Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:21:43 (25703): wrapper (7.7.26015): starting
05:21:43 (25703): wrapper: running run_atlas (--nthreads 8)
[2026-01-23 05:21:43] Arguments: --nthreads 8
[2026-01-23 05:21:43] Threads: 8
[2026-01-23 05:21:43] Checking for CVMFS
[2026-01-23 05:21:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 05:21:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 05:21:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 05:21:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 05:21:47] 2.11.2.0 6102 55089 134576 155422 2 89 18851222 25165825 939 130560 0 19905500 99.844 11153974 3046 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-23 05:21:47] CVMFS is ok
[2026-01-23 05:21:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 05:21:48] Checking for apptainer binary...
[2026-01-23 05:21:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 05:21:48] Running /usr/bin/apptainer --version
[2026-01-23 05:21:48] apptainer version 1.3.2-1.el7
[2026-01-23 05:21:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 05:22:06] cg-vwn406.simple-grid.lan
[2026-01-23 05:22:06] apptainer works
[2026-01-23 05:22:06] Set ATHENA_PROC_NUMBER=8
[2026-01-23 05:22:06] Set ATHENA_CORE_NUMBER=8
[2026-01-23 05:22:06] Starting ATLAS job with PandaID=6979399981
[2026-01-23 05:22:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 13:29:16]  *** The last 200 lines of the pilot log: ***
[2026-01-23 13:29:16] 2026-01-23 12:28:14,533 | INFO     | log transfer has been attempted: DONE
[2026-01-23 13:29:16] 2026-01-23 12:28:14,533 | INFO     | job 6979399981 has finished - writing final server update
[2026-01-23 13:29:16] 2026-01-23 12:28:14,534 | INFO     | total number of processed events: 400 (read)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,536 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6979399981/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,536 | INFO     | extracted standard info from prmon json
[2026-01-23 13:29:16] 2026-01-23 12:28:14,536 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 13:29:16] 2026-01-23 12:28:14,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 13:29:16] 2026-01-23 12:28:14,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 13:29:16] 2026-01-23 12:28:14,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 13:29:16] 2026-01-23 12:28:14,546 | INFO     | fitting pss+swap vs Time
[2026-01-23 13:29:16] 2026-01-23 12:28:14,547 | INFO     | sum of square deviations: 31581087018.0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,562 | INFO     | sum of deviations: 282388699095.9997
[2026-01-23 13:29:16] 2026-01-23 12:28:14,563 | INFO     | mean x: 1769157015.0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,563 | INFO     | mean y: 2537127.5224839402
[2026-01-23 13:29:16] 2026-01-23 12:28:14,563 | INFO     | intersect: -15816739380.523775
[2026-01-23 13:29:16] 2026-01-23 12:28:14,564 | INFO     | chi2: 7.9191161661204275
[2026-01-23 13:29:16] 2026-01-23 12:28:14,565 | INFO     | sum of square deviations: 30577524015.5
[2026-01-23 13:29:16] 2026-01-23 12:28:14,572 | INFO     | sum of deviations: 310556280281.9999
[2026-01-23 13:29:16] 2026-01-23 12:28:14,572 | INFO     | mean x: 1769156862.5
[2026-01-23 13:29:16] 2026-01-23 12:28:14,572 | INFO     | mean y: 2541365.632034632
[2026-01-23 13:29:16] 2026-01-23 12:28:14,572 | INFO     | intersect: -17965649066.49277
[2026-01-23 13:29:16] 2026-01-23 12:28:14,573 | INFO     | chi2: 7.188661314343908
[2026-01-23 13:29:16] 2026-01-23 12:28:14,573 | INFO     | current chi2=7.188661314343908 (change=9.223944142927873 %)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,573 | INFO     | right removable region: 461
