Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:46:46 (3444682): wrapper (7.7.26015): starting
04:46:46 (3444682): wrapper: running run_atlas (--nthreads 4)
[2026-01-24 04:46:46] Arguments: --nthreads 4
[2026-01-24 04:46:46] Threads: 4
[2026-01-24 04:46:46] Checking for CVMFS
[2026-01-24 04:46:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 04:46:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 04:46:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 04:46:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 04:46:46] 2.9.2.0 2561037 4812 96760 155458 3 50 23211776 36864001 0 130560 0 2392194 99.989 129577 10130 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-24 04:46:46] CVMFS is ok
[2026-01-24 04:46:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-24 04:46:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-24 04:46:46] Further information can be found at the LHC@home message board.
[2026-01-24 04:46:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 04:46:46] Checking for apptainer binary...
[2026-01-24 04:46:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 04:46:46] Running /usr/bin/apptainer --version
[2026-01-24 04:46:46] apptainer version 1.4.1-1.1
[2026-01-24 04:46:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 04:46:47] atlasA139
[2026-01-24 04:46:47] apptainer works
[2026-01-24 04:46:47] Set ATHENA_PROC_NUMBER=4
[2026-01-24 04:46:47] Set ATHENA_CORE_NUMBER=4
[2026-01-24 04:46:47] Starting ATLAS job with PandaID=6978070019
[2026-01-24 04:46:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 05:53:27]  *** The last 200 lines of the pilot log: ***
[2026-01-24 05:53:27]  guid=886f33f1-c2cd-4b72-b403-f72f3c20578d
[2026-01-24 05:53:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-24 05:53:27]  is_altstaged=None
[2026-01-24 05:53:27]  is_tar=False
[2026-01-24 05:53:27]  lfn=log.48310670._001961.job.log.tgz.1
[2026-01-24 05:53:27]  mtime=0
[2026-01-24 05:53:27]  protocol_id=None
[2026-01-24 05:53:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-24 05:53:27]  replicas=None
[2026-01-24 05:53:27]  scope=mc23_13p6TeV
[2026-01-24 05:53:27]  status=None
[2026-01-24 05:53:27]  status_code=0
[2026-01-24 05:53:27]  storage_token=
[2026-01-24 05:53:27]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6978070019/log.48310670._001961.job.log.tgz.1
[2026-01-24 05:53:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/30/log.48310670._001961.job.log.tgz.1
[2026-01-24 05:53:27]  workdir=None
[2026-01-24 05:53:27] ]
[2026-01-24 05:53:27] 2026-01-24 04:52:52,631 | INFO     | transferring file log.48310670._001961.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6978070019/log.48310670._001961.job.log.tgz.1 to /local/data/boinc/
[2026-01-24 05:53:27] 2026-01-24 04:52:52,632 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6978070019/log.48310670._001961.job.log.tgz.1 /local/data/boinc/slots/0/log.48310670._0019
[2026-01-24 05:53:27] 2026-01-24 04:52:52,651 | INFO     | adding to output.list: log.48310670._001961.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/30/log.48310670._001961.job.log.tg
[2026-01-24 05:53:27] 2026-01-24 04:52:52,651 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-24 05:53:27] 2026-01-24 04:52:52,651 | INFO     | summary of transferred files:
[2026-01-24 05:53:27] 2026-01-24 04:52:52,651 | INFO     |  -- lfn=log.48310670._001961.job.log.tgz.1, status_code=0, status=transferred
[2026-01-24 05:53:27] 2026-01-24 04:52:52,652 | INFO     | stage-out finished correctly
[2026-01-24 05:53:27] 2026-01-24 04:52:54,363 | INFO     | time since job start (3955s) is within the limit (349056.0s)
[2026-01-24 05:53:27] 2026-01-24 04:52:54,717 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-24 05:53:27] 2026-01-24 04:52:54,757 | INFO     | job 6978070019 has state=finished
[2026-01-24 05:53:27] 2026-01-24 04:52:54,757 | INFO     | preparing for final server update for job 6978070019 in state='finished'
[2026-01-24 05:53:27] 2026-01-24 04:52:54,757 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-6978070019/jobReport.json
[2026-01-24 05:53:27] 2026-01-24 04:52:54,758 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-01-24 05:53:27] 2026-01-24 04:52:54,758 | INFO     | this job has now completed (state=finished)
