Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:35:14 (3433498): wrapper (7.7.26015): starting
06:35:14 (3433498): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 06:35:14] Arguments: --nthreads 4
[2026-01-23 06:35:14] Threads: 4
[2026-01-23 06:35:14] Checking for CVMFS
[2026-01-23 06:35:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 06:35:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 06:35:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 06:35:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 06:35:14] 2.9.2.0 2785857 3736 103204 155424 1 50 23778710 36864001 0 130560 0 1866474 99.988 98860 11987 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-23 06:35:14] CVMFS is ok
[2026-01-23 06:35:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 06:35:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 06:35:14] Further information can be found at the LHC@home message board.
[2026-01-23 06:35:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 06:35:14] Checking for apptainer binary...
[2026-01-23 06:35:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 06:35:14] Running /usr/bin/apptainer --version
[2026-01-23 06:35:14] apptainer version 1.4.1-1.1
[2026-01-23 06:35:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 06:35:15] thA314a
[2026-01-23 06:35:15] apptainer works
[2026-01-23 06:35:15] Set ATHENA_PROC_NUMBER=4
[2026-01-23 06:35:15] Set ATHENA_CORE_NUMBER=4
[2026-01-23 06:35:15] Starting ATLAS job with PandaID=6977477812
[2026-01-23 06:35:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 07:44:37]  *** The last 200 lines of the pilot log: ***
[2026-01-23 07:44:37] 2026-01-23 06:44:02,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | job 6977477812 has completed (purged errors)
[2026-01-23 07:44:37] 2026-01-23 06:44:02,725 | INFO     | overall cleanup function is called
[2026-01-23 07:44:37] 2026-01-23 06:44:03,731 | INFO     | --- collectZombieJob: --- 10, [3442129]
[2026-01-23 07:44:37] 2026-01-23 06:44:03,731 | INFO     | zombie collector waiting for pid 3442129
[2026-01-23 07:44:37] 2026-01-23 06:44:03,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 07:44:37] 2026-01-23 06:44:03,731 | INFO     | collected zombie processes
[2026-01-23 07:44:37] 2026-01-23 06:44:03,731 | INFO     | will attempt to kill all subprocesses of pid=3442129
[2026-01-23 07:44:37] 2026-01-23 06:44:03,774 | INFO     | process IDs to be killed: [3442129] (in reverse order)
[2026-01-23 07:44:37] 2026-01-23 06:44:03,805 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 07:44:37] 2026-01-23 06:44:03,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 07:44:37] 2026-01-23 06:44:03,807 | INFO     | did not find any defunct processes belonging to 3442129
[2026-01-23 07:44:37] 2026-01-23 06:44:03,808 | INFO     | did not find any defunct processes belonging to 3442129
[2026-01-23 07:44:37] 2026-01-23 06:44:03,808 | INFO     | ready for new job
[2026-01-23 07:44:37] 2026-01-23 06:44:03,808 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 07:44:37] 2026-01-23 06:44:03,809 | INFO     | **************************************
[2026-01-23 07:44:37] 2026-01-23 06:44:03,809 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 07:44:37] 2026-01-23 06:44:03,809 | INFO     | **************************************
[2026-01-23 07:44:37] 2026-01-23 06:44:03,809 | INFO     | 
[2026-01-23 07:44:37] 2026-01-23 06:44:03,809 | INFO     | architecture information:
[2026-01-23 07:44:37] 2026-01-23 06:44:03,809 | INFO     | executing command: cat /etc/os-release
[2026-01-23 07:44:37] 2026-01-23 06:44:03,822 | INFO     | cat /etc/os-release:
[2026-01-23 07:44:37] NAME="CentOS Linux"
[2026-01-23 07:44:37] VERSION="7 (Core)"
[2026-01-23 07:44:37] ID="centos"
[2026-01-23 07:44:37] ID_LIKE="rhel fedora"
[2026-01-23 07:44:37] VERSION_ID="7"
[2026-01-23 07:44:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 07:44:37] ANSI_COLOR="0;31"
[2026-01-23 07:44:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 07:44:37] HOME_URL="https://www.centos.org/"
[2026-01-23 07:44:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 07:44:37] 
[2026-01-23 07:44:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 07:44:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 07:44:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 07:44:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 07:44:37] 