[2026-01-23 13:29:16] 2026-01-23 12:28:14,574 | INFO     | sum of square deviations: 30577524015.5
[2026-01-23 13:29:16] 2026-01-23 12:28:14,580 | INFO     | sum of deviations: 111554759366.99997
[2026-01-23 13:29:16] 2026-01-23 12:28:14,581 | INFO     | mean x: 1769157167.5
[2026-01-23 13:29:16] 2026-01-23 12:28:14,581 | INFO     | mean y: 2563078.9134199135
[2026-01-23 13:29:16] 2026-01-23 12:28:14,581 | INFO     | intersect: -6451782341.691055
[2026-01-23 13:29:16] 2026-01-23 12:28:14,582 | INFO     | chi2: 3.125684650621443
[2026-01-23 13:29:16] 2026-01-23 12:28:14,582 | INFO     | current chi2=3.125684650621443 (change=60.52988003896507 %)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,583 | INFO     | sum of square deviations: 29595449788.0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,589 | INFO     | sum of deviations: -168658594.9999962
[2026-01-23 13:29:16] 2026-01-23 12:28:14,589 | INFO     | mean x: 1769157320.0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,590 | INFO     | mean y: 2580395.8708971553
[2026-01-23 13:29:16] 2026-01-23 12:28:14,590 | INFO     | intersect: 12662472.340846382
[2026-01-23 13:29:16] 2026-01-23 12:28:14,590 | INFO     | chi2: 0.9699345956153664
[2026-01-23 13:29:16] 2026-01-23 12:28:14,591 | INFO     | current chi2=0.9699345956153664 (change=68.96889148998041 %)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,591 | INFO     | sum of square deviations: 28634631773.0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,598 | INFO     | sum of deviations: -18422069082.500008
[2026-01-23 13:29:16] 2026-01-23 12:28:14,598 | INFO     | mean x: 1769157472.5
[2026-01-23 13:29:16] 2026-01-23 12:28:14,599 | INFO     | mean y: 2583284.9358407077
[2026-01-23 13:29:16] 2026-01-23 12:28:14,599 | INFO     | intersect: 1140769430.8092837
[2026-01-23 13:29:16] 2026-01-23 12:28:14,599 | INFO     | chi2: 0.9053884398727636
[2026-01-23 13:29:16] 2026-01-23 12:28:14,599 | INFO     | current chi2=0.9053884398727636 (change=6.654691567285738 %)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,600 | INFO     | left removable region: 30
[2026-01-23 13:29:16] 2026-01-23 12:28:14,600 | INFO     | sum of square deviations: 24826065480.0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,606 | INFO     | sum of deviations: 33846692348.99999
[2026-01-23 13:29:16] 2026-01-23 12:28:14,606 | INFO     | mean x: 1769157747.0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,606 | INFO     | mean y: 2584321.9327146173
[2026-01-23 13:29:16] 2026-01-23 12:28:14,606 | INFO     | intersect: -2409402306.7096167
[2026-01-23 13:29:16] 2026-01-23 12:28:14,607 | INFO     | chi2: 0.05579848902356141
[2026-01-23 13:29:16] 2026-01-23 12:28:14,607 | INFO     | current memory leak: 1.36 B/s (using 431 data points, chi2=0.06)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | could have reported an average CPU frequency of 1999 MHz (19 samples)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | ..............................
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . Timing measurements:
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . get job = 0 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . initial setup = 126 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . payload setup = 153 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . stage-in = 0 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . payload execution = 28619 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . stage-out = 3 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | . log creation = 1 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,608 | INFO     | ..............................