[2026-01-24 05:53:27] 2026-01-24 04:52:54,758 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-24 05:53:27] 2026-01-24 04:52:54,759 | INFO     | log transfer has been attempted: DONE
[2026-01-24 05:53:27] 2026-01-24 04:52:54,759 | INFO     | job 6978070019 has finished - writing final server update
[2026-01-24 05:53:27] 2026-01-24 04:52:54,759 | INFO     | total number of processed events: 400 (read)
[2026-01-24 05:53:27] 2026-01-24 04:52:54,760 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6978070019/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 05:53:27] 2026-01-24 04:52:54,760 | INFO     | extracted standard info from prmon json
[2026-01-24 05:53:27] 2026-01-24 04:52:54,760 | INFO     | extracted standard memory fields from prmon json
[2026-01-24 05:53:27] 2026-01-24 04:52:54,761 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-24 05:53:27] 2026-01-24 04:52:54,761 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-24 05:53:27] 2026-01-24 04:52:54,761 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-24 05:53:27] 2026-01-24 04:52:54,761 | INFO     | fitting pss+swap vs Time
[2026-01-24 05:53:27] 2026-01-24 04:52:54,761 | INFO     | sum of square deviations: 60482994.5
[2026-01-24 05:53:27] 2026-01-24 04:52:54,761 | INFO     | sum of deviations: -9486020665.5
[2026-01-24 05:53:27] 2026-01-24 04:52:54,761 | INFO     | mean x: 1769228481.5
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | mean y: 2535193.327586207
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | intersect: 277484463398.78674
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | chi2: 0.10830310749116909
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | current memory leak: -156.84 B/s (using 58 data points, chi2=0.11)
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | could have reported an average CPU frequency of 3374 MHz (6 samples)
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | ..............................
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . Timing measurements:
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . get job = 0 s
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . initial setup = 4 s
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . payload setup = 4 s
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . stage-in = 0 s
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . payload execution = 3934 s
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . stage-out = 0 s
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | . log creation = 0 s
[2026-01-24 05:53:27] 2026-01-24 04:52:54,762 | INFO     | ..............................
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | 
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | job summary report
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | --------------------------------------------------
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | PanDA job id: 6978070019
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | task id: 48310670
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | errors: (none)
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | pilot state: finished 
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | transexitcode: 0
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | exeerrorcode: 0
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | exeerrordiag: 
[2026-01-24 05:53:27] 2026-01-24 04:52:55,117 | INFO     | exitcode: 0
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | exitmsg: OK
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | cpuconsumptiontime: 14848 s
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | nevents: 400
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | neventsw: 0
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | pid: 3453306
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | pgrp: 3453306
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | corecount: 4
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | event service: False
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | sizes: {0: 2284243, 11: 2284243, 3942: 2319221, 3944: 2319415}
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | --------------------------------------------------
