Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:34:42 (14617): wrapper (7.7.26015): starting
09:34:42 (14617): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 09:34:42] Arguments: --nthreads 4
[2026-01-28 09:34:42] Threads: 4
[2026-01-28 09:34:42] Checking for CVMFS
[2026-01-28 09:34:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 09:34:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 09:34:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 09:34:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 09:34:42] 2.9.2.0 3081 13 49268 155617 2 186 30605478 36864000 828 130560 0 33031 99.938 3044 2125 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 09:34:42] CVMFS is ok
[2026-01-28 09:34:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 09:34:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 09:34:42] Further information can be found at the LHC@home message board.
[2026-01-28 09:34:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 09:34:42] Checking for apptainer binary...
[2026-01-28 09:34:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 09:34:42] Running /usr/bin/apptainer --version
[2026-01-28 09:34:42] apptainer version 1.4.1-1.1
[2026-01-28 09:34:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 09:34:42] thA373a
[2026-01-28 09:34:42] apptainer works
[2026-01-28 09:34:42] Set ATHENA_PROC_NUMBER=4
[2026-01-28 09:34:42] Set ATHENA_CORE_NUMBER=4
[2026-01-28 09:34:42] Starting ATLAS job with PandaID=6978136078
[2026-01-28 09:34:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:04:01 (2931): wrapper (7.7.26015): starting
10:04:01 (2931): wrapper: running run_atlas (--nthreads 4)
[2026-01-28 10:04:01] Arguments: --nthreads 4
[2026-01-28 10:04:01] Threads: 4
[2026-01-28 10:04:01] This job has been restarted, cleaning up previous attempt
[2026-01-28 10:04:01] Checking for CVMFS
[2026-01-28 10:04:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-28 10:04:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-28 10:04:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-28 10:04:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-28 10:04:05] 2.9.2.0 3129 0 29068 155617 3 1 30605639 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-28 10:04:05] CVMFS is ok
[2026-01-28 10:04:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-28 10:04:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-28 10:04:05] Further information can be found at the LHC@home message board.
[2026-01-28 10:04:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-28 10:04:05] Checking for apptainer binary...
[2026-01-28 10:04:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-28 10:04:05] Running /usr/bin/apptainer --version
[2026-01-28 10:04:05] apptainer version 1.4.1-1.1
[2026-01-28 10:04:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-28 10:04:05] thA373a
[2026-01-28 10:04:05] apptainer works
[2026-01-28 10:04:05] Set ATHENA_PROC_NUMBER=4
[2026-01-28 10:04:05] Set ATHENA_CORE_NUMBER=4
[2026-01-28 10:04:05] Starting ATLAS job with PandaID=6978136078
[2026-01-28 10:04:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-28 11:16:26]  *** The last 200 lines of the pilot log: ***
[2026-01-28 11:16:26] 2026-01-28 10:15:36,618 | WARNING  | found no corresponding commands to process id(s)
[2026-01-28 11:16:26] 2026-01-28 10:15:36,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-28 11:16:26] 2026-01-28 10:15:36,619 | INFO     | did not find any defunct processes belonging to 9725
[2026-01-28 11:16:26] 2026-01-28 10:15:36,621 | INFO     | did not find any defunct processes belonging to 9725
[2026-01-28 11:16:26] 2026-01-28 10:15:36,621 | INFO     | ready for new job
[2026-01-28 11:16:26] 2026-01-28 10:15:36,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-28 11:16:26] 2026-01-28 10:15:36,621 | INFO     | **************************************
[2026-01-28 11:16:26] 2026-01-28 10:15:36,621 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-28 11:16:26] 2026-01-28 10:15:36,621 | INFO     | **************************************
[2026-01-28 11:16:26] 2026-01-28 10:15:36,621 | INFO     | 
[2026-01-28 11:16:26] 2026-01-28 10:15:36,622 | INFO     | architecture information:
[2026-01-28 11:16:26] 2026-01-28 10:15:36,622 | INFO     | executing command: cat /etc/os-release
[2026-01-28 11:16:26] 2026-01-28 10:15:36,635 | INFO     | cat /etc/os-release:
[2026-01-28 11:16:26] NAME="CentOS Linux"
[2026-01-28 11:16:26] VERSION="7 (Core)"
[2026-01-28 11:16:26] ID="centos"
[2026-01-28 11:16:26] ID_LIKE="rhel fedora"
[2026-01-28 11:16:26] VERSION_ID="7"
[2026-01-28 11:16:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-28 11:16:26] ANSI_COLOR="0;31"
[2026-01-28 11:16:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-28 11:16:26] HOME_URL="https://www.centos.org/"
