Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:39:07 (183979): wrapper (7.7.26015): starting
19:39:07 (183979): wrapper: running run_atlas (--nthreads 4)
[2026-01-22 19:39:07] Arguments: --nthreads 4
[2026-01-22 19:39:07] Threads: 4
[2026-01-22 19:39:07] Checking for CVMFS
[2026-01-22 19:39:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 19:39:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 19:39:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 19:39:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 19:39:09] 2.13.1.0 4908 361 57960 155402 2 188 8225462 10240000 1000 130560 0 477688 99.994 11025 45 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-01-22 19:39:09] CVMFS is ok
[2026-01-22 19:39:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 19:39:09] Checking for apptainer binary...
[2026-01-22 19:39:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 19:39:09] Running /usr/bin/apptainer --version
[2026-01-22 19:39:09] apptainer version 1.4.5
[2026-01-22 19:39:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 19:39:09] woolyvlneu
[2026-01-22 19:39:09] apptainer works
[2026-01-22 19:39:09] Set ATHENA_PROC_NUMBER=4
[2026-01-22 19:39:09] Set ATHENA_CORE_NUMBER=4
[2026-01-22 19:39:09] Starting ATLAS job with PandaID=6977571681
[2026-01-22 19:39:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 20:59:32]  *** The last 200 lines of the pilot log: ***
[2026-01-22 20:59:32]  lfn=log.48301086._007345.job.log.tgz.1
[2026-01-22 20:59:32]  mtime=0
[2026-01-22 20:59:32]  protocol_id=None
[2026-01-22 20:59:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-22 20:59:32]  replicas=None
[2026-01-22 20:59:32]  scope=mc23_13p6TeV
[2026-01-22 20:59:32]  status=None
[2026-01-22 20:59:32]  status_code=0
[2026-01-22 20:59:32]  storage_token=
[2026-01-22 20:59:32]  surl=/var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6977571681/log.48301086._007345.job.log.tgz.1
[2026-01-22 20:59:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/1c/log.48301086._007345.job.log.tgz.1
[2026-01-22 20:59:32]  workdir=None
[2026-01-22 20:59:32] ]
[2026-01-22 20:59:32] 2026-01-22 19:58:43,467 | INFO     | transferring file log.48301086._007345.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6977571681/log.48301086._007345.job.log.tgz.1 to /var/li
[2026-01-22 20:59:32] 2026-01-22 19:58:43,468 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6977571681/log.48301086._007345.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-01-22 20:59:32] 2026-01-22 19:58:43,484 | INFO     | adding to output.list: log.48301086._007345.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/1c/log.48301086._007345.job.log.tg
[2026-01-22 20:59:32] 2026-01-22 19:58:43,484 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-22 20:59:32] 2026-01-22 19:58:43,484 | INFO     | summary of transferred files:
[2026-01-22 20:59:32] 2026-01-22 19:58:43,484 | INFO     |  -- lfn=log.48301086._007345.job.log.tgz.1, status_code=0, status=transferred
[2026-01-22 20:59:32] 2026-01-22 19:58:43,485 | INFO     | stage-out finished correctly
[2026-01-22 20:59:32] 2026-01-22 19:58:44,231 | INFO     | time since job start (4762s) is within the limit (349056.0s)
[2026-01-22 20:59:32] 2026-01-22 19:58:45,050 | INFO     | monitor loop #335: job 0:6977571681 is in state 'finished'
[2026-01-22 20:59:32] 2026-01-22 19:58:45,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 20:59:32] 2026-01-22 19:58:45,360 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-22 20:59:32] 2026-01-22 19:58:46,237 | INFO     | time since job start (4764s) is within the limit (349056.0s)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,554 | INFO     | monitor loop #336: job 0:6977571681 is in state 'finished'
[2026-01-22 20:59:32] 2026-01-22 19:58:47,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,960 | INFO     | job 6977571681 has state=finished
[2026-01-22 20:59:32] 2026-01-22 19:58:47,960 | INFO     | preparing for final server update for job 6977571681 in state='finished'
[2026-01-22 20:59:32] 2026-01-22 19:58:47,960 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6977571681/jobReport.json
[2026-01-22 20:59:32] 2026-01-22 19:58:47,961 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/0/workernode_map.json
