Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:22:15 (398849): wrapper (7.7.26015): starting
12:22:15 (398849): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 12:22:15] Arguments: --nthreads 4
[2026-01-23 12:22:15] Threads: 4
[2026-01-23 12:22:15] Checking for CVMFS
[2026-01-23 12:22:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 12:22:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 12:22:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 12:22:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 12:22:16] 2.9.2.0 3052 2372 94772 155428 3 188 22186838 36864000 0 130560 0 1138131 99.991 48262 7037 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-23 12:22:16] CVMFS is ok
[2026-01-23 12:22:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 12:22:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 12:22:16] Further information can be found at the LHC@home message board.
[2026-01-23 12:22:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 12:22:16] Checking for apptainer binary...
[2026-01-23 12:22:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 12:22:16] Running /usr/bin/apptainer --version
[2026-01-23 12:22:16] apptainer version 1.4.1-1.1
[2026-01-23 12:22:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 12:22:16] thA334
[2026-01-23 12:22:16] apptainer works
[2026-01-23 12:22:16] Set ATHENA_PROC_NUMBER=4
[2026-01-23 12:22:16] Set ATHENA_CORE_NUMBER=4
[2026-01-23 12:22:16] Starting ATLAS job with PandaID=6978068141
[2026-01-23 12:22:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 13:25:38]  *** The last 200 lines of the pilot log: ***
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | job 6978068141 has completed (purged errors)
[2026-01-23 13:25:38] 2026-01-23 12:25:08,829 | INFO     | overall cleanup function is called
[2026-01-23 13:25:38] 2026-01-23 12:25:09,836 | INFO     | --- collectZombieJob: --- 10, [407471]
[2026-01-23 13:25:38] 2026-01-23 12:25:09,836 | INFO     | zombie collector waiting for pid 407471
[2026-01-23 13:25:38] 2026-01-23 12:25:09,836 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 13:25:38] 2026-01-23 12:25:09,837 | INFO     | collected zombie processes
[2026-01-23 13:25:38] 2026-01-23 12:25:09,837 | INFO     | will attempt to kill all subprocesses of pid=407471
[2026-01-23 13:25:38] 2026-01-23 12:25:09,877 | INFO     | process IDs to be killed: [407471] (in reverse order)
[2026-01-23 13:25:38] 2026-01-23 12:25:09,907 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 13:25:38] 2026-01-23 12:25:09,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 13:25:38] 2026-01-23 12:25:09,909 | INFO     | did not find any defunct processes belonging to 407471
[2026-01-23 13:25:38] 2026-01-23 12:25:09,910 | INFO     | did not find any defunct processes belonging to 407471
[2026-01-23 13:25:38] 2026-01-23 12:25:09,910 | INFO     | ready for new job
[2026-01-23 13:25:38] 2026-01-23 12:25:09,910 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 13:25:38] 2026-01-23 12:25:09,911 | INFO     | **************************************
[2026-01-23 13:25:38] 2026-01-23 12:25:09,911 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 13:25:38] 2026-01-23 12:25:09,911 | INFO     | **************************************
[2026-01-23 13:25:38] 2026-01-23 12:25:09,911 | INFO     | 
[2026-01-23 13:25:38] 2026-01-23 12:25:09,911 | INFO     | architecture information:
[2026-01-23 13:25:38] 2026-01-23 12:25:09,911 | INFO     | executing command: cat /etc/os-release
[2026-01-23 13:25:38] 2026-01-23 12:25:09,924 | INFO     | cat /etc/os-release:
[2026-01-23 13:25:38] NAME="CentOS Linux"
[2026-01-23 13:25:38] VERSION="7 (Core)"
[2026-01-23 13:25:38] ID="centos"
[2026-01-23 13:25:38] ID_LIKE="rhel fedora"
[2026-01-23 13:25:38] VERSION_ID="7"
[2026-01-23 13:25:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 13:25:38] ANSI_COLOR="0;31"
[2026-01-23 13:25:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 13:25:38] HOME_URL="https://www.centos.org/"
[2026-01-23 13:25:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 13:25:38] 
[2026-01-23 13:25:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 13:25:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 13:25:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 13:25:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 13:25:38] 
[2026-01-23 13:25:38] 2026-01-23 12:25:09,924 | INFO     | **************************************
[2026-01-23 13:25:38] 2026-01-23 12:25:10,427 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 13:25:38] 2026-01-23 12:25:10,445 | INFO     | sufficient remaining disk space (235213422592 B)
