Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:28:12 (3247666): wrapper (7.7.26015): starting
06:28:12 (3247666): wrapper: running run_atlas (--nthreads 12)
[2026-01-23 06:28:12] Arguments: --nthreads 12
[2026-01-23 06:28:12] Threads: 12
[2026-01-23 06:28:12] Checking for CVMFS
[2026-01-23 06:28:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 06:28:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 06:28:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 06:28:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 06:28:15] 2.11.5.0 3857663 76846 213208 155437 2 523 37224660 45568000 19931 130560 0 333236512 99.765 232603439 19090 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2026-01-23 06:28:15] CVMFS is ok
[2026-01-23 06:28:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 06:28:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 06:28:15] Further information can be found at the LHC@home message board.
[2026-01-23 06:28:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 06:28:15] Checking for apptainer binary...
[2026-01-23 06:28:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 06:28:15] Running /usr/bin/apptainer --version
[2026-01-23 06:28:15] apptainer version 1.4.1-1.el9
[2026-01-23 06:28:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 06:28:16] wns0075.triumf.lcg
[2026-01-23 06:28:16] apptainer works
[2026-01-23 06:28:16] Set ATHENA_PROC_NUMBER=12
[2026-01-23 06:28:16] Set ATHENA_CORE_NUMBER=12
[2026-01-23 06:28:17] Starting ATLAS job with PandaID=6978386706
[2026-01-23 06:28:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 06:35:54]  *** The last 200 lines of the pilot log: ***
[2026-01-23 06:35:54] 2026-01-23 14:34:43,564 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 06:35:54] 2026-01-23 14:34:43,564 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 06:35:54] 2026-01-23 14:34:43,582 | WARNING  | wrong length of table data, x=[1769178678.0, 1769178739.0], y=[3203.0, 603815.0] (must be same and length>=4)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | could have reported an average CPU frequency of 1239 MHz (4 samples)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | ..............................
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . Timing measurements:
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . get job = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . initial setup = 40 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . payload setup = 44 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . stage-in = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . payload execution = 120 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . stage-out = 1 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . log creation = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | ..............................
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-23 06:35:54] 2026-01-23 14:34:43,585 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6978386706/pilotlog.txt
[2026-01-23 06:35:54] 2026-01-23 14:34:43,645 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-23 06:35:54] - Log from pilotlog.txt -
[2026-01-23 06:35:54] 2026-01-23 14:34:43,561 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6978386706/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,562 | INFO     | extracted standard info from prmon json
[2026-01-23 06:35:54] 2026-01-23 14:34:43,563 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 06:35:54] 2026-01-23 14:34:43,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 06:35:54] 2026-01-23 14:34:43,564 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 06:35:54] 2026-01-23 14:34:43,564 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 06:35:54] 2026-01-23 14:34:43,582 | WARNING  | wrong length of table data, x=[1769178678.0, 1769178739.0], y=[3203.0, 603815.0] (must be same and length>=4)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | could have reported an average CPU frequency of 1239 MHz (4 samples)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | ..............................
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . Timing measurements:
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . get job = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . initial setup = 40 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . payload setup = 44 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . stage-in = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . payload execution = 120 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . stage-out = 1 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . log creation = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | ..............................
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-23 06:35:54] 2026-01-23 14:34:43,585 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6978386706/pilotlog.txt
[2026-01-23 06:35:54] 2026-01-23 14:34:43,646 | WARNING  | 
[2026-01-23 06:35:54] [begin log extracts]
[2026-01-23 06:35:54] - Log from pilotlog.txt -
[2026-01-23 06:35:54] 2026-01-23 14:34:43,561 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6978386706/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,562 | INFO     | extracted standard info from prmon json
[2026-01-23 06:35:54] 2026-01-23 14:34:43,563 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 06:35:54] 2026-01-23 14:34:43,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 06:35:54] 2026-01-23 14:34:43,564 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 06:35:54] 2026-01-23 14:34:43,564 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 06:35:54] 2026-01-23 14:34:43,582 | WARNING  | wrong length of table data, x=[1769178678.0, 1769178739.0], y=[3203.0, 603815.0] (must be same and length>=4)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | could have reported an average CPU frequency of 1239 MHz (4 samples)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | ..............................
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . Timing measurements:
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . get job = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . initial setup = 40 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,583 | INFO     | . payload setup = 44 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . stage-in = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . payload execution = 120 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . stage-out = 1 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | . log creation = 0 s
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | ..............................
