Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
04:52:38 (1474736): wrapper (7.7.26015): starting
04:52:38 (1474736): wrapper: running run_atlas (--nthreads 12)
[2026-01-23 04:52:38] Arguments: --nthreads 12
[2026-01-23 04:52:38] Threads: 12
[2026-01-23 04:52:38] Checking for CVMFS
[2026-01-23 04:52:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 04:52:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 04:52:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 04:52:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 04:52:45] 2.13.3.0 2626509 1940 55812 155422 1 188 2695654 4096001 0 130560 0 1767275 99.990 44008 1293 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-23 04:52:45] CVMFS is ok
[2026-01-23 04:52:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 04:52:45] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-23 04:52:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-23 04:52:45] Further information can be found at the LHC@home message board.
[2026-01-23 04:52:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 04:52:45] Checking for apptainer binary...
[2026-01-23 04:52:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 04:52:45] Running /usr/bin/apptainer --version
[2026-01-23 04:52:45] apptainer version 1.4.5
[2026-01-23 04:52:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 04:52:45] BoincUbuntu
[2026-01-23 04:52:45] apptainer works
[2026-01-23 04:52:45] Set ATHENA_PROC_NUMBER=12
[2026-01-23 04:52:45] Set ATHENA_CORE_NUMBER=12
[2026-01-23 04:52:45] Starting ATLAS job with PandaID=6977571575
[2026-01-23 04:52:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 05:25:03]  *** The last 200 lines of the pilot log: ***
[2026-01-23 05:25:03]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/log.48301086._007239.job.log.tgz.1
[2026-01-23 05:25:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/76/log.48301086._007239.job.log.tgz.1
[2026-01-23 05:25:03]  workdir=None
[2026-01-23 05:25:03] ]
[2026-01-23 05:25:03] 2026-01-23 05:24:31,118 | INFO     | transferring file log.48301086._007239.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/log.48301086._007239.job.log.tgz.1 to /var/lib/boinc
[2026-01-23 05:25:03] 2026-01-23 05:24:31,118 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/log.48301086._007239.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.483010
[2026-01-23 05:25:03] 2026-01-23 05:24:31,126 | INFO     | adding to output.list: log.48301086._007239.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/76/log.48301086._007239.job.log.tg
[2026-01-23 05:25:03] 2026-01-23 05:24:31,126 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-23 05:25:03] 2026-01-23 05:24:31,126 | INFO     | summary of transferred files:
[2026-01-23 05:25:03] 2026-01-23 05:24:31,126 | INFO     |  -- lfn=log.48301086._007239.job.log.tgz.1, status_code=0, status=transferred
[2026-01-23 05:25:03] 2026-01-23 05:24:31,127 | INFO     | stage-out finished correctly
[2026-01-23 05:25:03] 2026-01-23 05:24:32,006 | INFO     | time since job start (1897s) is within the limit (349056.0s)
[2026-01-23 05:25:03] 2026-01-23 05:24:33,160 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-23 05:25:03] 2026-01-23 05:24:34,011 | INFO     | time since job start (1899s) is within the limit (349056.0s)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,917 | WARNING  | process 1483794 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 05:25:03] 2026-01-23 05:24:34,917 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,917 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,917 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-23 05:25:03] 2026-01-23 05:24:34,918 | WARNING  | maxPSS not found in memory monitor output
[2026-01-23 05:25:03] 2026-01-23 05:24:34,918 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 5201521 B
[2026-01-23 05:25:03] 2026-01-23 05:24:34,918 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15614 B
[2026-01-23 05:25:03] 2026-01-23 05:24:34,918 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-23 05:25:03] 2026-01-23 05:24:34,929 | INFO     | sufficient remaining disk space (284506980352 B)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,929 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,929 | INFO     | size of work directory /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575: 5481034 B (within 5033164800 B limit)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,929 | INFO     | pfn file=/var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/HITS.48301086._007239.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,929 | INFO     | total size of present files: 0 B (workdir size: 5481034 B)
[2026-01-23 05:25:03] 2026-01-23 05:24:34,929 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/HITS.48301086._007239.pool.root.1 since it does not exist
[2026-01-23 05:25:03] 2026-01-23 05:24:34,974 | INFO     | number of running child processes to parent process 1483794: 1
[2026-01-23 05:25:03] 2026-01-23 05:24:34,974 | INFO     | maximum number of monitored processes: 6
[2026-01-23 05:25:03] 2026-01-23 05:24:36,015 | INFO     | time since job start (1901s) is within the limit (349056.0s)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,036 | INFO     | job 6977571575 has state=finished
[2026-01-23 05:25:03] 2026-01-23 05:24:36,036 | INFO     | preparing for final server update for job 6977571575 in state='finished'
[2026-01-23 05:25:03] 2026-01-23 05:24:36,036 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/jobReport.json
[2026-01-23 05:25:03] 2026-01-23 05:24:36,037 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-01-23 05:25:03] 2026-01-23 05:24:36,037 | INFO     | this job has now completed (state=finished)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,038 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,038 | INFO     | log transfer has been attempted: DONE
[2026-01-23 05:25:03] 2026-01-23 05:24:36,038 | INFO     | job 6977571575 has finished - writing final server update
[2026-01-23 05:25:03] 2026-01-23 05:24:36,038 | INFO     | total number of processed events: 400 (read)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,039 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6977571575/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,039 | INFO     | extracted standard info from prmon json
[2026-01-23 05:25:03] 2026-01-23 05:24:36,039 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 05:25:03] 2026-01-23 05:24:36,039 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 05:25:03] 2026-01-23 05:24:36,039 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 05:25:03] 2026-01-23 05:24:36,039 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | fitting pss+swap vs Time
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | sum of square deviations: 4279150.0
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | sum of deviations: -1603340896.9999998
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | mean x: 1769144997.5
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | mean y: 2848645.6666666665
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | intersect: 662878075551.6438
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | chi2: 0.038152315607530976
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | current memory leak: -374.69 B/s (using 24 data points, chi2=0.04)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | could have reported an average CPU frequency of 3320 MHz (5 samples)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | ..............................