[2026-01-22 20:59:32] 2026-01-22 19:58:47,961 | INFO     | this job has now completed (state=finished)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,961 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,961 | INFO     | log transfer has been attempted: DONE
[2026-01-22 20:59:32] 2026-01-22 19:58:47,962 | INFO     | job 6977571681 has finished - writing final server update
[2026-01-22 20:59:32] 2026-01-22 19:58:47,962 | INFO     | total number of processed events: 400 (read)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,963 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-6977571681/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,964 | INFO     | extracted standard info from prmon json
[2026-01-22 20:59:32] 2026-01-22 19:58:47,964 | INFO     | extracted standard memory fields from prmon json
[2026-01-22 20:59:32] 2026-01-22 19:58:47,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-22 20:59:32] 2026-01-22 19:58:47,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-22 20:59:32] 2026-01-22 19:58:47,964 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-22 20:59:32] 2026-01-22 19:58:47,964 | INFO     | fitting pss+swap vs Time
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | sum of square deviations: 105711233.88235314
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | sum of deviations: -2470856294.9411764
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | mean x: 1769109565.1764705
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | mean y: 2454039.411764706
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | intersect: 41352983638.01327
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | chi2: 0.04191068122853619
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | current memory leak: -23.37 B/s (using 68 data points, chi2=0.04)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | could have reported an average CPU frequency of 3700 MHz (6 samples)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | ..............................
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . Timing measurements:
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . get job = 0 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . initial setup = 5 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . payload setup = 4 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . stage-in = 0 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . payload execution = 4742 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . stage-out = 0 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | . log creation = 0 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,965 | INFO     | ..............................
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | 
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | job summary report
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | --------------------------------------------------
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | PanDA job id: 6977571681
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | task id: 48301086
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | errors: (none)
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | pilot state: finished 
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | transexitcode: 0
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | exeerrorcode: 0
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | exeerrordiag: 
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | exitcode: 0
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | exitmsg: OK
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | cpuconsumptiontime: 16901 s
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | nevents: 400
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | neventsw: 0
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | pid: 199225
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | pgrp: 199225
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | corecount: 4
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | event service: False
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | sizes: {0: 2283821, 1: 2284282, 11: 2284282, 4750: 2310523, 4751: 2319549, 4753: 2319605, 4755: 2319927}