[2026-01-28 11:16:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-28 11:16:26] 
[2026-01-28 11:16:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-28 11:16:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-28 11:16:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-28 11:16:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-28 11:16:26] 
[2026-01-28 11:16:26] 2026-01-28 10:15:36,635 | INFO     | **************************************
[2026-01-28 11:16:26] 2026-01-28 10:15:37,139 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | INFO     | sufficient remaining disk space (326831702016 B)
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | INFO     | current server update state: UPDATING_FINAL
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | INFO     | update_server=False
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | INFO     | will abort loop
[2026-01-28 11:16:26] 2026-01-28 10:15:37,156 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-28 11:16:26] 2026-01-28 10:15:37,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-28 11:16:26] 2026-01-28 10:15:37,281 | INFO     | all job control threads have been joined
[2026-01-28 11:16:26] 2026-01-28 10:15:37,865 | INFO     | all data control threads have been joined
[2026-01-28 11:16:26] 2026-01-28 10:15:38,063 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-28 11:16:26] 2026-01-28 10:15:38,162 | INFO     | [job] retrieve thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:38,162 | INFO     | [job] job monitor thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:38,162 | INFO     | [job] queue monitor thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:38,287 | INFO     | [job] control thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:38,492 | INFO     | all payload control threads have been joined
[2026-01-28 11:16:26] 2026-01-28 10:15:38,871 | INFO     | [data] control thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,150 | INFO     | [payload] execute_payloads thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,180 | INFO     | [job] validate thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,309 | INFO     | [job] create_data_payload thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,350 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,385 | INFO     | [payload] validate_pre thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,498 | INFO     | [payload] control thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,551 | INFO     | [data] copytool_in thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,587 | INFO     | [payload] validate_post thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:39,749 | INFO     | [payload] failed_post thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:40,070 | INFO     | [data] copytool_out thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:15:41,164 | INFO     | [data] queue_monitor thread has finished
[2026-01-28 11:16:26] 2026-01-28 10:16:07,402 | INFO     | PID=7279 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-28 11:16:26] 2026-01-28 10:16:07,403 | INFO     | found 0 job(s) in 20 queues
[2026-01-28 11:16:26] 2026-01-28 10:16:07,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-28 11:16:26] 2026-01-28 10:16:07,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-28 11:16:26] 2026-01-28 10:16:20,663 | INFO     | [monitor] cgroup control has ended
[2026-01-28 11:16:26] 2026-01-28 10:16:21,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407268288320)>', '<ExcThread(monitor, started 140406507435776)>']
[2026-01-28 11:16:26] 2026-01-28 10:16:22,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-28 11:16:26] 2026-01-28 10:16:22,484 | INFO     | [monitor] control thread has ended
[2026-01-28 11:16:26] 2026-01-28 10:16:26,694 | INFO     | all workflow threads have been joined
[2026-01-28 11:16:26] 2026-01-28 10:16:26,695 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-28 11:16:26] 2026-01-28 10:16:26,695 | INFO     | traces error code: 0
[2026-01-28 11:16:26] 2026-01-28 10:16:26,695 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-28 11:16:26] 2026-01-28 10:16:26,844 [wrapper] ==== pilot stdout END ====
[2026-01-28 11:16:26] 2026-01-28 10:16:26,847 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-28 11:16:26] 2026-01-28 10:16:26,851 [wrapper] pilotpid: 7279
[2026-01-28 11:16:26] 2026-01-28 10:16:26,855 [wrapper] Pilot exit status: 0
[2026-01-28 11:16:26] 2026-01-28 10:16:26,868 [wrapper] pandaids: 6978136078 6978136078
[2026-01-28 11:16:26] 2026-01-28 10:16:26,892 [wrapper] cleanup supervisor_pilot   14761 7280
[2026-01-28 11:16:26] 2026-01-28 10:16:26,896 [wrapper] Test setup, not cleaning