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . Timing measurements:
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . get job = 0 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . initial setup = 3 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . payload setup = 2 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . stage-in = 0 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . payload execution = 1878 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . stage-out = 0 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,040 | INFO     | . log creation = 0 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,041 | INFO     | ..............................
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | 
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | job summary report
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | --------------------------------------------------
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | PanDA job id: 6977571575
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | task id: 48301086
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | errors: (none)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | pilot state: finished 
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | transexitcode: 0
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | exeerrorcode: 0
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | exeerrordiag: 
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | exitcode: 0
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | exitmsg: OK
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | cpuconsumptiontime: 20503 s
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | nevents: 400
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | neventsw: 0
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | pid: 1483794
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | pgrp: 1483794
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | corecount: 12
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | event service: False
[2026-01-23 05:25:03] 2026-01-23 05:24:36,070 | INFO     | sizes: {0: 2283984, 1: 2284246, 11: 2284274, 1884: 2309208, 1885: 2318220, 1887: 2318276, 1890: 2318658}
[2026-01-23 05:25:03] 2026-01-23 05:24:36,071 | INFO     | --------------------------------------------------
[2026-01-23 05:25:03] 2026-01-23 05:24:36,071 | INFO     | 
[2026-01-23 05:25:03] 2026-01-23 05:24:36,071 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-23 05:25:03] 2026-01-23 05:24:36,081 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | job 6977571575 has completed (purged errors)
[2026-01-23 05:25:03] 2026-01-23 05:24:36,082 | INFO     | overall cleanup function is called
[2026-01-23 05:25:03] 2026-01-23 05:24:37,089 | INFO     | --- collectZombieJob: --- 10, [1483794]
[2026-01-23 05:25:03] 2026-01-23 05:24:37,089 | INFO     | zombie collector waiting for pid 1483794
[2026-01-23 05:25:03] 2026-01-23 05:24:37,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 05:25:03] 2026-01-23 05:24:37,089 | INFO     | collected zombie processes
[2026-01-23 05:25:03] 2026-01-23 05:24:37,089 | INFO     | will attempt to kill all subprocesses of pid=1483794
[2026-01-23 05:25:03] 2026-01-23 05:24:37,134 | INFO     | process IDs to be killed: [1483794] (in reverse order)
[2026-01-23 05:25:03] 2026-01-23 05:24:37,159 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 05:25:03] 2026-01-23 05:24:37,159 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 05:25:03] 2026-01-23 05:24:37,160 | INFO     | did not find any defunct processes belonging to 1483794
[2026-01-23 05:25:03] 2026-01-23 05:24:37,162 | INFO     | did not find any defunct processes belonging to 1483794
[2026-01-23 05:25:03] 2026-01-23 05:24:37,162 | INFO     | ready for new job
[2026-01-23 05:25:03] 2026-01-23 05:24:37,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 05:25:03] 2026-01-23 05:24:37,163 | INFO     | **************************************
[2026-01-23 05:25:03] 2026-01-23 05:24:37,163 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 05:25:03] 2026-01-23 05:24:37,163 | INFO     | **************************************
[2026-01-23 05:25:03] 2026-01-23 05:24:37,163 | INFO     | 
[2026-01-23 05:25:03] 2026-01-23 05:24:37,163 | INFO     | architecture information:
[2026-01-23 05:25:03] 2026-01-23 05:24:37,163 | INFO     | executing command: cat /etc/os-release
[2026-01-23 05:25:03] 2026-01-23 05:24:37,170 | INFO     | cat /etc/os-release:
[2026-01-23 05:25:03] NAME="CentOS Linux"
[2026-01-23 05:25:03] VERSION="7 (Core)"