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | --------------------------------------------------
[2026-01-22 20:59:32] 2026-01-22 19:58:47,996 | INFO     | 
[2026-01-22 20:59:32] 2026-01-22 19:58:47,997 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/0
[2026-01-22 20:59:32] 2026-01-22 19:58:48,014 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | job 6977571681 has completed (purged errors)
[2026-01-22 20:59:32] 2026-01-22 19:58:48,015 | INFO     | overall cleanup function is called
[2026-01-22 20:59:32] 2026-01-22 19:58:49,023 | INFO     | --- collectZombieJob: --- 10, [199225]
[2026-01-22 20:59:32] 2026-01-22 19:58:49,023 | INFO     | zombie collector waiting for pid 199225
[2026-01-22 20:59:32] 2026-01-22 19:58:49,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 20:59:32] 2026-01-22 19:58:49,023 | INFO     | collected zombie processes
[2026-01-22 20:59:32] 2026-01-22 19:58:49,023 | INFO     | will attempt to kill all subprocesses of pid=199225
[2026-01-22 20:59:32] 2026-01-22 19:58:49,116 | INFO     | process IDs to be killed: [199225] (in reverse order)
[2026-01-22 20:59:32] 2026-01-22 19:58:49,158 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 20:59:32] 2026-01-22 19:58:49,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 20:59:32] 2026-01-22 19:58:49,161 | INFO     | did not find any defunct processes belonging to 199225
[2026-01-22 20:59:32] 2026-01-22 19:58:49,163 | INFO     | did not find any defunct processes belonging to 199225
[2026-01-22 20:59:32] 2026-01-22 19:58:49,164 | INFO     | ready for new job
[2026-01-22 20:59:32] 2026-01-22 19:58:49,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 20:59:32] 2026-01-22 19:58:49,165 | INFO     | **************************************
[2026-01-22 20:59:32] 2026-01-22 19:58:49,165 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 20:59:32] 2026-01-22 19:58:49,165 | INFO     | **************************************
[2026-01-22 20:59:32] 2026-01-22 19:58:49,165 | INFO     | 
[2026-01-22 20:59:32] 2026-01-22 19:58:49,165 | INFO     | pilot is running in a VM
[2026-01-22 20:59:32] 2026-01-22 19:58:49,165 | INFO     | architecture information:
[2026-01-22 20:59:32] 2026-01-22 19:58:49,166 | INFO     | executing command: cat /etc/os-release
[2026-01-22 20:59:32] 2026-01-22 19:58:49,176 | INFO     | cat /etc/os-release:
[2026-01-22 20:59:32] NAME="CentOS Linux"
[2026-01-22 20:59:32] VERSION="7 (Core)"
[2026-01-22 20:59:32] ID="centos"
[2026-01-22 20:59:32] ID_LIKE="rhel fedora"
[2026-01-22 20:59:32] VERSION_ID="7"
[2026-01-22 20:59:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 20:59:32] ANSI_COLOR="0;31"
[2026-01-22 20:59:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 20:59:32] HOME_URL="https://www.centos.org/"
[2026-01-22 20:59:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 20:59:32] 
[2026-01-22 20:59:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 20:59:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 20:59:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 20:59:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 20:59:32] 
[2026-01-22 20:59:32] 2026-01-22 19:58:49,176 | INFO     | **************************************
[2026-01-22 20:59:32] 2026-01-22 19:58:49,679 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2026-01-22 20:59:32] 2026-01-22 19:58:49,691 | INFO     | sufficient remaining disk space (42509271040 B)
[2026-01-22 20:59:32] 2026-01-22 19:58:49,691 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 20:59:32] 2026-01-22 19:58:49,691 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 20:59:32] 2026-01-22 19:58:49,691 | INFO     | update_server=False
[2026-01-22 20:59:32] 2026-01-22 19:58:49,691 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 20:59:32] 2026-01-22 19:58:49,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 20:59:32] 2026-01-22 19:58:49,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 20:59:32] 2026-01-22 19:58:50,058 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-22 20:59:32] 2026-01-22 19:58:50,059 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-22 20:59:32] 2026-01-22 19:58:50,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 20:59:32] 2026-01-22 19:58:50,059 | INFO     | will abort loop
