Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:10:22 (1282696): wrapper (7.7.26015): starting
18:10:22 (1282696): wrapper: running run_atlas (--nthreads 2)
[2026-01-23 18:10:22] Arguments: --nthreads 2
[2026-01-23 18:10:22] Threads: 2
[2026-01-23 18:10:22] Checking for CVMFS
[2026-01-23 18:10:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 18:10:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 18:10:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 18:10:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 18:10:22] 2.9.2.0 878484 4027 59552 155443 1 49 20133286 36864001 0 130560 0 1183408 99.983 104851 12676 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-23 18:10:22] CVMFS is ok
[2026-01-23 18:10:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 18:10:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 18:10:22] Further information can be found at the LHC@home message board.
[2026-01-23 18:10:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 18:10:22] Checking for apptainer binary...
[2026-01-23 18:10:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 18:10:22] Running /usr/bin/apptainer --version
[2026-01-23 18:10:22] apptainer version 1.4.1-1.1
[2026-01-23 18:10:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 18:10:22] madmaxA277a
[2026-01-23 18:10:22] apptainer works
[2026-01-23 18:10:23] Set ATHENA_PROC_NUMBER=2
[2026-01-23 18:10:23] Set ATHENA_CORE_NUMBER=2
[2026-01-23 18:10:23] Starting ATLAS job with PandaID=6978166764
[2026-01-23 18:10:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 20:09:59]  *** The last 200 lines of the pilot log: ***
[2026-01-23 20:09:59] 2026-01-23 19:09:12,410 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,411 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,411 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,411 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,413 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 20:09:59] 2026-01-23 19:09:12,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,414 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 20:09:59] 2026-01-23 19:09:12,414 | INFO     | job 6978166764 has completed (purged errors)
[2026-01-23 20:09:59] 2026-01-23 19:09:12,414 | INFO     | overall cleanup function is called
[2026-01-23 20:09:59] 2026-01-23 19:09:13,423 | INFO     | --- collectZombieJob: --- 10, [1291126]
[2026-01-23 20:09:59] 2026-01-23 19:09:13,423 | INFO     | zombie collector waiting for pid 1291126
[2026-01-23 20:09:59] 2026-01-23 19:09:13,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 20:09:59] 2026-01-23 19:09:13,424 | INFO     | collected zombie processes
[2026-01-23 20:09:59] 2026-01-23 19:09:13,424 | INFO     | will attempt to kill all subprocesses of pid=1291126
[2026-01-23 20:09:59] 2026-01-23 19:09:13,455 | INFO     | process IDs to be killed: [1291126] (in reverse order)
[2026-01-23 20:09:59] 2026-01-23 19:09:13,476 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 20:09:59] 2026-01-23 19:09:13,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 20:09:59] 2026-01-23 19:09:13,477 | INFO     | did not find any defunct processes belonging to 1291126
[2026-01-23 20:09:59] 2026-01-23 19:09:13,477 | INFO     | did not find any defunct processes belonging to 1291126
[2026-01-23 20:09:59] 2026-01-23 19:09:13,477 | INFO     | ready for new job
[2026-01-23 20:09:59] 2026-01-23 19:09:13,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 20:09:59] 2026-01-23 19:09:13,478 | INFO     | **************************************
[2026-01-23 20:09:59] 2026-01-23 19:09:13,478 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 20:09:59] 2026-01-23 19:09:13,478 | INFO     | **************************************
[2026-01-23 20:09:59] 2026-01-23 19:09:13,478 | INFO     | 
[2026-01-23 20:09:59] 2026-01-23 19:09:13,478 | INFO     | architecture information:
[2026-01-23 20:09:59] 2026-01-23 19:09:13,478 | INFO     | executing command: cat /etc/os-release
[2026-01-23 20:09:59] 2026-01-23 19:09:13,487 | INFO     | cat /etc/os-release:
[2026-01-23 20:09:59] NAME="CentOS Linux"
[2026-01-23 20:09:59] VERSION="7 (Core)"
[2026-01-23 20:09:59] ID="centos"
[2026-01-23 20:09:59] ID_LIKE="rhel fedora"
[2026-01-23 20:09:59] VERSION_ID="7"
[2026-01-23 20:09:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 20:09:59] ANSI_COLOR="0;31"
[2026-01-23 20:09:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 20:09:59] HOME_URL="https://www.centos.org/"
[2026-01-23 20:09:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 20:09:59] 