[2026-01-23 06:35:54] 2026-01-23 14:34:43,584 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-23 06:35:54] 2026-01-23 14:34:43,585 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6978386706/pilotlog.txt
[2026-01-23 06:35:54] [end log extracts]
[2026-01-23 06:35:54] 2026-01-23 14:34:43,646 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-01-23 06:35:54] 2026-01-23 14:34:43,647 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-23 06:35:54] 2026-01-23 14:34:44,119 | INFO     | 
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | job summary report
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | --------------------------------------------------
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | PanDA job id: 6978386706
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | task id: 48310826
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-23 06:32:26,512 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | pilot state: failed 
[2026-01-23 06:35:54] 2026-01-23 14:34:44,120 | INFO     | transexitcode: 65
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | exeerrorcode: 65
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | exitcode: 65
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | cpuconsumptiontime: 27 s
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | nevents: 0
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | neventsw: 0
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | pid: 3260911
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | pgrp: 3260911
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | corecount: 12
[2026-01-23 06:35:54] 2026-01-23 14:34:44,121 | INFO     | event service: False
[2026-01-23 06:35:54] 2026-01-23 14:34:44,122 | INFO     | sizes: {0: 2283805, 1: 2284266, 2: 2284266, 169: 2307487, 170: 2307463, 174: 2311783, 176: 2311939, 294: 2312133}
[2026-01-23 06:35:54] 2026-01-23 14:34:44,122 | INFO     | --------------------------------------------------
[2026-01-23 06:35:54] 2026-01-23 14:34:44,122 | INFO     | 
[2026-01-23 06:35:54] 2026-01-23 14:34:44,122 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-23 06:35:54] 2026-01-23 14:34:44,173 | INFO     | time since job start (297s) is within the limit (349056.0s)
[2026-01-23 06:35:54] 2026-01-23 14:34:44,181 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,182 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,182 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,182 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,182 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,182 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,182 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,183 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,184 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,184 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 06:35:54] 2026-01-23 14:34:44,184 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,184 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 06:35:54] 2026-01-23 14:34:44,184 | INFO     | job 6978386706 has completed (purged errors)
[2026-01-23 06:35:54] 2026-01-23 14:34:44,184 | INFO     | overall cleanup function is called
[2026-01-23 06:35:54] 2026-01-23 14:34:45,192 | INFO     | --- collectZombieJob: --- 10, [3260911]
[2026-01-23 06:35:54] 2026-01-23 14:34:45,192 | INFO     | zombie collector waiting for pid 3260911
[2026-01-23 06:35:54] 2026-01-23 14:34:45,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 06:35:54] 2026-01-23 14:34:45,193 | INFO     | collected zombie processes
[2026-01-23 06:35:54] 2026-01-23 14:34:45,193 | INFO     | will attempt to kill all subprocesses of pid=3260911
[2026-01-23 06:35:54] 2026-01-23 14:34:46,368 | INFO     | process IDs to be killed: [3260911] (in reverse order)
[2026-01-23 06:35:54] 2026-01-23 14:34:46,960 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 06:35:54] 2026-01-23 14:34:46,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 06:35:54] 2026-01-23 14:34:47,020 | INFO     | did not find any defunct processes belonging to 3260911
[2026-01-23 06:35:54] 2026-01-23 14:34:47,046 | INFO     | did not find any defunct processes belonging to 3260911
[2026-01-23 06:35:54] 2026-01-23 14:34:47,047 | INFO     | ready for new job
[2026-01-23 06:35:54] 2026-01-23 14:34:47,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 06:35:54] 2026-01-23 14:34:47,061 | INFO     | **************************************
[2026-01-23 06:35:54] 2026-01-23 14:34:47,071 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 06:35:54] 2026-01-23 14:34:47,071 | INFO     | **************************************
[2026-01-23 06:35:54] 2026-01-23 14:34:47,072 | INFO     | 
[2026-01-23 06:35:54] 2026-01-23 14:34:47,092 | INFO     | architecture information:
[2026-01-23 06:35:54] 2026-01-23 14:34:47,104 | INFO     | executing command: cat /etc/os-release