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | 
[2026-01-24 05:53:27] 2026-01-24 04:52:55,118 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,139 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-24 05:53:27] 2026-01-24 04:52:55,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,139 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-24 05:53:27] 2026-01-24 04:52:55,139 | INFO     | job 6978070019 has completed (purged errors)
[2026-01-24 05:53:27] 2026-01-24 04:52:55,139 | INFO     | overall cleanup function is called
[2026-01-24 05:53:27] 2026-01-24 04:52:56,142 | INFO     | --- collectZombieJob: --- 10, [3453306]
[2026-01-24 05:53:27] 2026-01-24 04:52:56,142 | INFO     | zombie collector waiting for pid 3453306
[2026-01-24 05:53:27] 2026-01-24 04:52:56,142 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-24 05:53:27] 2026-01-24 04:52:56,142 | INFO     | collected zombie processes
[2026-01-24 05:53:27] 2026-01-24 04:52:56,142 | INFO     | will attempt to kill all subprocesses of pid=3453306
[2026-01-24 05:53:27] 2026-01-24 04:52:56,193 | INFO     | process IDs to be killed: [3453306] (in reverse order)
[2026-01-24 05:53:27] 2026-01-24 04:52:56,229 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 05:53:27] 2026-01-24 04:52:56,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 05:53:27] 2026-01-24 04:52:56,231 | INFO     | did not find any defunct processes belonging to 3453306
[2026-01-24 05:53:27] 2026-01-24 04:52:56,233 | INFO     | did not find any defunct processes belonging to 3453306
[2026-01-24 05:53:27] 2026-01-24 04:52:56,233 | INFO     | ready for new job
[2026-01-24 05:53:27] 2026-01-24 04:52:56,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 05:53:27] 2026-01-24 04:52:56,234 | INFO     | **************************************
[2026-01-24 05:53:27] 2026-01-24 04:52:56,234 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 05:53:27] 2026-01-24 04:52:56,234 | INFO     | **************************************
[2026-01-24 05:53:27] 2026-01-24 04:52:56,234 | INFO     | 
[2026-01-24 05:53:27] 2026-01-24 04:52:56,234 | INFO     | architecture information:
[2026-01-24 05:53:27] 2026-01-24 04:52:56,234 | INFO     | executing command: cat /etc/os-release
[2026-01-24 05:53:27] 2026-01-24 04:52:56,248 | INFO     | cat /etc/os-release:
[2026-01-24 05:53:27] NAME="CentOS Linux"
[2026-01-24 05:53:27] VERSION="7 (Core)"
[2026-01-24 05:53:27] ID="centos"
[2026-01-24 05:53:27] ID_LIKE="rhel fedora"
[2026-01-24 05:53:27] VERSION_ID="7"
[2026-01-24 05:53:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 05:53:27] ANSI_COLOR="0;31"
[2026-01-24 05:53:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 05:53:27] HOME_URL="https://www.centos.org/"
[2026-01-24 05:53:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 05:53:27] 
[2026-01-24 05:53:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 05:53:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 05:53:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 05:53:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 05:53:27] 
[2026-01-24 05:53:27] 2026-01-24 04:52:56,249 | INFO     | **************************************
[2026-01-24 05:53:27] 2026-01-24 04:52:56,752 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-24 05:53:27] 2026-01-24 04:52:56,769 | INFO     | sufficient remaining disk space (333102186496 B)
[2026-01-24 05:53:27] 2026-01-24 04:52:56,769 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 05:53:27] 2026-01-24 04:52:56,769 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 05:53:27] 2026-01-24 04:52:56,769 | INFO     | update_server=False
[2026-01-24 05:53:27] 2026-01-24 04:52:56,769 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 05:53:27] 2026-01-24 04:52:56,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 05:53:27] 2026-01-24 04:52:56,769 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 05:53:27] 2026-01-24 04:52:57,447 | INFO     | all data control threads have been joined
[2026-01-24 05:53:27] 2026-01-24 04:52:57,712 | WARNING  | process 3453306 can no longer be monitored (due to stat problems) - aborting