[2026-01-23 13:29:16] 2026-01-23 12:28:14,744 | INFO     | 
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | job summary report
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | --------------------------------------------------
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | PanDA job id: 6979399981
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | task id: 48312995
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | errors: (none)
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | pilot state: finished 
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | transexitcode: 0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | exeerrorcode: 0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,745 | INFO     | exeerrordiag: 
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | exitcode: 0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | exitmsg: OK
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | cpuconsumptiontime: 106136 s
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | nevents: 400
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | neventsw: 0
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | pid: 1828
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | pgrp: 1828
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | corecount: 8
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | event service: False
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | sizes: {0: 2283911, 1: 2284368, 2: 2284456, 12: 2284456, 28778: 2321641, 28782: 2330639, 28785: 2330823, 28787: 2331017}
[2026-01-23 13:29:16] 2026-01-23 12:28:14,746 | INFO     | --------------------------------------------------
[2026-01-23 13:29:16] 2026-01-23 12:28:14,747 | INFO     | 
[2026-01-23 13:29:16] 2026-01-23 12:28:14,747 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-23 13:29:16] 2026-01-23 12:28:15,167 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,167 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,167 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 13:29:16] 2026-01-23 12:28:15,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,170 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 13:29:16] 2026-01-23 12:28:15,170 | INFO     | job 6979399981 has completed (purged errors)
[2026-01-23 13:29:16] 2026-01-23 12:28:15,170 | INFO     | overall cleanup function is called
[2026-01-23 13:29:16] 2026-01-23 12:28:16,178 | INFO     | --- collectZombieJob: --- 10, [1828]
[2026-01-23 13:29:16] 2026-01-23 12:28:16,179 | INFO     | zombie collector waiting for pid 1828
[2026-01-23 13:29:16] 2026-01-23 12:28:16,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 13:29:16] 2026-01-23 12:28:16,179 | INFO     | collected zombie processes
[2026-01-23 13:29:16] 2026-01-23 12:28:16,179 | INFO     | will attempt to kill all subprocesses of pid=1828
[2026-01-23 13:29:16] 2026-01-23 12:28:16,262 | INFO     | process IDs to be killed: [1828] (in reverse order)
[2026-01-23 13:29:16] 2026-01-23 12:28:17,453 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 13:29:16] 2026-01-23 12:28:17,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 13:29:16] 2026-01-23 12:28:17,456 | INFO     | did not find any defunct processes belonging to 1828
[2026-01-23 13:29:16] 2026-01-23 12:28:17,457 | INFO     | did not find any defunct processes belonging to 1828
[2026-01-23 13:29:16] 2026-01-23 12:28:17,458 | INFO     | ready for new job
[2026-01-23 13:29:16] 2026-01-23 12:28:17,458 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 13:29:16] 2026-01-23 12:28:17,461 | INFO     | **************************************
[2026-01-23 13:29:16] 2026-01-23 12:28:17,461 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 13:29:16] 2026-01-23 12:28:17,461 | INFO     | **************************************
[2026-01-23 13:29:16] 2026-01-23 12:28:17,461 | INFO     | 
[2026-01-23 13:29:16] 2026-01-23 12:28:17,462 | INFO     | pilot is running in a VM
[2026-01-23 13:29:16] 2026-01-23 12:28:17,462 | INFO     | architecture information:
[2026-01-23 13:29:16] 2026-01-23 12:28:17,470 | INFO     | executing command: cat /etc/os-release
[2026-01-23 13:29:16] 2026-01-23 12:28:17,805 | INFO     | cat /etc/os-release:
[2026-01-23 13:29:16] NAME="CentOS Linux"
[2026-01-23 13:29:16] VERSION="7 (Core)"
[2026-01-23 13:29:16] ID="centos"
[2026-01-23 13:29:16] ID_LIKE="rhel fedora"
[2026-01-23 13:29:16] VERSION_ID="7"
[2026-01-23 13:29:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 13:29:16] ANSI_COLOR="0;31"
[2026-01-23 13:29:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 13:29:16] HOME_URL="https://www.centos.org/"
[2026-01-23 13:29:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 13:29:16] 