[2026-01-22 20:59:32] 2026-01-22 19:58:50,226 | INFO     | all data control threads have been joined
[2026-01-22 20:59:32] 2026-01-22 19:58:50,252 | INFO     | all job control threads have been joined
[2026-01-22 20:59:32] 2026-01-22 19:58:50,696 | INFO     | [job] retrieve thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:50,697 | INFO     | [job] queue monitor thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:50,929 | INFO     | all payload control threads have been joined
[2026-01-22 20:59:32] 2026-01-22 19:58:51,064 | INFO     | [job] job monitor thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,232 | INFO     | [data] control thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,257 | INFO     | [job] control thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,342 | INFO     | [payload] failed_post thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,398 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 20:59:32] 2026-01-22 19:58:51,402 | INFO     | [job] validate thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,422 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,491 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,549 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,688 | INFO     | [data] copytool_in thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,697 | INFO     | [data] copytool_out thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,934 | INFO     | [payload] control thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:51,996 | INFO     | [payload] validate_post thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:58:55,405 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:59:00,632 | INFO     | job.realtimelogging is not enabled
[2026-01-22 20:59:32] 2026-01-22 19:59:01,638 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 20:59:32] 2026-01-22 19:59:19,414 | INFO     | PID=190287 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-22 20:59:32] 2026-01-22 19:59:19,414 | INFO     | .. there are 3 such processes running
[2026-01-22 20:59:32] 2026-01-22 19:59:19,415 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 20:59:32] 2026-01-22 19:59:19,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 20:59:32] 2026-01-22 19:59:19,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 20:59:32] 2026-01-22 19:59:26,729 | INFO     | [monitor] cgroup control has ended
[2026-01-22 20:59:32] 2026-01-22 19:59:27,425 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137456521144128)>', '<ExcThread(monitor, started 137455621613312)>']
[2026-01-22 20:59:32] 2026-01-22 19:59:27,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 20:59:32] 2026-01-22 19:59:27,457 | INFO     | [monitor] control thread has ended
[2026-01-22 20:59:32] 2026-01-22 19:59:32,435 | INFO     | all workflow threads have been joined
[2026-01-22 20:59:32] 2026-01-22 19:59:32,436 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 20:59:32] 2026-01-22 19:59:32,436 | INFO     | traces error code: 0
[2026-01-22 20:59:32] 2026-01-22 19:59:32,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 20:59:32] 2026-01-22 19:59:32,489 [wrapper] ==== pilot stdout END ====
[2026-01-22 20:59:32] 2026-01-22 19:59:32,492 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 20:59:32] 2026-01-22 19:59:32,495 [wrapper] pilotpid: 190287
[2026-01-22 20:59:32] 2026-01-22 19:59:32,498 [wrapper] Pilot exit status: 0
[2026-01-22 20:59:32] 2026-01-22 19:59:32,510 [wrapper] pandaids: 6977571681
[2026-01-22 20:59:32] 2026-01-22 19:59:32,545 [wrapper] cleanup supervisor_pilot  224621 190288
[2026-01-22 20:59:32] 2026-01-22 19:59:32,549 [wrapper] Test setup, not cleaning
[2026-01-22 20:59:32] 2026-01-22 19:59:32,552 [wrapper] apfmon messages muted
[2026-01-22 20:59:32] 2026-01-22 19:59:32,556 [wrapper] ==== wrapper stdout END ====
[2026-01-22 20:59:32] 2026-01-22 19:59:32,559 [wrapper] ==== wrapper stderr END ====
[2026-01-22 20:59:32]  *** Error codes and diagnostics ***
[2026-01-22 20:59:32]     "exeErrorCode": 0,
[2026-01-22 20:59:32]     "exeErrorDiag": "",
[2026-01-22 20:59:32]     "pilotErrorCode": 0,