[2026-01-24 05:53:27] 2026-01-24 04:52:57,750 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 05:53:27] 2026-01-24 04:52:57,774 | INFO     | [job] queue monitor thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:57,774 | INFO     | [job] retrieve thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:57,783 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:57,799 | INFO     | number of running child processes to parent process 3453306: 1
[2026-01-24 05:53:27] 2026-01-24 04:52:57,799 | INFO     | maximum number of monitored processes: 6
[2026-01-24 05:53:27] 2026-01-24 04:52:57,799 | INFO     | aborting job monitoring since job object (job id=6978070019) has expired
[2026-01-24 05:53:27] 2026-01-24 04:52:57,799 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 05:53:27] 2026-01-24 04:52:57,799 | INFO     | will abort loop
[2026-01-24 05:53:27] 2026-01-24 04:52:57,926 | INFO     | [data] copytool_in thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:58,003 | INFO     | all job control threads have been joined
[2026-01-24 05:53:27] 2026-01-24 04:52:58,100 | INFO     | [payload] validate_post thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:58,182 | INFO     | all payload control threads have been joined
[2026-01-24 05:53:27] 2026-01-24 04:52:58,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 05:53:27] 2026-01-24 04:52:58,453 | INFO     | [data] control thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:58,805 | INFO     | [job] job monitor thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:58,843 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:59,009 | INFO     | [job] control thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:59,086 | INFO     | [payload] failed_post thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:59,158 | INFO     | [job] validate thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:59,187 | INFO     | [payload] control thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:52:59,218 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:53:00,199 | INFO     | [data] copytool_out thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:53:00,775 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:53:03,445 | INFO     | [monitor] cgroup control has ended
[2026-01-24 05:53:27] 2026-01-24 04:53:07,183 | INFO     | job.realtimelogging is not enabled
[2026-01-24 05:53:27] 2026-01-24 04:53:08,188 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 05:53:27] 2026-01-24 04:53:09,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634201417536)>', '<ExcThread(monitor, started 139633228748544)>']
[2026-01-24 05:53:27] 2026-01-24 04:53:14,220 | INFO     | all workflow threads have been joined
[2026-01-24 05:53:27] 2026-01-24 04:53:14,220 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 05:53:27] 2026-01-24 04:53:14,220 | INFO     | traces error code: 0
[2026-01-24 05:53:27] 2026-01-24 04:53:14,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 05:53:27] 2026-01-24 04:53:27,524 | INFO     | PID=3448796 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-24 05:53:27] 2026-01-24 04:53:27,525 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 05:53:27] 2026-01-24 04:53:27,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 05:53:27] 2026-01-24 04:53:27,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 05:53:27] 2026-01-24 04:53:27,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 05:53:27] 2026-01-24 04:53:27,525 | INFO     | [monitor] control thread has ended
[2026-01-24 05:53:27] 2026-01-24 04:53:27,595 [wrapper] ==== pilot stdout END ====
[2026-01-24 05:53:27] 2026-01-24 04:53:27,599 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 05:53:27] 2026-01-24 04:53:27,602 [wrapper] pilotpid: 3448796
[2026-01-24 05:53:27] 2026-01-24 04:53:27,607 [wrapper] Pilot exit status: 0
[2026-01-24 05:53:27] 2026-01-24 04:53:27,618 [wrapper] pandaids: 6978070019
[2026-01-24 05:53:27] 2026-01-24 04:53:27,640 [wrapper] cleanup supervisor_pilot 3458938 3448797
[2026-01-24 05:53:27] 2026-01-24 04:53:27,644 [wrapper] Test setup, not cleaning
[2026-01-24 05:53:27] 2026-01-24 04:53:27,648 [wrapper] apfmon messages muted
[2026-01-24 05:53:27] 2026-01-24 04:53:27,651 [wrapper] ==== wrapper stdout END ====
[2026-01-24 05:53:27] 2026-01-24 04:53:27,655 [wrapper] ==== wrapper stderr END ====
[2026-01-24 05:53:27]  *** Error codes and diagnostics ***
[2026-01-24 05:53:27]     "exeErrorCode": 0,
