Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:17:38 (238345): wrapper (7.7.26015): starting
17:17:38 (238345): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 17:17:38] Arguments: --nthreads 4
[2026-01-23 17:17:38] Threads: 4
[2026-01-23 17:17:38] Checking for CVMFS
[2026-01-23 17:17:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 17:17:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 17:17:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 17:17:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 17:17:38] 2.9.2.0 3657875 4290 96476 155442 1 49 21573594 36864000 0 130560 0 2230729 99.990 118174 7547 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-23 17:17:38] CVMFS is ok
[2026-01-23 17:17:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 17:17:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 17:17:38] Further information can be found at the LHC@home message board.
[2026-01-23 17:17:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 17:17:38] Checking for apptainer binary...
[2026-01-23 17:17:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 17:17:38] Running /usr/bin/apptainer --version
[2026-01-23 17:17:38] apptainer version 1.4.1-1.1
[2026-01-23 17:17:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 17:17:38] magicA244a
[2026-01-23 17:17:38] apptainer works
[2026-01-23 17:17:39] Set ATHENA_PROC_NUMBER=4
[2026-01-23 17:17:39] Set ATHENA_CORE_NUMBER=4
[2026-01-23 17:17:39] Starting ATLAS job with PandaID=6978007129
[2026-01-23 17:17:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 18:16:19]  *** The last 200 lines of the pilot log: ***
[2026-01-23 18:16:19] 2026-01-23 17:15:48,035 | INFO     | overall cleanup function is called
[2026-01-23 18:16:19] 2026-01-23 17:15:49,041 | INFO     | --- collectZombieJob: --- 10, [246946]
[2026-01-23 18:16:19] 2026-01-23 17:15:49,042 | INFO     | zombie collector waiting for pid 246946
[2026-01-23 18:16:19] 2026-01-23 17:15:49,042 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 18:16:19] 2026-01-23 17:15:49,042 | INFO     | collected zombie processes
[2026-01-23 18:16:19] 2026-01-23 17:15:49,043 | INFO     | will attempt to kill all subprocesses of pid=246946
[2026-01-23 18:16:19] 2026-01-23 17:15:49,087 | INFO     | process IDs to be killed: [246946] (in reverse order)
[2026-01-23 18:16:19] 2026-01-23 17:15:49,113 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 18:16:19] 2026-01-23 17:15:49,113 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 18:16:19] 2026-01-23 17:15:49,115 | INFO     | did not find any defunct processes belonging to 246946
[2026-01-23 18:16:19] 2026-01-23 17:15:49,116 | INFO     | did not find any defunct processes belonging to 246946
[2026-01-23 18:16:19] 2026-01-23 17:15:49,116 | INFO     | ready for new job
[2026-01-23 18:16:19] 2026-01-23 17:15:49,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 18:16:19] 2026-01-23 17:15:49,116 | INFO     | **************************************
[2026-01-23 18:16:19] 2026-01-23 17:15:49,117 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 18:16:19] 2026-01-23 17:15:49,117 | INFO     | **************************************
[2026-01-23 18:16:19] 2026-01-23 17:15:49,117 | INFO     | 
[2026-01-23 18:16:19] 2026-01-23 17:15:49,117 | INFO     | architecture information:
[2026-01-23 18:16:19] 2026-01-23 17:15:49,117 | INFO     | executing command: cat /etc/os-release
[2026-01-23 18:16:19] 2026-01-23 17:15:49,127 | INFO     | cat /etc/os-release:
[2026-01-23 18:16:19] NAME="CentOS Linux"
[2026-01-23 18:16:19] VERSION="7 (Core)"
[2026-01-23 18:16:19] ID="centos"
[2026-01-23 18:16:19] ID_LIKE="rhel fedora"
[2026-01-23 18:16:19] VERSION_ID="7"
[2026-01-23 18:16:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 18:16:19] ANSI_COLOR="0;31"
[2026-01-23 18:16:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 18:16:19] HOME_URL="https://www.centos.org/"
[2026-01-23 18:16:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 18:16:19] 
[2026-01-23 18:16:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 18:16:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 18:16:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 18:16:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 18:16:19] 
[2026-01-23 18:16:19] 2026-01-23 17:15:49,127 | INFO     | **************************************
[2026-01-23 18:16:19] 2026-01-23 17:15:49,630 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 18:16:19] 2026-01-23 17:15:49,643 | INFO     | sufficient remaining disk space (334531395584 B)