[2026-01-23 06:35:54] 2026-01-23 14:34:47,159 | INFO     | cat /etc/os-release:
[2026-01-23 06:35:54] NAME="CentOS Linux"
[2026-01-23 06:35:54] VERSION="7 (Core)"
[2026-01-23 06:35:54] ID="centos"
[2026-01-23 06:35:54] ID_LIKE="rhel fedora"
[2026-01-23 06:35:54] VERSION_ID="7"
[2026-01-23 06:35:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 06:35:54] ANSI_COLOR="0;31"
[2026-01-23 06:35:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 06:35:54] HOME_URL="https://www.centos.org/"
[2026-01-23 06:35:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 06:35:54] 
[2026-01-23 06:35:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 06:35:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 06:35:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 06:35:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 06:35:54] 
[2026-01-23 06:35:54] 2026-01-23 14:34:47,160 | INFO     | **************************************
[2026-01-23 06:35:54] 2026-01-23 14:34:47,664 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-23 06:35:54] 2026-01-23 14:34:47,793 | INFO     | sufficient remaining disk space (1887241764864 B)
[2026-01-23 06:35:54] 2026-01-23 14:34:47,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 06:35:54] 2026-01-23 14:34:47,794 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 06:35:54] 2026-01-23 14:34:47,794 | INFO     | update_server=False
[2026-01-23 06:35:54] 2026-01-23 14:34:47,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 06:35:54] 2026-01-23 14:34:47,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 06:35:54] 2026-01-23 14:34:47,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 06:35:54] 2026-01-23 14:34:47,812 | INFO     | aborting loop
[2026-01-23 06:35:54] 2026-01-23 14:34:47,961 | INFO     | all data control threads have been joined
[2026-01-23 06:35:54] 2026-01-23 14:34:48,652 | INFO     | all payload control threads have been joined
[2026-01-23 06:35:54] 2026-01-23 14:34:48,805 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 06:35:54] 2026-01-23 14:34:48,817 | INFO     | [job] retrieve thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:48,818 | INFO     | [job] job monitor thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:48,909 | INFO     | [job] validate thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:48,973 | INFO     | [data] control thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:48,983 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:48,987 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,169 | INFO     | all job control threads have been joined
[2026-01-23 06:35:54] 2026-01-23 14:34:49,449 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,522 | INFO     | [data] copytool_in thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 06:35:54] 2026-01-23 14:34:49,657 | INFO     | [payload] control thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,811 | INFO     | [job] queue monitor thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,818 | INFO     | [data] copytool_out thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,906 | INFO     | [payload] validate_post thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,938 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:49,966 | INFO     | [payload] failed_post thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:50,174 | INFO     | [job] control thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:34:53,617 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 06:35:54] 2026-01-23 14:35:18,822 | INFO     | PID=3251457 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-23 06:35:54] 2026-01-23 14:35:18,823 | INFO     | .. there are 27 such processes running
[2026-01-23 06:35:54] 2026-01-23 14:35:18,827 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 06:35:54] 2026-01-23 14:35:18,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 06:35:54] 2026-01-23 14:35:18,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 06:35:54] 2026-01-23 14:35:46,627 | INFO     | [monitor] cgroup control has ended
[2026-01-23 06:35:54] 2026-01-23 14:35:48,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981071509312)>', '<ExcThread(monitor, started 139980676515584)>']
[2026-01-23 06:35:54] 2026-01-23 14:35:49,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 06:35:54] 2026-01-23 14:35:49,018 | INFO     | [monitor] control thread has ended
[2026-01-23 06:35:54] 2026-01-23 14:35:53,244 | INFO     | all workflow threads have been joined
[2026-01-23 06:35:54] 2026-01-23 14:35:53,244 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 06:35:54] 2026-01-23 14:35:53,245 | INFO     | traces error code: 0
[2026-01-23 06:35:54] 2026-01-23 14:35:53,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 06:35:54] 2026-01-23 14:35:53,948 [wrapper] ==== pilot stdout END ====