[2026-01-23 13:25:38] 2026-01-23 12:25:10,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 13:25:38] 2026-01-23 12:25:10,445 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 13:25:38] 2026-01-23 12:25:10,445 | INFO     | update_server=False
[2026-01-23 13:25:38] 2026-01-23 12:25:10,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 13:25:38] 2026-01-23 12:25:10,446 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-23 13:25:38] 2026-01-23 12:25:10,446 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 13:25:38] 2026-01-23 12:25:10,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 13:25:38] 2026-01-23 12:25:10,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 13:25:38] 2026-01-23 12:25:10,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 13:25:38] 2026-01-23 12:25:10,600 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-23 13:25:38] 2026-01-23 12:25:10,601 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-23 13:25:38] 2026-01-23 12:25:10,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 13:25:38] 2026-01-23 12:25:10,601 | INFO     | will abort loop
[2026-01-23 13:25:38] 2026-01-23 12:25:10,930 | INFO     | all payload control threads have been joined
[2026-01-23 13:25:38] 2026-01-23 12:25:11,036 | INFO     | all data control threads have been joined
[2026-01-23 13:25:38] 2026-01-23 12:25:11,451 | INFO     | [job] retrieve thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:11,463 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:11,500 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:11,540 | INFO     | all job control threads have been joined
[2026-01-23 13:25:38] 2026-01-23 12:25:11,606 | INFO     | [job] job monitor thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:11,682 | INFO     | [data] copytool_in thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:11,872 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:11,936 | INFO     | [payload] control thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:12,039 | INFO     | [data] control thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:12,362 | INFO     | [payload] failed_post thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:12,452 | INFO     | [data] copytool_out thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:12,546 | INFO     | [job] control thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:12,849 | INFO     | [payload] validate_post thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:12,871 | INFO     | [job] validate thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:13,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 13:25:38] 2026-01-23 12:25:13,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 13:25:38] 2026-01-23 12:25:14,404 | INFO     | [job] queue monitor thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:17,122 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:20,930 | INFO     | job.realtimelogging is not enabled
[2026-01-23 13:25:38] 2026-01-23 12:25:21,936 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 13:25:38] 2026-01-23 12:25:32,870 | INFO     | [monitor] cgroup control has ended
[2026-01-23 13:25:38] 2026-01-23 12:25:33,417 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107433555776)>', '<ExcThread(monitor, started 140106128160512)>']
[2026-01-23 13:25:38] 2026-01-23 12:25:33,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 13:25:38] 2026-01-23 12:25:33,564 | INFO     | [monitor] control thread has ended
[2026-01-23 13:25:38] 2026-01-23 12:25:38,442 | INFO     | all workflow threads have been joined
[2026-01-23 13:25:38] 2026-01-23 12:25:38,443 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 13:25:38] 2026-01-23 12:25:38,444 | INFO     | traces error code: 0
[2026-01-23 13:25:38] 2026-01-23 12:25:38,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 13:25:38] 2026-01-23 12:25:38,509 [wrapper] ==== pilot stdout END ====
[2026-01-23 13:25:38] 2026-01-23 12:25:38,513 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 13:25:38] 2026-01-23 12:25:38,517 [wrapper] pilotpid: 402958
[2026-01-23 13:25:38] 2026-01-23 12:25:38,520 [wrapper] Pilot exit status: 0
[2026-01-23 13:25:38] 2026-01-23 12:25:38,531 [wrapper] pandaids: 6978068141
[2026-01-23 13:25:38] 2026-01-23 12:25:38,552 [wrapper] cleanup supervisor_pilot  412498 402959
[2026-01-23 13:25:38] 2026-01-23 12:25:38,555 [wrapper] Test setup, not cleaning
[2026-01-23 13:25:38] 2026-01-23 12:25:38,558 [wrapper] apfmon messages muted