[2026-01-28 11:16:26] 2026-01-28 10:16:26,900 [wrapper] apfmon messages muted
[2026-01-28 11:16:26] 2026-01-28 10:16:26,904 [wrapper] ==== wrapper stdout END ====
[2026-01-28 11:16:26] 2026-01-28 10:16:26,908 [wrapper] ==== wrapper stderr END ====
[2026-01-28 11:16:26]  *** Error codes and diagnostics ***
[2026-01-28 11:16:26]     "exeErrorCode": 0,
[2026-01-28 11:16:26]     "exeErrorDiag": "",
[2026-01-28 11:16:26]     "pilotErrorCode": 0,
[2026-01-28 11:16:26]     "pilotErrorDiag": "",
[2026-01-28 11:16:26]  *** Listing of results directory ***
[2026-01-28 11:16:26] total 1240932
[2026-01-28 11:16:26] drwx------ 5 boinc boinc      4096 Jan 14 11:00 pilot3
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc    584422 Jan 23 04:26 pilot3.tar.gz
[2026-01-28 11:16:26] -rwx------ 1 boinc boinc     36322 Jan 23 04:26 runpilot2-wrapper.sh
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc      5111 Jan 23 04:27 queuedata.json
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc       100 Jan 28 09:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-28 11:16:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 28 09:34 run_atlas
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc       105 Jan 28 09:34 job.xml
[2026-01-28 11:16:26] -rw-r--r-- 3 boinc boinc 532651904 Jan 28 09:34 EVNT.48310779._000003.pool.root.1
[2026-01-28 11:16:26] -rw-r--r-- 3 boinc boinc 532651904 Jan 28 09:34 ATLAS.root_0
[2026-01-28 11:16:26] -rw-r--r-- 2 boinc boinc    597747 Jan 28 09:34 input.tar.gz
[2026-01-28 11:16:26] -rw-r--r-- 2 boinc boinc     15845 Jan 28 09:34 start_atlas.sh
[2026-01-28 11:16:26] drwxrwx--x 2 boinc boinc      4096 Jan 28 09:34 shared
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc         0 Jan 28 09:34 boinc_setup_complete
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc         0 Jan 28 09:34 boinc_lockfile
[2026-01-28 11:16:26] -rw------- 1 boinc boinc   1516246 Jan 28 09:34 agis_ddmendpoints.agis.ALL.json
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc      2521 Jan 28 10:04 pandaJob.out
[2026-01-28 11:16:26] -rw------- 1 boinc boinc   1004489 Jan 28 10:04 agis_schedconf.cvmfs.json
[2026-01-28 11:16:26] -rw------- 1 boinc boinc       422 Jan 28 10:04 workernode_map.json
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc      6383 Jan 28 10:35 init_data.xml
[2026-01-28 11:16:26] -rw------- 1 boinc boinc 199705377 Jan 28 11:15 HITS.48310783._000110.pool.root.1
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc       530 Jan 28 11:15 boinc_task_state.xml
[2026-01-28 11:16:26] -rw------- 1 boinc boinc      1030 Jan 28 11:15 memory_monitor_summary.json
[2026-01-28 11:16:26] -rw------- 1 boinc boinc    254918 Jan 28 11:15 log.48310783._000110.job.log.tgz.1
[2026-01-28 11:16:26] -rw------- 1 boinc boinc      6322 Jan 28 11:15 heartbeat.json
[2026-01-28 11:16:26] -rw------- 1 boinc boinc        97 Jan 28 11:16 pilot_heartbeat.json
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc      8192 Jan 28 11:16 boinc_mmap_file
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc        27 Jan 28 11:16 wrapper_checkpoint.txt
[2026-01-28 11:16:26] -rw------- 1 boinc boinc      4747 Jan 28 11:16 pilotlog.txt
[2026-01-28 11:16:26] -rw------- 1 boinc boinc    631252 Jan 28 11:16 log.48310783._000110.job.log.1
[2026-01-28 11:16:26] -rw------- 1 boinc boinc       357 Jan 28 11:16 output.list
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc       620 Jan 28 11:16 runtime_log
[2026-01-28 11:16:26] -rw------- 1 boinc boinc    901120 Jan 28 11:16 result.tar.gz
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc      8986 Jan 28 11:16 runtime_log.err
[2026-01-28 11:16:26] -rw------- 1 boinc boinc       788 Jan 28 11:16 ArQODmizM38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzBvKDmSegC1n.diag
[2026-01-28 11:16:26] -rw-r--r-- 1 boinc boinc     12056 Jan 28 11:16 stderr.txt
[2026-01-28 11:16:26] HITS file was successfully produced:
[2026-01-28 11:16:26] -rw------- 1 boinc boinc 199705377 Jan 28 11:15 shared/HITS.pool.root.1
[2026-01-28 11:16:26]  *** Contents of shared directory: ***
[2026-01-28 11:16:26] total 716684
[2026-01-28 11:16:26] -rw-r--r-- 3 boinc boinc 532651904 Jan 28 09:34 ATLAS.root_0
[2026-01-28 11:16:26] -rw-r--r-- 2 boinc boinc    597747 Jan 28 09:34 input.tar.gz
[2026-01-28 11:16:26] -rw-r--r-- 2 boinc boinc     15845 Jan 28 09:34 start_atlas.sh
[2026-01-28 11:16:26] -rw------- 1 boinc boinc 199705377 Jan 28 11:15 HITS.pool.root.1
[2026-01-28 11:16:26] -rw------- 1 boinc boinc    901120 Jan 28 11:16 result.tar.gz
11:16:48 (2931): run_atlas exited; CPU time 16096.031117
11:16:48 (2931): called boinc_finish(0)

</stderr_txt>
]]>

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