Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:49:52 (1213714): wrapper (7.7.26015): starting
07:49:52 (1213714): wrapper: running run_atlas (--nthreads 2)
[2026-01-23 07:49:52] Arguments: --nthreads 2
[2026-01-23 07:49:52] Threads: 2
[2026-01-23 07:49:52] Checking for CVMFS
[2026-01-23 07:49:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 07:49:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 07:49:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 07:49:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 07:49:53] 2.9.2.0 878484 3407 59164 155425 1 50 20058750 36864000 0 130560 0 980464 99.981 86004 12636 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-23 07:49:53] CVMFS is ok
[2026-01-23 07:49:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 07:49:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 07:49:53] Further information can be found at the LHC@home message board.
[2026-01-23 07:49:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 07:49:53] Checking for apptainer binary...
[2026-01-23 07:49:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 07:49:53] Running /usr/bin/apptainer --version
[2026-01-23 07:49:53] apptainer version 1.4.1-1.1
[2026-01-23 07:49:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 07:49:53] madmaxA277a
[2026-01-23 07:49:53] apptainer works
[2026-01-23 07:49:53] Set ATHENA_PROC_NUMBER=2
[2026-01-23 07:49:53] Set ATHENA_CORE_NUMBER=2
[2026-01-23 07:49:53] Starting ATLAS job with PandaID=6977660169
[2026-01-23 07:49:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 09:50:29]  *** The last 200 lines of the pilot log: ***
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | job 6977660169 has completed (purged errors)
[2026-01-23 09:50:29] 2026-01-23 08:49:38,343 | INFO     | overall cleanup function is called
[2026-01-23 09:50:29] 2026-01-23 08:49:39,349 | INFO     | --- collectZombieJob: --- 10, [1222147]
[2026-01-23 09:50:29] 2026-01-23 08:49:39,349 | INFO     | zombie collector waiting for pid 1222147
[2026-01-23 09:50:29] 2026-01-23 08:49:39,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 09:50:29] 2026-01-23 08:49:39,350 | INFO     | collected zombie processes
[2026-01-23 09:50:29] 2026-01-23 08:49:39,350 | INFO     | will attempt to kill all subprocesses of pid=1222147
[2026-01-23 09:50:29] 2026-01-23 08:49:39,382 | INFO     | process IDs to be killed: [1222147] (in reverse order)
[2026-01-23 09:50:29] 2026-01-23 08:49:39,402 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 09:50:29] 2026-01-23 08:49:39,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 09:50:29] 2026-01-23 08:49:39,402 | INFO     | did not find any defunct processes belonging to 1222147
[2026-01-23 09:50:29] 2026-01-23 08:49:39,403 | INFO     | did not find any defunct processes belonging to 1222147
[2026-01-23 09:50:29] 2026-01-23 08:49:39,403 | INFO     | ready for new job
[2026-01-23 09:50:29] 2026-01-23 08:49:39,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 09:50:29] 2026-01-23 08:49:39,404 | INFO     | **************************************
[2026-01-23 09:50:29] 2026-01-23 08:49:39,404 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 09:50:29] 2026-01-23 08:49:39,404 | INFO     | **************************************
[2026-01-23 09:50:29] 2026-01-23 08:49:39,404 | INFO     | 
[2026-01-23 09:50:29] 2026-01-23 08:49:39,404 | INFO     | architecture information:
[2026-01-23 09:50:29] 2026-01-23 08:49:39,404 | INFO     | executing command: cat /etc/os-release
[2026-01-23 09:50:29] 2026-01-23 08:49:39,412 | INFO     | cat /etc/os-release:
[2026-01-23 09:50:29] NAME="CentOS Linux"
[2026-01-23 09:50:29] VERSION="7 (Core)"
[2026-01-23 09:50:29] ID="centos"
[2026-01-23 09:50:29] ID_LIKE="rhel fedora"
[2026-01-23 09:50:29] VERSION_ID="7"
[2026-01-23 09:50:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 09:50:29] ANSI_COLOR="0;31"
[2026-01-23 09:50:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 09:50:29] HOME_URL="https://www.centos.org/"
[2026-01-23 09:50:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 09:50:29] 
[2026-01-23 09:50:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 09:50:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 09:50:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 09:50:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 09:50:29] 
[2026-01-23 09:50:29] 2026-01-23 08:49:39,412 | INFO     | **************************************
