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:01,117 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:01,244 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:01,272 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 02:00:42] 2026-01-24 01:00:01,288 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:01,377 | INFO     | [data] copytool_in thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:01,391 | INFO     | [payload] failed_post thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:02,187 | INFO     | [data] copytool_out thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:05,279 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:09,091 | INFO     | job.realtimelogging is not enabled
[2026-01-24 02:00:42] 2026-01-24 01:00:10,097 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 02:00:42] 2026-01-24 01:00:29,376 | INFO     | PID=1327748 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-24 02:00:42] 2026-01-24 01:00:29,376 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 02:00:42] 2026-01-24 01:00:29,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 02:00:42] 2026-01-24 01:00:29,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 02:00:42] 2026-01-24 01:00:35,715 | INFO     | [monitor] cgroup control has ended
[2026-01-24 02:00:42] 2026-01-24 01:00:37,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839351990080)>', '<ExcThread(monitor, started 139838867093248)>']
[2026-01-24 02:00:42] 2026-01-24 01:00:37,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 02:00:42] 2026-01-24 01:00:37,420 | INFO     | [monitor] control thread has ended
[2026-01-24 02:00:42] 2026-01-24 01:00:42,377 | INFO     | all workflow threads have been joined
[2026-01-24 02:00:42] 2026-01-24 01:00:42,377 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 02:00:42] 2026-01-24 01:00:42,377 | INFO     | traces error code: 0
[2026-01-24 02:00:42] 2026-01-24 01:00:42,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 02:00:42] 2026-01-24 01:00:42,419 [wrapper] ==== pilot stdout END ====
[2026-01-24 02:00:42] 2026-01-24 01:00:42,422 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 02:00:42] 2026-01-24 01:00:42,424 [wrapper] pilotpid: 1327748
[2026-01-24 02:00:42] 2026-01-24 01:00:42,426 [wrapper] Pilot exit status: 0
[2026-01-24 02:00:42] 2026-01-24 01:00:42,431 [wrapper] pandaids: 6978166889
[2026-01-24 02:00:42] 2026-01-24 01:00:42,444 [wrapper] cleanup supervisor_pilot 1337251 1327749
[2026-01-24 02:00:42] 2026-01-24 01:00:42,446 [wrapper] Test setup, not cleaning
[2026-01-24 02:00:42] 2026-01-24 01:00:42,448 [wrapper] apfmon messages muted
[2026-01-24 02:00:42] 2026-01-24 01:00:42,450 [wrapper] ==== wrapper stdout END ====
[2026-01-24 02:00:42] 2026-01-24 01:00:42,452 [wrapper] ==== wrapper stderr END ====
[2026-01-24 02:00:42]  *** Error codes and diagnostics ***
[2026-01-24 02:00:42]     "exeErrorCode": 0,
[2026-01-24 02:00:42]     "exeErrorDiag": "",
[2026-01-24 02:00:42]     "pilotErrorCode": 0,
[2026-01-24 02:00:42]     "pilotErrorDiag": "",
[2026-01-24 02:00:42]  *** Listing of results directory ***
[2026-01-24 02:00:42] total 667900
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc    584422 Jan 23 06:20 pilot3.tar.gz
[2026-01-24 02:00:42] -rwx------ 1 boinc boinc     36322 Jan 23 06:21 runpilot2-wrapper.sh
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc      5111 Jan 23 06:22 queuedata.json
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc       100 Jan 24 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 02:00:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 24 00:08 run_atlas