[2026-01-23 20:09:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 20:09:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 20:09:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 20:09:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 20:09:59] 
[2026-01-23 20:09:59] 2026-01-23 19:09:13,487 | INFO     | **************************************
[2026-01-23 20:09:59] 2026-01-23 19:09:13,990 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 20:09:59] 2026-01-23 19:09:13,999 | INFO     | sufficient remaining disk space (497592303616 B)
[2026-01-23 20:09:59] 2026-01-23 19:09:13,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 20:09:59] 2026-01-23 19:09:13,999 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 20:09:59] 2026-01-23 19:09:13,999 | INFO     | update_server=False
[2026-01-23 20:09:59] 2026-01-23 19:09:14,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 20:09:59] 2026-01-23 19:09:14,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 20:09:59] 2026-01-23 19:09:14,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 20:09:59] 2026-01-23 19:09:14,028 | INFO     | all data control threads have been joined
[2026-01-23 20:09:59] 2026-01-23 19:09:14,130 | INFO     | all payload control threads have been joined
[2026-01-23 20:09:59] 2026-01-23 19:09:14,823 | INFO     | all job control threads have been joined
[2026-01-23 20:09:59] 2026-01-23 19:09:15,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 20:09:59] 2026-01-23 19:09:15,003 | INFO     | aborting loop
[2026-01-23 20:09:59] 2026-01-23 19:09:15,003 | INFO     | [job] queue monitor thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,004 | INFO     | [job] retrieve thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,016 | INFO     | [payload] validate_post thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,020 | INFO     | [data] copytool_in thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,034 | INFO     | [data] control thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,063 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,131 | INFO     | [payload] control thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,660 | INFO     | [payload] failed_post thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:15,830 | INFO     | [job] control thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:16,006 | INFO     | [data] copytool_out thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:16,008 | INFO     | [job] job monitor thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:16,092 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:16,207 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:16,347 | INFO     | [job] validate thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:17,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 20:09:59] 2026-01-23 19:09:21,294 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:24,338 | INFO     | job.realtimelogging is not enabled
[2026-01-23 20:09:59] 2026-01-23 19:09:25,344 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 20:09:59] 2026-01-23 19:09:45,016 | INFO     | PID=1286719 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-23 20:09:59] 2026-01-23 19:09:45,016 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 20:09:59] 2026-01-23 19:09:45,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 20:09:59] 2026-01-23 19:09:45,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 20:09:59] 2026-01-23 19:09:52,842 | INFO     | [monitor] cgroup control has ended
[2026-01-23 20:09:59] 2026-01-23 19:09:53,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139988166051648)>', '<ExcThread(monitor, started 139987504834304)>']
[2026-01-23 20:09:59] 2026-01-23 19:09:54,064 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 20:09:59] 2026-01-23 19:09:54,064 | INFO     | [monitor] control thread has ended
[2026-01-23 20:09:59] 2026-01-23 19:09:58,874 | INFO     | all workflow threads have been joined
[2026-01-23 20:09:59] 2026-01-23 19:09:58,875 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 20:09:59] 2026-01-23 19:09:58,876 | INFO     | traces error code: 0
[2026-01-23 20:09:59] 2026-01-23 19:09:58,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 20:09:59] 2026-01-23 19:09:58,919 [wrapper] ==== pilot stdout END ====
[2026-01-23 20:09:59] 2026-01-23 19:09:58,921 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 20:09:59] 2026-01-23 19:09:58,923 [wrapper] pilotpid: 1286719
[2026-01-23 20:09:59] 2026-01-23 19:09:58,925 [wrapper] Pilot exit status: 0
[2026-01-23 20:09:59] 2026-01-23 19:09:58,930 [wrapper] pandaids: 6978166764
[2026-01-23 20:09:59] 2026-01-23 19:09:58,942 [wrapper] cleanup supervisor_pilot 1296448 1286720
[2026-01-23 20:09:59] 2026-01-23 19:09:58,944 [wrapper] Test setup, not cleaning