[2026-01-23 09:50:29] 2026-01-23 08:49:39,915 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 09:50:29] 2026-01-23 08:49:39,926 | INFO     | sufficient remaining disk space (497492688896 B)
[2026-01-23 09:50:29] 2026-01-23 08:49:39,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 09:50:29] 2026-01-23 08:49:39,927 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 09:50:29] 2026-01-23 08:49:39,927 | INFO     | update_server=False
[2026-01-23 09:50:29] 2026-01-23 08:49:39,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 09:50:29] 2026-01-23 08:49:40,095 | INFO     | all payload control threads have been joined
[2026-01-23 09:50:29] 2026-01-23 08:49:40,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 09:50:29] 2026-01-23 08:49:40,394 | INFO     | aborting loop
[2026-01-23 09:50:29] 2026-01-23 08:49:40,694 | INFO     | all data control threads have been joined
[2026-01-23 09:50:29] 2026-01-23 08:49:40,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 09:50:29] 2026-01-23 08:49:40,932 | INFO     | [job] retrieve thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:41,101 | INFO     | [payload] control thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:41,309 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:41,400 | INFO     | [job] job monitor thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:41,486 | INFO     | all job control threads have been joined
[2026-01-23 09:50:29] 2026-01-23 08:49:41,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 09:50:29] 2026-01-23 08:49:41,700 | INFO     | [data] control thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:41,938 | INFO     | [payload] validate_post thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,030 | INFO     | [payload] failed_post thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,114 | INFO     | [job] validate thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,218 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,229 | INFO     | [data] copytool_in thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,334 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,491 | INFO     | [job] control thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,851 | INFO     | [data] copytool_out thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:42,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 09:50:29] 2026-01-23 08:49:43,873 | INFO     | [job] queue monitor thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:45,647 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:49:50,722 | INFO     | job.realtimelogging is not enabled
[2026-01-23 09:50:29] 2026-01-23 08:49:51,728 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 09:50:29] 2026-01-23 08:50:06,232 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-01-23 09:50:29] 2026-01-23 08:50:10,816 | INFO     | PID=1217738 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-23 09:50:29] 2026-01-23 08:50:10,816 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 09:50:29] 2026-01-23 08:50:10,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 09:50:29] 2026-01-23 08:50:10,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 09:50:29] 2026-01-23 08:50:23,614 | INFO     | [monitor] cgroup control has ended
[2026-01-23 09:50:29] 2026-01-23 08:50:23,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045604251456)>', '<ExcThread(monitor, started 140044941629184)>']
[2026-01-23 09:50:29] 2026-01-23 08:50:24,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 09:50:29] 2026-01-23 08:50:24,891 | INFO     | [monitor] control thread has ended
[2026-01-23 09:50:29] 2026-01-23 08:50:28,995 | INFO     | all workflow threads have been joined
[2026-01-23 09:50:29] 2026-01-23 08:50:28,995 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 09:50:29] 2026-01-23 08:50:28,995 | INFO     | traces error code: 0
[2026-01-23 09:50:29] 2026-01-23 08:50:28,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 09:50:29] 2026-01-23 08:50:29,038 [wrapper] ==== pilot stdout END ====
[2026-01-23 09:50:29] 2026-01-23 08:50:29,040 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 09:50:29] 2026-01-23 08:50:29,042 [wrapper] pilotpid: 1217738
[2026-01-23 09:50:29] 2026-01-23 08:50:29,044 [wrapper] Pilot exit status: 0
[2026-01-23 09:50:29] 2026-01-23 08:50:29,050 [wrapper] pandaids: 6977660169
[2026-01-23 09:50:29] 2026-01-23 08:50:29,062 [wrapper] cleanup supervisor_pilot 1227675 1217739
[2026-01-23 09:50:29] 2026-01-23 08:50:29,065 [wrapper] Test setup, not cleaning
[2026-01-23 09:50:29] 2026-01-23 08:50:29,067 [wrapper] apfmon messages muted