[2026-01-22 20:59:32]     "pilotErrorDiag": "",
[2026-01-22 20:59:32]  *** Listing of results directory ***
[2026-01-22 20:59:32] insgesamt 662480
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc    584422 Jan 22 13:45 pilot3.tar.gz
[2026-01-22 20:59:32] -rwx------ 1 yeti boinc     36322 Jan 22 13:48 runpilot2-wrapper.sh
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc      5111 Jan 22 13:52 queuedata.json
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc       100 Jan 22 19:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 20:59:32] -rwxr-xr-x 1 yeti boinc      7986 Jan 22 19:39 run_atlas
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc       105 Jan 22 19:39 job.xml
[2026-01-22 20:59:32] -rw-r--r-- 2 yeti boinc     15845 Jan 22 19:39 start_atlas.sh
[2026-01-22 20:59:32] drwxrwx--x 2 yeti boinc      4096 Jan 22 19:39 shared
[2026-01-22 20:59:32] -rw-r--r-- 2 yeti boinc    597761 Jan 22 19:39 input.tar.gz
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc      6559 Jan 22 19:39 init_data.xml
[2026-01-22 20:59:32] -rw-r--r-- 2 yeti boinc 490432539 Jan 22 19:39 EVNT.48301084._000162.pool.root.1
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc         0 Jan 22 19:39 boinc_setup_complete
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc         0 Jan 22 19:39 boinc_lockfile
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc      2521 Jan 22 19:39 pandaJob.out
[2026-01-22 20:59:32] -rw------- 1 yeti boinc        52 Jan 22 19:39 setup.sh.local
[2026-01-22 20:59:32] -rw------- 1 yeti boinc   1002389 Jan 22 19:39 agis_schedconf.cvmfs.json
[2026-01-22 20:59:32] -rw------- 1 yeti boinc   1516246 Jan 22 19:39 agis_ddmendpoints.agis.ALL.json
[2026-01-22 20:59:32] -rw------- 1 yeti boinc       423 Jan 22 19:39 workernode_map.json
[2026-01-22 20:59:32] drwx------ 5 yeti boinc      4096 Jan 22 19:39 pilot3
[2026-01-22 20:59:32] -rw------- 1 yeti boinc 182070065 Jan 22 20:58 HITS.48301086._007345.pool.root.1
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc       530 Jan 22 20:58 boinc_task_state.xml
[2026-01-22 20:59:32] -rw------- 1 yeti boinc      1022 Jan 22 20:58 memory_monitor_summary.json
[2026-01-22 20:59:32] -rw------- 1 yeti boinc    299076 Jan 22 20:58 log.48301086._007345.job.log.tgz.1
[2026-01-22 20:59:32] -rw------- 1 yeti boinc      6279 Jan 22 20:58 heartbeat.json
[2026-01-22 20:59:32] -rw------- 1 yeti boinc        96 Jan 22 20:59 pilot_heartbeat.json
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc        27 Jan 22 20:59 wrapper_checkpoint.txt
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc      8192 Jan 22 20:59 boinc_mmap_file
[2026-01-22 20:59:32] -rw------- 1 yeti boinc      5152 Jan 22 20:59 pilotlog.txt
[2026-01-22 20:59:32] -rw------- 1 yeti boinc    669060 Jan 22 20:59 log.48301086._007345.job.log.1
[2026-01-22 20:59:32] -rw------- 1 yeti boinc       357 Jan 22 20:59 output.list
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc       620 Jan 22 20:59 runtime_log
[2026-01-22 20:59:32] -rw------- 1 yeti boinc    983040 Jan 22 20:59 result.tar.gz
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc      9551 Jan 22 20:59 runtime_log.err
[2026-01-22 20:59:32] -rw------- 1 yeti boinc       639 Jan 22 20:59 16BNDmFI928n9Rq4apOajLDm4fhM0noT9bVo0NGKDmh1tKDm2WyKEo.diag
[2026-01-22 20:59:32] -rw-r--r-- 1 yeti boinc     21369 Jan 22 20:59 stderr.txt
[2026-01-22 20:59:32] HITS file was successfully produced:
[2026-01-22 20:59:32] -rw------- 1 yeti boinc 182070065 Jan 22 20:58 shared/HITS.pool.root.1
[2026-01-22 20:59:32]  *** Contents of shared directory: ***
[2026-01-22 20:59:32] insgesamt 658312
[2026-01-22 20:59:32] -rw-r--r-- 2 yeti boinc     15845 Jan 22 19:39 start_atlas.sh
[2026-01-22 20:59:32] -rw-r--r-- 2 yeti boinc    597761 Jan 22 19:39 input.tar.gz
[2026-01-22 20:59:32] -rw-r--r-- 2 yeti boinc 490432539 Jan 22 19:39 ATLAS.root_0
[2026-01-22 20:59:32] -rw------- 1 yeti boinc 182070065 Jan 22 20:58 HITS.pool.root.1
[2026-01-22 20:59:32] -rw------- 1 yeti boinc    983040 Jan 22 20:59 result.tar.gz
20:59:34 (183979): run_atlas exited; CPU time 16951.303898
20:59:34 (183979): called boinc_finish(0)

</stderr_txt>
]]>

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