[2026-01-23 13:29:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 13:29:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 13:29:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 13:29:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 13:29:16] 
[2026-01-23 13:29:16] 2026-01-23 12:28:17,805 | INFO     | **************************************
[2026-01-23 13:29:16] 2026-01-23 12:28:18,309 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-23 13:29:16] 2026-01-23 12:28:18,514 | INFO     | sufficient remaining disk space (493170458624 B)
[2026-01-23 13:29:16] 2026-01-23 12:28:18,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 13:29:16] 2026-01-23 12:28:18,515 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 13:29:16] 2026-01-23 12:28:18,515 | INFO     | update_server=False
[2026-01-23 13:29:16] 2026-01-23 12:28:18,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 13:29:16] 2026-01-23 12:28:18,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 13:29:16] 2026-01-23 12:28:18,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 13:29:16] 2026-01-23 12:28:18,518 | INFO     | aborting loop
[2026-01-23 13:29:16] 2026-01-23 12:28:18,810 | INFO     | all payload control threads have been joined
[2026-01-23 13:29:16] 2026-01-23 12:28:18,986 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 13:29:16] 2026-01-23 12:28:19,488 | INFO     | all data control threads have been joined
[2026-01-23 13:29:16] 2026-01-23 12:28:19,522 | INFO     | [job] retrieve thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:19,524 | INFO     | [job] job monitor thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:19,637 | INFO     | [payload] validate_post thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:19,762 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 13:29:16] 2026-01-23 12:28:19,817 | INFO     | [payload] control thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,037 | INFO     | all job control threads have been joined
[2026-01-23 13:29:16] 2026-01-23 12:28:20,174 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,182 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,280 | INFO     | [data] copytool_in thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,495 | INFO     | [data] control thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,524 | INFO     | [data] copytool_out thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,697 | INFO     | [job] validate thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,768 | INFO     | [job] queue monitor thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,866 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:20,905 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:21,026 | INFO     | [payload] failed_post thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:21,043 | INFO     | [job] control thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:22,995 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 13:29:16] 2026-01-23 12:28:46,624 | INFO     | PID=29778 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-23 13:29:16] 2026-01-23 12:28:46,624 | INFO     | .. there are 2 such processes running
[2026-01-23 13:29:16] 2026-01-23 12:28:46,626 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 13:29:16] 2026-01-23 12:28:46,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 13:29:16] 2026-01-23 12:28:46,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 13:29:16] 2026-01-23 12:29:05,380 | INFO     | [monitor] cgroup control has ended
[2026-01-23 13:29:16] 2026-01-23 12:29:05,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497184601920)>', '<ExcThread(monitor, started 140496299095808)>']
[2026-01-23 13:29:16] 2026-01-23 12:29:05,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 13:29:16] 2026-01-23 12:29:05,740 | INFO     | [monitor] control thread has ended
[2026-01-23 13:29:16] 2026-01-23 12:29:10,445 | INFO     | all workflow threads have been joined
[2026-01-23 13:29:16] 2026-01-23 12:29:10,446 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 13:29:16] 2026-01-23 12:29:10,446 | INFO     | traces error code: 0
[2026-01-23 13:29:16] 2026-01-23 12:29:10,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 13:29:16] 2026-01-23 12:29:10,697 [wrapper] ==== pilot stdout END ====
[2026-01-23 13:29:16] 2026-01-23 12:29:10,837 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 13:29:16] 2026-01-23 12:29:10,925 [wrapper] pilotpid: 29778
[2026-01-23 13:29:16] 2026-01-23 12:29:11,032 [wrapper] Pilot exit status: 0
[2026-01-23 13:29:16] 2026-01-23 12:29:11,571 [wrapper] pandaids: 6979399981
[2026-01-23 13:29:16] 2026-01-23 12:29:12,455 [wrapper] cleanup supervisor_pilot 11231 29779