[2026-01-23 07:44:37] 2026-01-23 06:44:03,823 | INFO     | **************************************
[2026-01-23 07:44:37] 2026-01-23 06:44:04,326 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 07:44:37] 2026-01-23 06:44:04,343 | INFO     | sufficient remaining disk space (234067329024 B)
[2026-01-23 07:44:37] 2026-01-23 06:44:04,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | INFO     | update_server=False
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 07:44:37] 2026-01-23 06:44:04,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 07:44:37] 2026-01-23 06:44:05,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 07:44:37] 2026-01-23 06:44:05,119 | INFO     | aborting loop
[2026-01-23 07:44:37] 2026-01-23 06:44:05,304 | INFO     | all payload control threads have been joined
[2026-01-23 07:44:37] 2026-01-23 06:44:05,349 | INFO     | [job] retrieve thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:05,350 | INFO     | [job] queue monitor thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:05,386 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:05,447 | INFO     | all data control threads have been joined
[2026-01-23 07:44:37] 2026-01-23 06:44:05,478 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:05,546 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:05,590 | INFO     | [data] copytool_in thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:05,880 | INFO     | [payload] validate_post thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:05,894 | INFO     | all job control threads have been joined
[2026-01-23 07:44:37] 2026-01-23 06:44:05,957 | INFO     | [payload] failed_post thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:06,123 | INFO     | [job] job monitor thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:06,310 | INFO     | [payload] control thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:06,350 | INFO     | [data] copytool_out thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:06,453 | INFO     | [data] control thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:06,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 07:44:37] 2026-01-23 06:44:06,766 | INFO     | [job] validate thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:06,899 | INFO     | [job] control thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:10,481 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:14,527 | INFO     | job.realtimelogging is not enabled
[2026-01-23 07:44:37] 2026-01-23 06:44:15,533 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 07:44:37] 2026-01-23 06:44:31,205 | INFO     | [monitor] cgroup control has ended
[2026-01-23 07:44:37] 2026-01-23 06:44:31,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671200147264)>', '<ExcThread(monitor, started 139670675494656)>']
[2026-01-23 07:44:37] 2026-01-23 06:44:32,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 07:44:37] 2026-01-23 06:44:32,490 | INFO     | [monitor] control thread has ended
[2026-01-23 07:44:37] 2026-01-23 06:44:36,989 | INFO     | all workflow threads have been joined
[2026-01-23 07:44:37] 2026-01-23 06:44:36,989 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 07:44:37] 2026-01-23 06:44:36,990 | INFO     | traces error code: 0
[2026-01-23 07:44:37] 2026-01-23 06:44:36,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 07:44:37] 2026-01-23 06:44:37,054 [wrapper] ==== pilot stdout END ====
[2026-01-23 07:44:37] 2026-01-23 06:44:37,057 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 07:44:37] 2026-01-23 06:44:37,061 [wrapper] pilotpid: 3437607
[2026-01-23 07:44:37] 2026-01-23 06:44:37,065 [wrapper] Pilot exit status: 0
[2026-01-23 07:44:37] 2026-01-23 06:44:37,075 [wrapper] pandaids: 6977477812
[2026-01-23 07:44:37] 2026-01-23 06:44:37,096 [wrapper] cleanup supervisor_pilot 3447151 3437608
[2026-01-23 07:44:37] 2026-01-23 06:44:37,099 [wrapper] Test setup, not cleaning
[2026-01-23 07:44:37] 2026-01-23 06:44:37,102 [wrapper] apfmon messages muted
[2026-01-23 07:44:37] 2026-01-23 06:44:37,106 [wrapper] ==== wrapper stdout END ====
[2026-01-23 07:44:37] 2026-01-23 06:44:37,109 [wrapper] ==== wrapper stderr END ====
[2026-01-23 07:44:37]  *** Error codes and diagnostics ***