[2026-01-23 18:16:19] 2026-01-23 17:15:49,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 18:16:19] 2026-01-23 17:15:49,644 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 18:16:19] 2026-01-23 17:15:49,644 | INFO     | update_server=False
[2026-01-23 18:16:19] 2026-01-23 17:15:49,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 18:16:19] 2026-01-23 17:15:49,644 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 18:16:19] 2026-01-23 17:15:49,644 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 18:16:19] 2026-01-23 17:15:50,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 18:16:19] 2026-01-23 17:15:50,311 | INFO     | all data control threads have been joined
[2026-01-23 18:16:19] 2026-01-23 17:15:50,576 | INFO     | all payload control threads have been joined
[2026-01-23 18:16:19] 2026-01-23 17:15:50,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 18:16:19] 2026-01-23 17:15:50,604 | INFO     | aborting loop
[2026-01-23 18:16:19] 2026-01-23 17:15:50,650 | INFO     | [job] queue monitor thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:50,650 | INFO     | [job] retrieve thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:50,740 | INFO     | [data] copytool_in thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:51,245 | INFO     | all job control threads have been joined
[2026-01-23 18:16:19] 2026-01-23 17:15:51,247 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:51,317 | INFO     | [data] control thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:51,582 | INFO     | [payload] control thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:51,610 | INFO     | [job] job monitor thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:51,674 | INFO     | [payload] validate_post thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:51,851 | INFO     | [payload] failed_post thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:51,975 | INFO     | [job] validate thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:52,077 | INFO     | [data] copytool_out thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:52,079 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:52,139 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:52,248 | INFO     | [job] control thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:15:53,339 | INFO     | [monitor] cgroup control has ended
[2026-01-23 18:16:19] 2026-01-23 17:15:53,651 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:16:00,103 | INFO     | job.realtimelogging is not enabled
[2026-01-23 18:16:19] 2026-01-23 17:16:01,109 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 18:16:19] 2026-01-23 17:16:02,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140303057024832)>', '<ExcThread(monitor, started 140302203475712)>']
[2026-01-23 18:16:19] 2026-01-23 17:16:07,984 | INFO     | all workflow threads have been joined
[2026-01-23 18:16:19] 2026-01-23 17:16:07,985 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 18:16:19] 2026-01-23 17:16:07,985 | INFO     | traces error code: 0
[2026-01-23 18:16:19] 2026-01-23 17:16:07,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 18:16:19] 2026-01-23 17:16:19,176 | INFO     | PID=242442 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-23 18:16:19] 2026-01-23 17:16:19,176 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 18:16:19] 2026-01-23 17:16:19,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 18:16:19] 2026-01-23 17:16:19,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 18:16:19] 2026-01-23 17:16:19,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 18:16:19] 2026-01-23 17:16:19,177 | CRITICAL | thread 'MainThread' is not alive
[2026-01-23 18:16:19] 2026-01-23 17:16:19,177 | INFO     | [monitor] control thread has ended
[2026-01-23 18:16:19] 2026-01-23 17:16:19,229 [wrapper] ==== pilot stdout END ====
[2026-01-23 18:16:19] 2026-01-23 17:16:19,232 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 18:16:19] 2026-01-23 17:16:19,234 [wrapper] pilotpid: 242442
[2026-01-23 18:16:19] 2026-01-23 17:16:19,237 [wrapper] Pilot exit status: 0
[2026-01-23 18:16:19] 2026-01-23 17:16:19,245 [wrapper] pandaids: 6978007129
[2026-01-23 18:16:19] 2026-01-23 17:16:19,262 [wrapper] cleanup supervisor_pilot  252025 242443
[2026-01-23 18:16:19] 2026-01-23 17:16:19,265 [wrapper] Test setup, not cleaning
[2026-01-23 18:16:19] 2026-01-23 17:16:19,267 [wrapper] apfmon messages muted
[2026-01-23 18:16:19] 2026-01-23 17:16:19,270 [wrapper] ==== wrapper stdout END ====