[2026-01-23 06:35:54] 2026-01-23 14:35:53,952 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 06:35:54] 2026-01-23 14:35:53,956 [wrapper] pilotpid: 3251457
[2026-01-23 06:35:54] 2026-01-23 14:35:53,960 [wrapper] Pilot exit status: 0
[2026-01-23 06:35:54] 2026-01-23 14:35:53,980 [wrapper] pandaids: 6978386706
[2026-01-23 06:35:54] 2026-01-23 14:35:54,069 [wrapper] cleanup supervisor_pilot 3251463 3251458
[2026-01-23 06:35:54] 2026-01-23 14:35:54,074 [wrapper] Test setup, not cleaning
[2026-01-23 06:35:54] 2026-01-23 14:35:54,078 [wrapper] apfmon messages muted
[2026-01-23 06:35:54] 2026-01-23 14:35:54,082 [wrapper] ==== wrapper stdout END ====
[2026-01-23 06:35:54] 2026-01-23 14:35:54,085 [wrapper] ==== wrapper stderr END ====
[2026-01-23 06:35:54]  *** Error codes and diagnostics ***
[2026-01-23 06:35:54]     "exeErrorCode": 65,
[2026-01-23 06:35:54]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-01-23 06:35:54]     "pilotErrorCode": 1305,
[2026-01-23 06:35:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-01-23 06:35:54]  *** Listing of results directory ***
[2026-01-23 06:35:54] total 491732
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc    584422 Jan 23 01:46 pilot3.tar.gz
[2026-01-23 06:35:54] -rwx------. 1 boinc boinc     36322 Jan 23 01:47 runpilot2-wrapper.sh
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc      5111 Jan 23 01:48 queuedata.json
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc       100 Jan 23 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 06:35:54] -rwxr-xr-x. 1 boinc boinc      7986 Jan 23 06:28 run_atlas
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc       105 Jan 23 06:28 job.xml
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc      6594 Jan 23 06:28 init_data.xml
[2026-01-23 06:35:54] -rw-r--r--. 2 boinc boinc 499361309 Jan 23 06:28 EVNT.48310824._000030.pool.root.1
[2026-01-23 06:35:54] -rw-r--r--. 2 boinc boinc    597751 Jan 23 06:28 input.tar.gz
[2026-01-23 06:35:54] -rw-r--r--. 2 boinc boinc     15845 Jan 23 06:28 start_atlas.sh
[2026-01-23 06:35:54] drwxrwx--x. 2 boinc boinc      4096 Jan 23 06:28 shared
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc         0 Jan 23 06:28 boinc_lockfile
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc      2524 Jan 23 06:28 pandaJob.out
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc   1004230 Jan 23 06:29 agis_schedconf.cvmfs.json
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc   1516246 Jan 23 06:29 agis_ddmendpoints.agis.ALL.json
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc       445 Jan 23 06:29 workernode_map.json
[2026-01-23 06:35:54] drwx------. 5 boinc boinc      4096 Jan 23 06:29 pilot3
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc       526 Jan 23 06:32 boinc_task_state.xml
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc       987 Jan 23 06:32 memory_monitor_summary.json
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc     22775 Jan 23 06:32 log.48310826._001272.job.log.tgz.1
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc      7023 Jan 23 06:34 heartbeat.json
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc        95 Jan 23 06:35 pilot_heartbeat.json
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc        23 Jan 23 06:35 wrapper_checkpoint.txt
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc      4819 Jan 23 06:35 pilotlog.txt
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc     96211 Jan 23 06:35 log.48310826._001272.job.log.1
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc      8192 Jan 23 06:35 boinc_mmap_file
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc       188 Jan 23 06:35 output.list
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc       620 Jan 23 06:35 runtime_log
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc    133120 Jan 23 06:35 result.tar.gz
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc      8635 Jan 23 06:35 runtime_log.err
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc       643 Jan 23 06:35 lm8LDm2vS38n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2mvKDm3Dm6gn.diag
[2026-01-23 06:35:54] -rw-r--r--. 1 boinc boinc     21890 Jan 23 06:35 stderr.txt
[2026-01-23 06:35:54] No HITS result produced
[2026-01-23 06:35:54]  *** Contents of shared directory: ***
[2026-01-23 06:35:54] total 488396
[2026-01-23 06:35:54] -rw-r--r--. 2 boinc boinc 499361309 Jan 23 06:28 ATLAS.root_0
[2026-01-23 06:35:54] -rw-r--r--. 2 boinc boinc    597751 Jan 23 06:28 input.tar.gz
[2026-01-23 06:35:54] -rw-r--r--. 2 boinc boinc     15845 Jan 23 06:28 start_atlas.sh
[2026-01-23 06:35:54] -rw-------. 1 boinc boinc    133120 Jan 23 06:35 result.tar.gz
06:35:55 (3247666): run_atlas exited; CPU time 39.635191
06:35:55 (3247666): called boinc_finish(0)

</stderr_txt>
]]>

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