[2026-01-23 07:44:37]     "exeErrorCode": 0,
[2026-01-23 07:44:37]     "exeErrorDiag": "",
[2026-01-23 07:44:37]     "pilotErrorCode": 0,
[2026-01-23 07:44:37]     "pilotErrorDiag": "",
[2026-01-23 07:44:37]  *** Listing of results directory ***
[2026-01-23 07:44:37] total 670044
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc    584422 Jan 22 03:30 pilot3.tar.gz
[2026-01-23 07:44:37] -rwx------ 1 boinc boinc     36322 Jan 22 03:32 runpilot2-wrapper.sh
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc      5111 Jan 22 03:34 queuedata.json
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc       100 Jan 23 06:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 07:44:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 06:35 run_atlas
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc       105 Jan 23 06:35 job.xml
[2026-01-23 07:44:37] -rw-r--r-- 2 boinc boinc 496498261 Jan 23 06:35 EVNT.48301084._000085.pool.root.1
[2026-01-23 07:44:37] -rw-r--r-- 2 boinc boinc    597770 Jan 23 06:35 input.tar.gz
[2026-01-23 07:44:37] -rw-r--r-- 2 boinc boinc     15845 Jan 23 06:35 start_atlas.sh
[2026-01-23 07:44:37] drwxrwx--x 2 boinc boinc      4096 Jan 23 06:35 shared
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc         0 Jan 23 06:35 boinc_setup_complete
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc      6371 Jan 23 06:35 init_data.xml
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc         0 Jan 23 06:35 boinc_lockfile
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc      2521 Jan 23 06:35 pandaJob.out
[2026-01-23 07:44:37] -rw------- 1 boinc boinc   1003905 Jan 23 06:35 agis_schedconf.cvmfs.json
[2026-01-23 07:44:37] -rw------- 1 boinc boinc   1516246 Jan 23 06:35 agis_ddmendpoints.agis.ALL.json
[2026-01-23 07:44:37] -rw------- 1 boinc boinc       428 Jan 23 06:35 workernode_map.json
[2026-01-23 07:44:37] drwx------ 5 boinc boinc      4096 Jan 23 06:35 pilot3
[2026-01-23 07:44:37] -rw------- 1 boinc boinc 183909031 Jan 23 07:43 HITS.48301086._004235.pool.root.1
[2026-01-23 07:44:37] -rw------- 1 boinc boinc        95 Jan 23 07:43 pilot_heartbeat.json
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc       530 Jan 23 07:43 boinc_task_state.xml
[2026-01-23 07:44:37] -rw------- 1 boinc boinc      1019 Jan 23 07:43 memory_monitor_summary.json
[2026-01-23 07:44:37] -rw------- 1 boinc boinc    282300 Jan 23 07:44 log.48301086._004235.job.log.tgz.1
[2026-01-23 07:44:37] -rw------- 1 boinc boinc      6318 Jan 23 07:44 heartbeat.json
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc        27 Jan 23 07:44 wrapper_checkpoint.txt
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc      8192 Jan 23 07:44 boinc_mmap_file
[2026-01-23 07:44:37] -rw------- 1 boinc boinc      4624 Jan 23 07:44 pilotlog.txt
[2026-01-23 07:44:37] -rw------- 1 boinc boinc    612990 Jan 23 07:44 log.48301086._004235.job.log.1
[2026-01-23 07:44:37] -rw------- 1 boinc boinc       357 Jan 23 07:44 output.list
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc       620 Jan 23 07:44 runtime_log
[2026-01-23 07:44:37] -rw------- 1 boinc boinc    911360 Jan 23 07:44 result.tar.gz
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc      8901 Jan 23 07:44 runtime_log.err
[2026-01-23 07:44:37] -rw------- 1 boinc boinc       658 Jan 23 07:44 9ASNDm8fz28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtCtKDm7r5BJn.diag
[2026-01-23 07:44:37] -rw-r--r-- 1 boinc boinc     12155 Jan 23 07:44 stderr.txt
[2026-01-23 07:44:37] HITS file was successfully produced:
[2026-01-23 07:44:37] -rw------- 1 boinc boinc 183909031 Jan 23 07:43 shared/HITS.pool.root.1
[2026-01-23 07:44:37]  *** Contents of shared directory: ***
[2026-01-23 07:44:37] total 665964
[2026-01-23 07:44:37] -rw-r--r-- 2 boinc boinc 496498261 Jan 23 06:35 ATLAS.root_0
[2026-01-23 07:44:37] -rw-r--r-- 2 boinc boinc    597770 Jan 23 06:35 input.tar.gz
[2026-01-23 07:44:37] -rw-r--r-- 2 boinc boinc     15845 Jan 23 06:35 start_atlas.sh
[2026-01-23 07:44:37] -rw------- 1 boinc boinc 183909031 Jan 23 07:43 HITS.pool.root.1
[2026-01-23 07:44:37] -rw------- 1 boinc boinc    911360 Jan 23 07:44 result.tar.gz
07:44:38 (3433498): run_atlas exited; CPU time 15370.763910
07:44:38 (3433498): called boinc_finish(0)

</stderr_txt>
]]>

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