[2026-01-23 20:09:59] 2026-01-23 19:09:58,946 [wrapper] apfmon messages muted
[2026-01-23 20:09:59] 2026-01-23 19:09:58,948 [wrapper] ==== wrapper stdout END ====
[2026-01-23 20:09:59] 2026-01-23 19:09:58,949 [wrapper] ==== wrapper stderr END ====
[2026-01-23 20:09:59]  *** Error codes and diagnostics ***
[2026-01-23 20:09:59]     "exeErrorCode": 0,
[2026-01-23 20:09:59]     "exeErrorDiag": "",
[2026-01-23 20:09:59]     "pilotErrorCode": 0,
[2026-01-23 20:09:59]     "pilotErrorDiag": "",
[2026-01-23 20:09:59]  *** Listing of results directory ***
[2026-01-23 20:09:59] total 672212
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc    584422 Jan 23 06:20 pilot3.tar.gz
[2026-01-23 20:09:59] -rwx------ 1 boinc boinc     36322 Jan 23 06:21 runpilot2-wrapper.sh
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc      5111 Jan 23 06:22 queuedata.json
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc       100 Jan 23 18:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 20:09:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 18:10 run_atlas
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc       105 Jan 23 18:10 job.xml
[2026-01-23 20:09:59] -rw-r--r-- 2 boinc boinc 496102415 Jan 23 18:10 EVNT.48310665._000074.pool.root.1
[2026-01-23 20:09:59] -rw-r--r-- 2 boinc boinc    597755 Jan 23 18:10 input.tar.gz
[2026-01-23 20:09:59] -rw-r--r-- 2 boinc boinc     15845 Jan 23 18:10 start_atlas.sh
[2026-01-23 20:09:59] drwxrwx--x 2 boinc boinc      4096 Jan 23 18:10 shared
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc         0 Jan 23 18:10 boinc_setup_complete
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc      6210 Jan 23 18:10 init_data.xml
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc         0 Jan 23 18:10 boinc_lockfile
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc      2523 Jan 23 18:10 pandaJob.out
[2026-01-23 20:09:59] -rw------- 1 boinc boinc   1004246 Jan 23 18:10 agis_schedconf.cvmfs.json
[2026-01-23 20:09:59] -rw------- 1 boinc boinc   1516246 Jan 23 18:10 agis_ddmendpoints.agis.ALL.json
[2026-01-23 20:09:59] -rw------- 1 boinc boinc       431 Jan 23 18:10 workernode_map.json
[2026-01-23 20:09:59] drwx------ 5 boinc boinc      4096 Jan 23 18:10 pilot3
[2026-01-23 20:09:59] -rw------- 1 boinc boinc 185699290 Jan 23 20:08 HITS.48310670._003675.pool.root.1
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc       530 Jan 23 20:08 boinc_task_state.xml
[2026-01-23 20:09:59] -rw------- 1 boinc boinc      1029 Jan 23 20:09 memory_monitor_summary.json
[2026-01-23 20:09:59] -rw------- 1 boinc boinc    284045 Jan 23 20:09 log.48310670._003675.job.log.tgz.1
[2026-01-23 20:09:59] -rw------- 1 boinc boinc        95 Jan 23 20:09 pilot_heartbeat.json
[2026-01-23 20:09:59] -rw------- 1 boinc boinc      6311 Jan 23 20:09 heartbeat.json
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc      8192 Jan 23 20:09 boinc_mmap_file
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc        27 Jan 23 20:09 wrapper_checkpoint.txt
[2026-01-23 20:09:59] -rw------- 1 boinc boinc      4820 Jan 23 20:09 pilotlog.txt
[2026-01-23 20:09:59] -rw------- 1 boinc boinc   1022256 Jan 23 20:09 log.48310670._003675.job.log.1
[2026-01-23 20:09:59] -rw------- 1 boinc boinc       357 Jan 23 20:09 output.list
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc       620 Jan 23 20:09 runtime_log
[2026-01-23 20:09:59] -rw------- 1 boinc boinc   1320960 Jan 23 20:09 result.tar.gz
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc      8921 Jan 23 20:09 runtime_log.err
[2026-01-23 20:09:59] -rw------- 1 boinc boinc       662 Jan 23 20:09 eCELDm0mO38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme21KDmV8YFPm.diag
[2026-01-23 20:09:59] -rw-r--r-- 1 boinc boinc     12926 Jan 23 20:09 stderr.txt
[2026-01-23 20:09:59] HITS file was successfully produced:
[2026-01-23 20:09:59] -rw------- 1 boinc boinc 185699290 Jan 23 20:08 shared/HITS.pool.root.1
[2026-01-23 20:09:59]  *** Contents of shared directory: ***
[2026-01-23 20:09:59] total 667724
[2026-01-23 20:09:59] -rw-r--r-- 2 boinc boinc 496102415 Jan 23 18:10 ATLAS.root_0
[2026-01-23 20:09:59] -rw-r--r-- 2 boinc boinc    597755 Jan 23 18:10 input.tar.gz
[2026-01-23 20:09:59] -rw-r--r-- 2 boinc boinc     15845 Jan 23 18:10 start_atlas.sh
[2026-01-23 20:09:59] -rw------- 1 boinc boinc 185699290 Jan 23 20:08 HITS.pool.root.1
[2026-01-23 20:09:59] -rw------- 1 boinc boinc   1320960 Jan 23 20:09 result.tar.gz
20:10:00 (1282696): run_atlas exited; CPU time 13793.176452
20:10:00 (1282696): called boinc_finish(0)

</stderr_txt>
]]>

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