Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:34:02 (676302): wrapper (7.7.26015): starting
09:34:02 (676302): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 09:34:02] Arguments: --nthreads 4
[2026-01-23 09:34:02] Threads: 4
[2026-01-23 09:34:02] Checking for CVMFS
[2026-01-23 09:34:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 09:34:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 09:34:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 09:34:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 09:34:03] 2.9.2.0 41542 3898 102860 155428 0 50 21985472 36864001 0 130560 0 1810024 99.988 104227 10185 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-23 09:34:03] CVMFS is ok
[2026-01-23 09:34:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 09:34:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 09:34:03] Further information can be found at the LHC@home message board.
[2026-01-23 09:34:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 09:34:03] Checking for apptainer binary...
[2026-01-23 09:34:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 09:34:03] Running /usr/bin/apptainer --version
[2026-01-23 09:34:03] apptainer version 1.4.1-1.1
[2026-01-23 09:34:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 09:34:04] thA332a
[2026-01-23 09:34:04] apptainer works
[2026-01-23 09:34:04] Set ATHENA_PROC_NUMBER=4
[2026-01-23 09:34:04] Set ATHENA_CORE_NUMBER=4
[2026-01-23 09:34:04] Starting ATLAS job with PandaID=6979399959
[2026-01-23 09:34:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 11:42:33]  *** The last 200 lines of the pilot log: ***
[2026-01-23 11:42:33] 2026-01-23 10:41:45,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 11:42:33] 2026-01-23 10:41:45,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 11:42:33] 2026-01-23 10:41:45,495 | INFO     | job 6979399959 has completed (purged errors)
[2026-01-23 11:42:33] 2026-01-23 10:41:45,495 | INFO     | overall cleanup function is called
[2026-01-23 11:42:33] 2026-01-23 10:41:46,502 | INFO     | --- collectZombieJob: --- 10, [684941]
[2026-01-23 11:42:33] 2026-01-23 10:41:46,502 | INFO     | zombie collector waiting for pid 684941
[2026-01-23 11:42:33] 2026-01-23 10:41:46,502 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 11:42:33] 2026-01-23 10:41:46,502 | INFO     | collected zombie processes
[2026-01-23 11:42:33] 2026-01-23 10:41:46,502 | INFO     | will attempt to kill all subprocesses of pid=684941
[2026-01-23 11:42:33] 2026-01-23 10:41:46,546 | INFO     | process IDs to be killed: [684941] (in reverse order)
[2026-01-23 11:42:33] 2026-01-23 10:41:46,579 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 11:42:33] 2026-01-23 10:41:46,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 11:42:33] 2026-01-23 10:41:46,581 | INFO     | did not find any defunct processes belonging to 684941
[2026-01-23 11:42:33] 2026-01-23 10:41:46,582 | INFO     | did not find any defunct processes belonging to 684941
[2026-01-23 11:42:33] 2026-01-23 10:41:46,582 | INFO     | ready for new job
[2026-01-23 11:42:33] 2026-01-23 10:41:46,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 11:42:33] 2026-01-23 10:41:46,583 | INFO     | **************************************
[2026-01-23 11:42:33] 2026-01-23 10:41:46,583 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 11:42:33] 2026-01-23 10:41:46,583 | INFO     | **************************************
[2026-01-23 11:42:33] 2026-01-23 10:41:46,583 | INFO     | 
[2026-01-23 11:42:33] 2026-01-23 10:41:46,584 | INFO     | architecture information:
[2026-01-23 11:42:33] 2026-01-23 10:41:46,584 | INFO     | executing command: cat /etc/os-release
[2026-01-23 11:42:33] 2026-01-23 10:41:46,598 | INFO     | cat /etc/os-release:
[2026-01-23 11:42:33] NAME="CentOS Linux"
[2026-01-23 11:42:33] VERSION="7 (Core)"
[2026-01-23 11:42:33] ID="centos"
[2026-01-23 11:42:33] ID_LIKE="rhel fedora"
[2026-01-23 11:42:33] VERSION_ID="7"
[2026-01-23 11:42:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 11:42:33] ANSI_COLOR="0;31"
[2026-01-23 11:42:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 11:42:33] HOME_URL="https://www.centos.org/"
[2026-01-23 11:42:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 11:42:33] 
[2026-01-23 11:42:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 11:42:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 11:42:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 11:42:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 11:42:33] 
[2026-01-23 11:42:33] 2026-01-23 10:41:46,598 | INFO     | **************************************