[2026-01-23 13:29:16] 2026-01-23 12:29:12,568 [wrapper] Test setup, not cleaning
[2026-01-23 13:29:16] 2026-01-23 12:29:12,673 [wrapper] apfmon messages muted
[2026-01-23 13:29:16] 2026-01-23 12:29:12,773 [wrapper] ==== wrapper stdout END ====
[2026-01-23 13:29:16] 2026-01-23 12:29:12,877 [wrapper] ==== wrapper stderr END ====
[2026-01-23 13:29:16]  *** Error codes and diagnostics ***
[2026-01-23 13:29:16]     "exeErrorCode": 0,
[2026-01-23 13:29:16]     "exeErrorDiag": "",
[2026-01-23 13:29:16]     "pilotErrorCode": 0,
[2026-01-23 13:29:16]     "pilotErrorDiag": "",
[2026-01-23 13:29:16]  *** Listing of results directory ***
[2026-01-23 13:29:16] total 657548
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc    584422 Jan 22 08:50 pilot3.tar.gz
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc      5111 Jan 22 08:51 queuedata.json
[2026-01-23 13:29:16] -rwx------. 1 boinc boinc     36322 Jan 22 08:51 runpilot2-wrapper.sh
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc       100 Jan 23 05:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 13:29:16] -rwxr-xr-x. 1 boinc boinc      7986 Jan 23 05:21 run_atlas
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc       105 Jan 23 05:21 job.xml
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc      6391 Jan 23 05:21 init_data.xml
[2026-01-23 13:29:16] -rw-r--r--. 2 boinc boinc 313238710 Jan 23 05:21 EVNT.48312993._000003.pool.root.1
[2026-01-23 13:29:16] -rw-r--r--. 2 boinc boinc     15845 Jan 23 05:21 start_atlas.sh
[2026-01-23 13:29:16] drwxrwx--x. 2 boinc boinc        68 Jan 23 05:21 shared
[2026-01-23 13:29:16] -rw-r--r--. 2 boinc boinc    597778 Jan 23 05:21 input.tar.gz
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc         0 Jan 23 05:21 boinc_lockfile
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc      2642 Jan 23 05:22 pandaJob.out
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc       415 Jan 23 05:28 workernode_map.json
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc   1003905 Jan 23 05:28 agis_schedconf.cvmfs.json
[2026-01-23 13:29:16] drwx------. 5 boinc boinc      4096 Jan 23 05:28 pilot3
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc 346793629 Jan 23 13:26 HITS.48312995._000133.pool.root.1
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc       531 Jan 23 13:27 boinc_task_state.xml
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc      1017 Jan 23 13:28 memory_monitor_summary.json
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc   1516246 Jan 23 13:28 agis_ddmendpoints.agis.ALL.json
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc    682447 Jan 23 13:28 log.48312995._000133.job.log.tgz.1
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc      6320 Jan 23 13:28 heartbeat.json
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc        95 Jan 23 13:28 pilot_heartbeat.json
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc      4880 Jan 23 13:29 pilotlog.txt
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc   4002328 Jan 23 13:29 log.48312995._000133.job.log.1
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc       357 Jan 23 13:29 output.list
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc        29 Jan 23 13:29 wrapper_checkpoint.txt
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc      8192 Jan 23 13:29 boinc_mmap_file
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc       620 Jan 23 13:29 runtime_log
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc   4700160 Jan 23 13:29 result.tar.gz
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc      8816 Jan 23 13:29 runtime_log.err
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc       658 Jan 23 13:29 AJLLDmqe428nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR2zKDmlVmLNn.diag
[2026-01-23 13:29:16] -rw-r--r--. 1 boinc boinc     20714 Jan 23 13:29 stderr.txt
[2026-01-23 13:29:16] HITS file was successfully produced:
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc 346793629 Jan 23 13:26 shared/HITS.pool.root.1
[2026-01-23 13:29:16]  *** Contents of shared directory: ***
[2026-01-23 13:29:16] total 649760
[2026-01-23 13:29:16] -rw-r--r--. 2 boinc boinc 313238710 Jan 23 05:21 ATLAS.root_0
[2026-01-23 13:29:16] -rw-r--r--. 2 boinc boinc     15845 Jan 23 05:21 start_atlas.sh
[2026-01-23 13:29:16] -rw-r--r--. 2 boinc boinc    597778 Jan 23 05:21 input.tar.gz
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc 346793629 Jan 23 13:26 HITS.pool.root.1
[2026-01-23 13:29:16] -rw-------. 1 boinc boinc   4700160 Jan 23 13:29 result.tar.gz
13:29:18 (25703): run_atlas exited; CPU time 106461.099561
13:29:18 (25703): called boinc_finish(0)

</stderr_txt>
]]>

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