[2026-01-23 05:25:03] ID="centos"
[2026-01-23 05:25:03] ID_LIKE="rhel fedora"
[2026-01-23 05:25:03] VERSION_ID="7"
[2026-01-23 05:25:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 05:25:03] ANSI_COLOR="0;31"
[2026-01-23 05:25:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 05:25:03] HOME_URL="https://www.centos.org/"
[2026-01-23 05:25:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 05:25:03] 
[2026-01-23 05:25:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 05:25:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 05:25:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 05:25:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 05:25:03] 
[2026-01-23 05:25:03] 2026-01-23 05:24:37,171 | INFO     | **************************************
[2026-01-23 05:25:03] 2026-01-23 05:24:37,674 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-23 05:25:03] 2026-01-23 05:24:37,682 | INFO     | sufficient remaining disk space (284513271808 B)
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | INFO     | update_server=False
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 05:25:03] 2026-01-23 05:24:37,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 05:25:03] 2026-01-23 05:24:37,718 | INFO     | all payload control threads have been joined
[2026-01-23 05:25:03] 2026-01-23 05:24:38,457 | INFO     | all data control threads have been joined
[2026-01-23 05:25:03] 2026-01-23 05:24:38,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 05:25:03] 2026-01-23 05:24:38,482 | INFO     | aborting loop
[2026-01-23 05:25:03] 2026-01-23 05:24:38,688 | INFO     | [job] retrieve thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:38,689 | INFO     | [job] queue monitor thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:38,689 | INFO     | [payload] failed_post thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:38,697 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:38,720 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:38,724 | INFO     | [payload] control thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:38,805 | INFO     | [data] copytool_in thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:38,843 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:39,161 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 05:25:03] 2026-01-23 05:24:39,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 05:25:03] 2026-01-23 05:24:39,354 | INFO     | all job control threads have been joined
[2026-01-23 05:25:03] 2026-01-23 05:24:39,373 | INFO     | [payload] validate_post thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:39,462 | INFO     | [data] control thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:39,487 | INFO     | [job] job monitor thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:40,079 | INFO     | [job] validate thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:40,359 | INFO     | [job] control thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:41,164 | INFO     | [data] copytool_out thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:43,198 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:48,348 | INFO     | job.realtimelogging is not enabled
[2026-01-23 05:25:03] 2026-01-23 05:24:49,353 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 05:25:03] 2026-01-23 05:24:57,965 | INFO     | [monitor] cgroup control has ended
[2026-01-23 05:25:03] 2026-01-23 05:24:58,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126556898768704)>', '<ExcThread(monitor, started 126556546512640)>']
[2026-01-23 05:25:03] 2026-01-23 05:24:59,795 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 05:25:03] 2026-01-23 05:24:59,795 | INFO     | [monitor] control thread has ended
[2026-01-23 05:25:03] 2026-01-23 05:25:03,855 | INFO     | all workflow threads have been joined
[2026-01-23 05:25:03] 2026-01-23 05:25:03,860 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 05:25:03] 2026-01-23 05:25:03,860 | INFO     | traces error code: 0
[2026-01-23 05:25:03] 2026-01-23 05:25:03,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 05:25:03] 2026-01-23 05:25:03,901 [wrapper] ==== pilot stdout END ====
[2026-01-23 05:25:03] 2026-01-23 05:25:03,902 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 05:25:03] 2026-01-23 05:25:03,904 [wrapper] pilotpid: 1479057
[2026-01-23 05:25:03] 2026-01-23 05:25:03,905 [wrapper] Pilot exit status: 0
[2026-01-23 05:25:03] 2026-01-23 05:25:03,910 [wrapper] pandaids: 6977571575
[2026-01-23 05:25:03] 2026-01-23 05:25:03,926 [wrapper] cleanup supervisor_pilot 1514475 1479058