[2026-01-23 13:25:38] 2026-01-23 12:25:38,562 [wrapper] ==== wrapper stdout END ====
[2026-01-23 13:25:38] 2026-01-23 12:25:38,565 [wrapper] ==== wrapper stderr END ====
[2026-01-23 13:25:38]  *** Error codes and diagnostics ***
[2026-01-23 13:25:38]     "exeErrorCode": 0,
[2026-01-23 13:25:38]     "exeErrorDiag": "",
[2026-01-23 13:25:38]     "pilotErrorCode": 0,
[2026-01-23 13:25:38]     "pilotErrorDiag": "",
[2026-01-23 13:25:38]  *** Listing of results directory ***
[2026-01-23 13:25:38] total 668692
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc    584422 Jan 22 23:19 pilot3.tar.gz
[2026-01-23 13:25:38] -rwx------ 1 boinc boinc     36322 Jan 22 23:20 runpilot2-wrapper.sh
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc      5111 Jan 22 23:22 queuedata.json
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc       100 Jan 23 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 13:25:38] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 12:22 run_atlas
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc       105 Jan 23 12:22 job.xml
[2026-01-23 13:25:38] -rw-r--r-- 2 boinc boinc 501186162 Jan 23 12:22 EVNT.48310665._000018.pool.root.1
[2026-01-23 13:25:38] -rw-r--r-- 2 boinc boinc    597753 Jan 23 12:22 input.tar.gz
[2026-01-23 13:25:38] -rw-r--r-- 2 boinc boinc     15845 Jan 23 12:22 start_atlas.sh
[2026-01-23 13:25:38] drwxrwx--x 2 boinc boinc      4096 Jan 23 12:22 shared
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc         0 Jan 23 12:22 boinc_setup_complete
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc      6369 Jan 23 12:22 init_data.xml
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc         0 Jan 23 12:22 boinc_lockfile
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc      2521 Jan 23 12:22 pandaJob.out
[2026-01-23 13:25:38] -rw------- 1 boinc boinc   1003905 Jan 23 12:22 agis_schedconf.cvmfs.json
[2026-01-23 13:25:38] -rw------- 1 boinc boinc   1516246 Jan 23 12:22 agis_ddmendpoints.agis.ALL.json
[2026-01-23 13:25:38] -rw------- 1 boinc boinc       420 Jan 23 12:22 workernode_map.json
[2026-01-23 13:25:38] drwx------ 5 boinc boinc      4096 Jan 23 12:22 pilot3
[2026-01-23 13:25:38] -rw------- 1 boinc boinc        95 Jan 23 13:24 pilot_heartbeat.json
[2026-01-23 13:25:38] -rw------- 1 boinc boinc 177942076 Jan 23 13:24 HITS.48310670._000888.pool.root.1
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc       530 Jan 23 13:24 boinc_task_state.xml
[2026-01-23 13:25:38] -rw------- 1 boinc boinc      1033 Jan 23 13:25 memory_monitor_summary.json
[2026-01-23 13:25:38] -rw------- 1 boinc boinc    281293 Jan 23 13:25 log.48310670._000888.job.log.tgz.1
[2026-01-23 13:25:38] -rw------- 1 boinc boinc      6302 Jan 23 13:25 heartbeat.json
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc      8192 Jan 23 13:25 boinc_mmap_file
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc        27 Jan 23 13:25 wrapper_checkpoint.txt
[2026-01-23 13:25:38] -rw------- 1 boinc boinc      4810 Jan 23 13:25 pilotlog.txt
[2026-01-23 13:25:38] -rw------- 1 boinc boinc    563872 Jan 23 13:25 log.48310670._000888.job.log.1
[2026-01-23 13:25:38] -rw------- 1 boinc boinc       357 Jan 23 13:25 output.list
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc       620 Jan 23 13:25 runtime_log
[2026-01-23 13:25:38] -rw------- 1 boinc boinc    860160 Jan 23 13:25 result.tar.gz
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc      8896 Jan 23 13:25 runtime_log.err
[2026-01-23 13:25:38] -rw------- 1 boinc boinc       657 Jan 23 13:25 XVNODmuDI38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAnuKDmlfElQo.diag
[2026-01-23 13:25:38] -rw-r--r-- 1 boinc boinc     12163 Jan 23 13:25 stderr.txt
[2026-01-23 13:25:38] HITS file was successfully produced:
[2026-01-23 13:25:38] -rw------- 1 boinc boinc 177942076 Jan 23 13:24 shared/HITS.pool.root.1
[2026-01-23 13:25:38]  *** Contents of shared directory: ***
[2026-01-23 13:25:38] total 664660
[2026-01-23 13:25:38] -rw-r--r-- 2 boinc boinc 501186162 Jan 23 12:22 ATLAS.root_0
[2026-01-23 13:25:38] -rw-r--r-- 2 boinc boinc    597753 Jan 23 12:22 input.tar.gz
[2026-01-23 13:25:38] -rw-r--r-- 2 boinc boinc     15845 Jan 23 12:22 start_atlas.sh
[2026-01-23 13:25:38] -rw------- 1 boinc boinc 177942076 Jan 23 13:24 HITS.pool.root.1
[2026-01-23 13:25:38] -rw------- 1 boinc boinc    860160 Jan 23 13:25 result.tar.gz
13:25:40 (398849): run_atlas exited; CPU time 13922.483604
13:25:40 (398849): called boinc_finish(0)

</stderr_txt>
]]>

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