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc       105 Jan 24 00:08 job.xml
[2026-01-24 02:00:42] -rw-r--r-- 2 boinc boinc 495954609 Jan 24 00:08 EVNT.48310665._000076.pool.root.1
[2026-01-24 02:00:42] -rw-r--r-- 2 boinc boinc    597752 Jan 24 00:08 input.tar.gz
[2026-01-24 02:00:42] -rw-r--r-- 2 boinc boinc     15845 Jan 24 00:08 start_atlas.sh
[2026-01-24 02:00:42] drwxrwx--x 2 boinc boinc      4096 Jan 24 00:08 shared
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc         0 Jan 24 00:08 boinc_setup_complete
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc      6210 Jan 24 00:08 init_data.xml
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc         0 Jan 24 00:08 boinc_lockfile
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc      2524 Jan 24 00:08 pandaJob.out
[2026-01-24 02:00:42] -rw------- 1 boinc boinc   1004238 Jan 24 00:08 agis_schedconf.cvmfs.json
[2026-01-24 02:00:42] -rw------- 1 boinc boinc   1516246 Jan 24 00:08 agis_ddmendpoints.agis.ALL.json
[2026-01-24 02:00:42] -rw------- 1 boinc boinc       424 Jan 24 00:08 workernode_map.json
[2026-01-24 02:00:42] drwx------ 5 boinc boinc      4096 Jan 24 00:08 pilot3
[2026-01-24 02:00:42] -rw------- 1 boinc boinc 181504541 Jan 24 01:59 HITS.48310670._003800.pool.root.1
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc       530 Jan 24 01:59 boinc_task_state.xml
[2026-01-24 02:00:42] -rw------- 1 boinc boinc      1019 Jan 24 01:59 memory_monitor_summary.json
[2026-01-24 02:00:42] -rw------- 1 boinc boinc        95 Jan 24 01:59 pilot_heartbeat.json
[2026-01-24 02:00:42] -rw------- 1 boinc boinc    304621 Jan 24 01:59 log.48310670._003800.job.log.tgz.1
[2026-01-24 02:00:42] -rw------- 1 boinc boinc      6310 Jan 24 01:59 heartbeat.json
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc      8192 Jan 24 02:00 boinc_mmap_file
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc        27 Jan 24 02:00 wrapper_checkpoint.txt
[2026-01-24 02:00:42] -rw------- 1 boinc boinc      4820 Jan 24 02:00 pilotlog.txt
[2026-01-24 02:00:42] -rw------- 1 boinc boinc    966270 Jan 24 02:00 log.48310670._003800.job.log.1
[2026-01-24 02:00:42] -rw------- 1 boinc boinc       357 Jan 24 02:00 output.list
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc       620 Jan 24 02:00 runtime_log
[2026-01-24 02:00:42] -rw------- 1 boinc boinc   1290240 Jan 24 02:00 result.tar.gz
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc      8921 Jan 24 02:00 runtime_log.err
[2026-01-24 02:00:42] -rw------- 1 boinc boinc       662 Jan 24 02:00 5m9KDmDnO38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmPvKDmgEvNfn.diag
[2026-01-24 02:00:42] -rw-r--r-- 1 boinc boinc     11206 Jan 24 02:00 stderr.txt
[2026-01-24 02:00:42] HITS file was successfully produced:
[2026-01-24 02:00:42] -rw------- 1 boinc boinc 181504541 Jan 24 01:59 shared/HITS.pool.root.1
[2026-01-24 02:00:42]  *** Contents of shared directory: ***
[2026-01-24 02:00:42] total 663452
[2026-01-24 02:00:42] -rw-r--r-- 2 boinc boinc 495954609 Jan 24 00:08 ATLAS.root_0
[2026-01-24 02:00:42] -rw-r--r-- 2 boinc boinc    597752 Jan 24 00:08 input.tar.gz
[2026-01-24 02:00:42] -rw-r--r-- 2 boinc boinc     15845 Jan 24 00:08 start_atlas.sh
[2026-01-24 02:00:42] -rw------- 1 boinc boinc 181504541 Jan 24 01:59 HITS.pool.root.1
[2026-01-24 02:00:42] -rw------- 1 boinc boinc   1290240 Jan 24 02:00 result.tar.gz
02:01:04 (1323726): run_atlas exited; CPU time 12976.439918
02:01:04 (1323726): called boinc_finish(0)

</stderr_txt>
]]>

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