[2026-01-24 05:53:27]     "exeErrorDiag": "",
[2026-01-24 05:53:27]     "pilotErrorCode": 0,
[2026-01-24 05:53:27]     "pilotErrorDiag": "",
[2026-01-24 05:53:27]  *** Listing of results directory ***
[2026-01-24 05:53:27] total 662392
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc    584422 Jan 23 01:32 pilot3.tar.gz
[2026-01-24 05:53:27] -rwx------ 1 boinc boinc     36322 Jan 23 01:33 runpilot2-wrapper.sh
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc      5111 Jan 23 01:37 queuedata.json
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc       100 Jan 24 04:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 05:53:27] -rwxr-xr-x 1 boinc boinc      7986 Jan 24 04:46 run_atlas
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc       105 Jan 24 04:46 job.xml
[2026-01-24 05:53:27] -rw-r--r-- 2 boinc boinc 491984374 Jan 24 04:46 EVNT.48310665._000040.pool.root.1
[2026-01-24 05:53:27] -rw-r--r-- 2 boinc boinc    597752 Jan 24 04:46 input.tar.gz
[2026-01-24 05:53:27] -rw-r--r-- 2 boinc boinc     15845 Jan 24 04:46 start_atlas.sh
[2026-01-24 05:53:27] drwxrwx--x 2 boinc boinc      4096 Jan 24 04:46 shared
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc         0 Jan 24 04:46 boinc_setup_complete
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc      6372 Jan 24 04:46 init_data.xml
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc         0 Jan 24 04:46 boinc_lockfile
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc      2523 Jan 24 04:46 pandaJob.out
[2026-01-24 05:53:27] -rw------- 1 boinc boinc   1004230 Jan 24 04:46 agis_schedconf.cvmfs.json
[2026-01-24 05:53:27] -rw------- 1 boinc boinc   1516246 Jan 24 04:46 agis_ddmendpoints.agis.ALL.json
[2026-01-24 05:53:27] -rw------- 1 boinc boinc       424 Jan 24 04:46 workernode_map.json
[2026-01-24 05:53:27] drwx------ 5 boinc boinc      4096 Jan 24 04:46 pilot3
[2026-01-24 05:53:27] -rw------- 1 boinc boinc 180681639 Jan 24 05:52 HITS.48310670._001961.pool.root.1
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc       530 Jan 24 05:52 boinc_task_state.xml
[2026-01-24 05:53:27] -rw------- 1 boinc boinc      1017 Jan 24 05:52 memory_monitor_summary.json
[2026-01-24 05:53:27] -rw------- 1 boinc boinc    251551 Jan 24 05:52 log.48310670._001961.job.log.tgz.1
[2026-01-24 05:53:27] -rw------- 1 boinc boinc      6314 Jan 24 05:52 heartbeat.json
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc        27 Jan 24 05:53 wrapper_checkpoint.txt
[2026-01-24 05:53:27] -rw------- 1 boinc boinc       747 Jan 24 05:53 pilotlog.txt
[2026-01-24 05:53:27] -rw------- 1 boinc boinc        95 Jan 24 05:53 pilot_heartbeat.json
[2026-01-24 05:53:27] -rw------- 1 boinc boinc    590807 Jan 24 05:53 log.48310670._001961.job.log.1
[2026-01-24 05:53:27] -rw------- 1 boinc boinc       357 Jan 24 05:53 output.list
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc       620 Jan 24 05:53 runtime_log
[2026-01-24 05:53:27] -rw------- 1 boinc boinc    860160 Jan 24 05:53 result.tar.gz
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc      8911 Jan 24 05:53 runtime_log.err
[2026-01-24 05:53:27] -rw------- 1 boinc boinc       660 Jan 24 05:53 QALODm8HK38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmt6uKDm5VrR1m.diag
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc      8192 Jan 24 05:53 boinc_mmap_file
[2026-01-24 05:53:27] -rw-r--r-- 1 boinc boinc     21353 Jan 24 05:53 stderr.txt
[2026-01-24 05:53:27] HITS file was successfully produced:
[2026-01-24 05:53:27] -rw------- 1 boinc boinc 180681639 Jan 24 05:52 shared/HITS.pool.root.1
[2026-01-24 05:53:27]  *** Contents of shared directory: ***
[2026-01-24 05:53:27] total 658352
[2026-01-24 05:53:27] -rw-r--r-- 2 boinc boinc 491984374 Jan 24 04:46 ATLAS.root_0
[2026-01-24 05:53:27] -rw-r--r-- 2 boinc boinc    597752 Jan 24 04:46 input.tar.gz
[2026-01-24 05:53:27] -rw-r--r-- 2 boinc boinc     15845 Jan 24 04:46 start_atlas.sh
[2026-01-24 05:53:27] -rw------- 1 boinc boinc 180681639 Jan 24 05:52 HITS.pool.root.1
[2026-01-24 05:53:27] -rw------- 1 boinc boinc    860160 Jan 24 05:53 result.tar.gz
05:53:49 (3444682): run_atlas exited; CPU time 14868.784584
05:53:49 (3444682): called boinc_finish(0)

</stderr_txt>
]]>

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