[2026-01-23 09:50:29] 2026-01-23 08:50:29,068 [wrapper] ==== wrapper stdout END ====
[2026-01-23 09:50:29] 2026-01-23 08:50:29,070 [wrapper] ==== wrapper stderr END ====
[2026-01-23 09:50:29]  *** Error codes and diagnostics ***
[2026-01-23 09:50:29]     "exeErrorCode": 0,
[2026-01-23 09:50:29]     "exeErrorDiag": "",
[2026-01-23 09:50:29]     "pilotErrorCode": 0,
[2026-01-23 09:50:29]     "pilotErrorDiag": "",
[2026-01-23 09:50:29]  *** Listing of results directory ***
[2026-01-23 09:50:29] total 660668
[2026-01-23 09:50:29] -rwx------ 1 boinc boinc     36322 Jan 22 16:22 runpilot2-wrapper.sh
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc    584422 Jan 22 16:26 pilot3.tar.gz
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc      5111 Jan 22 16:27 queuedata.json
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc       100 Jan 23 07:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 09:50:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 07:49 run_atlas
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc       105 Jan 23 07:49 job.xml
[2026-01-23 09:50:29] -rw-r--r-- 2 boinc boinc 492416918 Jan 23 07:49 EVNT.48301084._000154.pool.root.1
[2026-01-23 09:50:29] drwxrwx--x 2 boinc boinc      4096 Jan 23 07:49 shared
[2026-01-23 09:50:29] -rw-r--r-- 2 boinc boinc    597762 Jan 23 07:49 input.tar.gz
[2026-01-23 09:50:29] -rw-r--r-- 2 boinc boinc     15845 Jan 23 07:49 start_atlas.sh
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc         0 Jan 23 07:49 boinc_setup_complete
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc      6210 Jan 23 07:49 init_data.xml
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc         0 Jan 23 07:49 boinc_lockfile
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc      2521 Jan 23 07:49 pandaJob.out
[2026-01-23 09:50:29] -rw------- 1 boinc boinc   1003905 Jan 23 07:50 agis_schedconf.cvmfs.json
[2026-01-23 09:50:29] -rw------- 1 boinc boinc   1516246 Jan 23 07:50 agis_ddmendpoints.agis.ALL.json
[2026-01-23 09:50:29] -rw------- 1 boinc boinc       430 Jan 23 07:50 workernode_map.json
[2026-01-23 09:50:29] drwx------ 5 boinc boinc      4096 Jan 23 07:50 pilot3
[2026-01-23 09:50:29] -rw------- 1 boinc boinc 177528223 Jan 23 09:49 HITS.48301086._008445.pool.root.1
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc       530 Jan 23 09:49 boinc_task_state.xml
[2026-01-23 09:50:29] -rw------- 1 boinc boinc      1016 Jan 23 09:49 memory_monitor_summary.json
[2026-01-23 09:50:29] -rw------- 1 boinc boinc    296719 Jan 23 09:49 log.48301086._008445.job.log.tgz.1
[2026-01-23 09:50:29] -rw------- 1 boinc boinc      6315 Jan 23 09:49 heartbeat.json
[2026-01-23 09:50:29] -rw------- 1 boinc boinc        95 Jan 23 09:49 pilot_heartbeat.json
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc      8192 Jan 23 09:50 boinc_mmap_file
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc        27 Jan 23 09:50 wrapper_checkpoint.txt
[2026-01-23 09:50:29] -rw------- 1 boinc boinc      4820 Jan 23 09:50 pilotlog.txt
[2026-01-23 09:50:29] -rw------- 1 boinc boinc   1031434 Jan 23 09:50 log.48301086._008445.job.log.1
[2026-01-23 09:50:29] -rw------- 1 boinc boinc       357 Jan 23 09:50 output.list
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc       620 Jan 23 09:50 runtime_log
[2026-01-23 09:50:29] -rw------- 1 boinc boinc   1341440 Jan 23 09:50 result.tar.gz
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc      8921 Jan 23 09:50 runtime_log.err
[2026-01-23 09:50:29] -rw------- 1 boinc boinc       662 Jan 23 09:50 hr3LDmXhB38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgFuKDm9LaSXo.diag
[2026-01-23 09:50:29] -rw-r--r-- 1 boinc boinc     11611 Jan 23 09:50 stderr.txt
[2026-01-23 09:50:29] HITS file was successfully produced:
[2026-01-23 09:50:29] -rw------- 1 boinc boinc 177528223 Jan 23 09:49 shared/HITS.pool.root.1
[2026-01-23 09:50:29]  *** Contents of shared directory: ***
[2026-01-23 09:50:29] total 656164
[2026-01-23 09:50:29] -rw-r--r-- 2 boinc boinc 492416918 Jan 23 07:49 ATLAS.root_0
[2026-01-23 09:50:29] -rw-r--r-- 2 boinc boinc    597762 Jan 23 07:49 input.tar.gz
[2026-01-23 09:50:29] -rw-r--r-- 2 boinc boinc     15845 Jan 23 07:49 start_atlas.sh
[2026-01-23 09:50:29] -rw------- 1 boinc boinc 177528223 Jan 23 09:49 HITS.pool.root.1
[2026-01-23 09:50:29] -rw------- 1 boinc boinc   1341440 Jan 23 09:50 result.tar.gz
09:50:30 (1213714): run_atlas exited; CPU time 13910.257258
09:50:30 (1213714): called boinc_finish(0)

</stderr_txt>
]]>

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