[2026-01-23 11:42:33] 2026-01-23 10:41:47,101 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 11:42:33] 2026-01-23 10:41:47,119 | INFO     | sufficient remaining disk space (334967603200 B)
[2026-01-23 11:42:33] 2026-01-23 10:41:47,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 11:42:33] 2026-01-23 10:41:47,120 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 11:42:33] 2026-01-23 10:41:47,120 | INFO     | update_server=False
[2026-01-23 11:42:33] 2026-01-23 10:41:47,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 11:42:33] 2026-01-23 10:41:47,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 11:42:33] 2026-01-23 10:41:47,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 11:42:33] 2026-01-23 10:41:47,301 | INFO     | all data control threads have been joined
[2026-01-23 11:42:33] 2026-01-23 10:41:47,380 | INFO     | all payload control threads have been joined
[2026-01-23 11:42:33] 2026-01-23 10:41:47,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-23 11:42:33] 2026-01-23 10:41:47,401 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-23 11:42:33] 2026-01-23 10:41:47,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 11:42:33] 2026-01-23 10:41:47,401 | INFO     | will abort loop
[2026-01-23 11:42:33] 2026-01-23 10:41:47,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 11:42:33] 2026-01-23 10:41:47,979 | INFO     | job.realtimelogging is not enabled
[2026-01-23 11:42:33] 2026-01-23 10:41:48,125 | INFO     | [job] retrieve thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,126 | INFO     | [job] queue monitor thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,178 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,306 | INFO     | [data] control thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,365 | INFO     | [data] copytool_in thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,386 | INFO     | [payload] control thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,406 | INFO     | [job] job monitor thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,729 | INFO     | all job control threads have been joined
[2026-01-23 11:42:33] 2026-01-23 10:41:48,789 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:48,985 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:49,224 | INFO     | [payload] validate_post thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:49,451 | INFO     | [payload] failed_post thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:49,484 | INFO     | [job] validate thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:49,602 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:49,735 | INFO     | [job] control thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:49,767 | INFO     | [data] copytool_out thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:41:51,127 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 11:42:33] 2026-01-23 10:42:17,247 | INFO     | PID=680410 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-23 11:42:33] 2026-01-23 10:42:17,247 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 11:42:33] 2026-01-23 10:42:17,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 11:42:33] 2026-01-23 10:42:17,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 11:42:33] 2026-01-23 10:42:26,175 | INFO     | [monitor] cgroup control has ended
[2026-01-23 11:42:33] 2026-01-23 10:42:27,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776948283200)>', '<ExcThread(monitor, started 139775994480384)>']
[2026-01-23 11:42:33] 2026-01-23 10:42:28,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 11:42:33] 2026-01-23 10:42:28,306 | INFO     | [monitor] control thread has ended
[2026-01-23 11:42:33] 2026-01-23 10:42:32,977 | INFO     | all workflow threads have been joined
[2026-01-23 11:42:33] 2026-01-23 10:42:32,978 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 11:42:33] 2026-01-23 10:42:32,978 | INFO     | traces error code: 0
[2026-01-23 11:42:33] 2026-01-23 10:42:32,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 11:42:33] 2026-01-23 10:42:33,054 [wrapper] ==== pilot stdout END ====
[2026-01-23 11:42:33] 2026-01-23 10:42:33,059 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 11:42:33] 2026-01-23 10:42:33,062 [wrapper] pilotpid: 680410
[2026-01-23 11:42:33] 2026-01-23 10:42:33,067 [wrapper] Pilot exit status: 0
[2026-01-23 11:42:33] 2026-01-23 10:42:33,079 [wrapper] pandaids: 6979399959
[2026-01-23 11:42:33] 2026-01-23 10:42:33,101 [wrapper] cleanup supervisor_pilot  690567 680411
[2026-01-23 11:42:33] 2026-01-23 10:42:33,105 [wrapper] Test setup, not cleaning