[2026-01-23 05:25:03] 2026-01-23 05:25:03,927 [wrapper] Test setup, not cleaning
[2026-01-23 05:25:03] 2026-01-23 05:25:03,929 [wrapper] apfmon messages muted
[2026-01-23 05:25:03] 2026-01-23 05:25:03,930 [wrapper] ==== wrapper stdout END ====
[2026-01-23 05:25:03] 2026-01-23 05:25:03,931 [wrapper] ==== wrapper stderr END ====
[2026-01-23 05:25:03]  *** Error codes and diagnostics ***
[2026-01-23 05:25:03]     "exeErrorCode": 0,
[2026-01-23 05:25:03]     "exeErrorDiag": "",
[2026-01-23 05:25:03]     "pilotErrorCode": 0,
[2026-01-23 05:25:03]     "pilotErrorDiag": "",
[2026-01-23 05:25:03]  *** Listing of results directory ***
[2026-01-23 05:25:03] total 671452
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc      5111 Jan 22 12:45 queuedata.json
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc    584422 Jan 22 12:45 pilot3.tar.gz
[2026-01-23 05:25:03] -rwx------ 1 boinc boinc     36322 Jan 22 12:45 runpilot2-wrapper.sh
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc       100 Jan 23 04:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 05:25:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 04:52 run_atlas
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc       105 Jan 23 04:52 job.xml
[2026-01-23 05:25:03] -rw-r--r-- 2 boinc boinc 499202433 Jan 23 04:52 EVNT.48301084._000160.pool.root.1
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc      9654 Jan 23 04:52 init_data.xml
[2026-01-23 05:25:03] drwxrwx--x 2 boinc boinc      4096 Jan 23 04:52 shared
[2026-01-23 05:25:03] -rw-r--r-- 2 boinc boinc    597755 Jan 23 04:52 input.tar.gz
[2026-01-23 05:25:03] -rw-r--r-- 2 boinc boinc     15845 Jan 23 04:52 start_atlas.sh
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc         0 Jan 23 04:52 boinc_lockfile
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc      2520 Jan 23 04:52 pandaJob.out
[2026-01-23 05:25:03] -rw------- 1 boinc boinc   1003905 Jan 23 04:52 agis_schedconf.cvmfs.json
[2026-01-23 05:25:03] -rw------- 1 boinc boinc   1516246 Jan 23 04:52 agis_ddmendpoints.agis.ALL.json
[2026-01-23 05:25:03] -rw------- 1 boinc boinc       423 Jan 23 04:52 workernode_map.json
[2026-01-23 05:25:03] drwx------ 5 boinc boinc      4096 Jan 23 04:52 pilot3
[2026-01-23 05:25:03] -rw------- 1 boinc boinc        95 Jan 23 05:24 pilot_heartbeat.json
[2026-01-23 05:25:03] -rw------- 1 boinc boinc 183041482 Jan 23 05:24 HITS.48301086._007239.pool.root.1
[2026-01-23 05:25:03] -rw------- 1 boinc boinc      1010 Jan 23 05:24 memory_monitor_summary.json
[2026-01-23 05:25:03] -rw------- 1 boinc boinc    374331 Jan 23 05:24 log.48301086._007239.job.log.tgz.1
[2026-01-23 05:25:03] -rw------- 1 boinc boinc      6283 Jan 23 05:24 heartbeat.json
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc      8192 Jan 23 05:24 boinc_mmap_file
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc        27 Jan 23 05:24 wrapper_checkpoint.txt
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc       530 Jan 23 05:24 boinc_task_state.xml
[2026-01-23 05:25:03] -rw------- 1 boinc boinc      4628 Jan 23 05:25 pilotlog.txt
[2026-01-23 05:25:03] -rw------- 1 boinc boinc    312093 Jan 23 05:25 log.48301086._007239.job.log.1
[2026-01-23 05:25:03] -rw------- 1 boinc boinc       357 Jan 23 05:25 output.list
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc       620 Jan 23 05:25 runtime_log
[2026-01-23 05:25:03] -rw------- 1 boinc boinc    706560 Jan 23 05:25 result.tar.gz
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc      8910 Jan 23 05:25 runtime_log.err
[2026-01-23 05:25:03] -rw------- 1 boinc boinc       647 Jan 23 05:25 n0pMDmKF928nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxU0KDmDazH9m.diag
[2026-01-23 05:25:03] -rw-r--r-- 1 boinc boinc     22662 Jan 23 05:25 stderr.txt
[2026-01-23 05:25:03] HITS file was successfully produced:
[2026-01-23 05:25:03] -rw------- 1 boinc boinc 183041482 Jan 23 05:24 shared/HITS.pool.root.1
[2026-01-23 05:25:03]  *** Contents of shared directory: ***
[2026-01-23 05:25:03] total 667556
[2026-01-23 05:25:03] -rw-r--r-- 2 boinc boinc 499202433 Jan 23 04:52 ATLAS.root_0
[2026-01-23 05:25:03] -rw-r--r-- 2 boinc boinc    597755 Jan 23 04:52 input.tar.gz
[2026-01-23 05:25:03] -rw-r--r-- 2 boinc boinc     15845 Jan 23 04:52 start_atlas.sh
[2026-01-23 05:25:03] -rw------- 1 boinc boinc 183041482 Jan 23 05:24 HITS.pool.root.1
[2026-01-23 05:25:03] -rw------- 1 boinc boinc    706560 Jan 23 05:25 result.tar.gz
05:25:05 (1474736): run_atlas exited; CPU time 20510.553125
05:25:05 (1474736): called boinc_finish(0)

</stderr_txt>
]]>

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