[2026-01-23 18:16:19] 2026-01-23 17:16:19,273 [wrapper] ==== wrapper stderr END ====
[2026-01-23 18:16:19]  *** Error codes and diagnostics ***
[2026-01-23 18:16:19]     "exeErrorCode": 0,
[2026-01-23 18:16:19]     "exeErrorDiag": "",
[2026-01-23 18:16:19]     "pilotErrorCode": 0,
[2026-01-23 18:16:19]     "pilotErrorDiag": "",
[2026-01-23 18:16:19]  *** Listing of results directory ***
[2026-01-23 18:16:19] total 655392
[2026-01-23 18:16:19] -rwx------ 1 boinc boinc     36322 Jan 22 23:23 runpilot2-wrapper.sh
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc    584422 Jan 22 23:25 pilot3.tar.gz
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc      5111 Jan 22 23:27 queuedata.json
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc       100 Jan 23 17:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 18:16:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 17:17 run_atlas
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc       105 Jan 23 17:17 job.xml
[2026-01-23 18:16:19] -rw-r--r-- 2 boinc boinc 489814236 Jan 23 17:17 EVNT.48310665._000005.pool.root.1
[2026-01-23 18:16:19] -rw-r--r-- 2 boinc boinc    597760 Jan 23 17:17 input.tar.gz
[2026-01-23 18:16:19] -rw-r--r-- 2 boinc boinc     15845 Jan 23 17:17 start_atlas.sh
[2026-01-23 18:16:19] drwxrwx--x 2 boinc boinc      4096 Jan 23 17:17 shared
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc         0 Jan 23 17:17 boinc_setup_complete
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc      6438 Jan 23 17:17 init_data.xml
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc         0 Jan 23 17:17 boinc_lockfile
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc      2520 Jan 23 17:17 pandaJob.out
[2026-01-23 18:16:19] -rw------- 1 boinc boinc   1004246 Jan 23 17:17 agis_schedconf.cvmfs.json
[2026-01-23 18:16:19] -rw------- 1 boinc boinc   1516246 Jan 23 17:17 agis_ddmendpoints.agis.ALL.json
[2026-01-23 18:16:19] -rw------- 1 boinc boinc       427 Jan 23 17:17 workernode_map.json
[2026-01-23 18:16:19] drwx------ 5 boinc boinc      4096 Jan 23 17:17 pilot3
[2026-01-23 18:16:19] -rw------- 1 boinc boinc 175821018 Jan 23 18:15 HITS.48310670._000120.pool.root.1
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc       530 Jan 23 18:15 boinc_task_state.xml
[2026-01-23 18:16:19] -rw------- 1 boinc boinc      1020 Jan 23 18:15 memory_monitor_summary.json
[2026-01-23 18:16:19] -rw------- 1 boinc boinc    254888 Jan 23 18:15 log.48310670._000120.job.log.tgz.1
[2026-01-23 18:16:19] -rw------- 1 boinc boinc      6299 Jan 23 18:15 heartbeat.json
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc        27 Jan 23 18:15 wrapper_checkpoint.txt
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc      8192 Jan 23 18:15 boinc_mmap_file
[2026-01-23 18:16:19] -rw------- 1 boinc boinc       816 Jan 23 18:16 pilotlog.txt
[2026-01-23 18:16:19] -rw------- 1 boinc boinc        95 Jan 23 18:16 pilot_heartbeat.json
[2026-01-23 18:16:19] -rw------- 1 boinc boinc    524106 Jan 23 18:16 log.48310670._000120.job.log.1
[2026-01-23 18:16:19] -rw------- 1 boinc boinc       357 Jan 23 18:16 output.list
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc       620 Jan 23 18:16 runtime_log
[2026-01-23 18:16:19] -rw------- 1 boinc boinc    798720 Jan 23 18:16 result.tar.gz
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc      8916 Jan 23 18:16 runtime_log.err
[2026-01-23 18:16:19] -rw------- 1 boinc boinc       661 Jan 23 18:16 3U2MDm3FI38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlpuKDmM7VR3m.diag
[2026-01-23 18:16:19] -rw-r--r-- 1 boinc boinc     10884 Jan 23 18:16 stderr.txt
[2026-01-23 18:16:19] HITS file was successfully produced:
[2026-01-23 18:16:19] -rw------- 1 boinc boinc 175821018 Jan 23 18:15 shared/HITS.pool.root.1
[2026-01-23 18:16:19]  *** Contents of shared directory: ***
[2026-01-23 18:16:19] total 651428
[2026-01-23 18:16:19] -rw-r--r-- 2 boinc boinc 489814236 Jan 23 17:17 ATLAS.root_0
[2026-01-23 18:16:19] -rw-r--r-- 2 boinc boinc    597760 Jan 23 17:17 input.tar.gz
[2026-01-23 18:16:19] -rw-r--r-- 2 boinc boinc     15845 Jan 23 17:17 start_atlas.sh
[2026-01-23 18:16:19] -rw------- 1 boinc boinc 175821018 Jan 23 18:15 HITS.pool.root.1
[2026-01-23 18:16:19] -rw------- 1 boinc boinc    798720 Jan 23 18:16 result.tar.gz
18:16:21 (238345): run_atlas exited; CPU time 12710.208712
18:16:21 (238345): called boinc_finish(0)

</stderr_txt>
]]>

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