[2026-01-23 11:42:33] 2026-01-23 10:42:33,109 [wrapper] apfmon messages muted
[2026-01-23 11:42:33] 2026-01-23 10:42:33,113 [wrapper] ==== wrapper stdout END ====
[2026-01-23 11:42:33] 2026-01-23 10:42:33,116 [wrapper] ==== wrapper stderr END ====
[2026-01-23 11:42:33]  *** Error codes and diagnostics ***
[2026-01-23 11:42:33]     "exeErrorCode": 0,
[2026-01-23 11:42:33]     "exeErrorDiag": "",
[2026-01-23 11:42:33]     "pilotErrorCode": 0,
[2026-01-23 11:42:33]     "pilotErrorDiag": "",
[2026-01-23 11:42:33]  *** Listing of results directory ***
[2026-01-23 11:42:33] total 642244
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc    584422 Jan 22 08:50 pilot3.tar.gz
[2026-01-23 11:42:33] -rwx------ 1 boinc boinc     36322 Jan 22 08:54 runpilot2-wrapper.sh
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc      5111 Jan 22 08:55 queuedata.json
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc       100 Jan 23 09:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 11:42:33] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 09:34 run_atlas
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc       105 Jan 23 09:34 job.xml
[2026-01-23 11:42:33] -rw-r--r-- 2 boinc boinc 316134453 Jan 23 09:34 EVNT.48312993._000002.pool.root.1
[2026-01-23 11:42:33] drwxrwx--x 2 boinc boinc      4096 Jan 23 09:34 shared
[2026-01-23 11:42:33] -rw-r--r-- 2 boinc boinc    597775 Jan 23 09:34 input.tar.gz
[2026-01-23 11:42:33] -rw-r--r-- 2 boinc boinc     15845 Jan 23 09:34 start_atlas.sh
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc         0 Jan 23 09:34 boinc_setup_complete
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc      6370 Jan 23 09:34 init_data.xml
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc         0 Jan 23 09:34 boinc_lockfile
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc      2642 Jan 23 09:34 pandaJob.out
[2026-01-23 11:42:33] -rw------- 1 boinc boinc   1003905 Jan 23 09:34 agis_schedconf.cvmfs.json
[2026-01-23 11:42:33] -rw------- 1 boinc boinc   1516246 Jan 23 09:34 agis_ddmendpoints.agis.ALL.json
[2026-01-23 11:42:33] -rw------- 1 boinc boinc       421 Jan 23 09:34 workernode_map.json
[2026-01-23 11:42:33] drwx------ 5 boinc boinc      4096 Jan 23 09:34 pilot3
[2026-01-23 11:42:33] -rw------- 1 boinc boinc 334739641 Jan 23 11:41 HITS.48312995._000111.pool.root.1
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc       529 Jan 23 11:41 boinc_task_state.xml
[2026-01-23 11:42:33] -rw------- 1 boinc boinc      1022 Jan 23 11:41 memory_monitor_summary.json
[2026-01-23 11:42:33] -rw------- 1 boinc boinc    331742 Jan 23 11:41 log.48312995._000111.job.log.tgz.1
[2026-01-23 11:42:33] -rw------- 1 boinc boinc      6298 Jan 23 11:41 heartbeat.json
[2026-01-23 11:42:33] -rw------- 1 boinc boinc        95 Jan 23 11:42 pilot_heartbeat.json
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc      8192 Jan 23 11:42 boinc_mmap_file
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc        27 Jan 23 11:42 wrapper_checkpoint.txt
[2026-01-23 11:42:33] -rw------- 1 boinc boinc      5005 Jan 23 11:42 pilotlog.txt
[2026-01-23 11:42:33] -rw------- 1 boinc boinc   1097220 Jan 23 11:42 log.48312995._000111.job.log.1
[2026-01-23 11:42:33] -rw------- 1 boinc boinc       357 Jan 23 11:42 output.list
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc       620 Jan 23 11:42 runtime_log
[2026-01-23 11:42:33] -rw------- 1 boinc boinc   1443840 Jan 23 11:42 result.tar.gz
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc      8901 Jan 23 11:42 runtime_log.err
[2026-01-23 11:42:33] -rw------- 1 boinc boinc       658 Jan 23 11:42 jmgLDmqh428n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrUtKDmIKqFkm.diag
[2026-01-23 11:42:33] -rw-r--r-- 1 boinc boinc     11327 Jan 23 11:42 stderr.txt
[2026-01-23 11:42:33] HITS file was successfully produced:
[2026-01-23 11:42:33] -rw------- 1 boinc boinc 334739641 Jan 23 11:41 shared/HITS.pool.root.1
[2026-01-23 11:42:33]  *** Contents of shared directory: ***
[2026-01-23 11:42:33] total 637644
[2026-01-23 11:42:33] -rw-r--r-- 2 boinc boinc 316134453 Jan 23 09:34 ATLAS.root_0
[2026-01-23 11:42:33] -rw-r--r-- 2 boinc boinc    597775 Jan 23 09:34 input.tar.gz
[2026-01-23 11:42:33] -rw-r--r-- 2 boinc boinc     15845 Jan 23 09:34 start_atlas.sh
[2026-01-23 11:42:33] -rw------- 1 boinc boinc 334739641 Jan 23 11:41 HITS.pool.root.1
[2026-01-23 11:42:33] -rw------- 1 boinc boinc   1443840 Jan 23 11:42 result.tar.gz
11:42:34 (676302): run_atlas exited; CPU time 29396.128915
11:42:34 (676302): called boinc_finish(0)

</stderr_txt>
]]>

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