Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
00:06:07 (740641): wrapper (7.7.26015): starting
00:06:07 (740641): wrapper: running run_atlas (--nthreads 4)
[2026-01-24 00:06:07] Arguments: --nthreads 4
[2026-01-24 00:06:07] Threads: 4
[2026-01-24 00:06:07] Checking for CVMFS
[2026-01-24 00:06:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-24 00:06:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-24 00:06:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-24 00:06:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-24 00:06:07] 2.13.3.0 80730 5686 48012 155449 1 50 19550640 33554433 0 130560 0 2674398 99.989 160001 195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-24 00:06:07] CVMFS is ok
[2026-01-24 00:06:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-24 00:06:07] Checking for apptainer binary...
[2026-01-24 00:06:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-24 00:06:07] Running /usr/bin/apptainer --version
[2026-01-24 00:06:07] apptainer version 1.4.5
[2026-01-24 00:06:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-24 00:06:07] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-24 00:06:07] apptainer works
[2026-01-24 00:06:07] Set ATHENA_PROC_NUMBER=4
[2026-01-24 00:06:07] Set ATHENA_CORE_NUMBER=4
[2026-01-24 00:06:07] Starting ATLAS job with PandaID=6977522478
[2026-01-24 00:06:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-24 01:04:29]  *** The last 200 lines of the pilot log: ***
[2026-01-24 01:04:29]  domain=
[2026-01-24 01:04:29]  filesize=258520
[2026-01-24 01:04:29]  filetype=log
[2026-01-24 01:04:29]  guid=db9e3791-8f80-4c6b-bdbd-6be8e7995db9
[2026-01-24 01:04:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-24 01:04:29]  is_altstaged=None
[2026-01-24 01:04:29]  is_tar=False
[2026-01-24 01:04:29]  lfn=log.48301086._006271.job.log.tgz.1
[2026-01-24 01:04:29]  mtime=0
[2026-01-24 01:04:29]  protocol_id=None
[2026-01-24 01:04:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-24 01:04:29]  replicas=None
[2026-01-24 01:04:29]  scope=mc23_13p6TeV
[2026-01-24 01:04:29]  status=None
[2026-01-24 01:04:29]  status_code=0
[2026-01-24 01:04:29]  storage_token=
[2026-01-24 01:04:29]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6977522478/log.48301086._006271.job.log.tgz.1
[2026-01-24 01:04:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/0d/log.48301086._006271.job.log.tgz.1
[2026-01-24 01:04:29]  workdir=None
[2026-01-24 01:04:29] ]
[2026-01-24 01:04:29] 2026-01-23 23:03:23,894 | INFO     | transferring file log.48301086._006271.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6977522478/log.48301086._006271.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-24 01:04:29] 2026-01-23 23:03:23,894 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6977522478/log.48301086._006271.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48301086._006271.job
[2026-01-24 01:04:29] 2026-01-23 23:03:23,903 | INFO     | adding to output.list: log.48301086._006271.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/0d/log.48301086._006271.job.log.tg
[2026-01-24 01:04:29] 2026-01-23 23:03:23,903 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-24 01:04:29] 2026-01-23 23:03:23,903 | INFO     | summary of transferred files:
[2026-01-24 01:04:29] 2026-01-23 23:03:23,903 | INFO     |  -- lfn=log.48301086._006271.job.log.tgz.1, status_code=0, status=transferred
[2026-01-24 01:04:29] 2026-01-23 23:03:23,903 | INFO     | stage-out finished correctly
[2026-01-24 01:04:29] 2026-01-23 23:03:24,550 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-24 01:04:29] 2026-01-23 23:03:24,910 | INFO     | monitor loop #263: job 0:6977522478 is in state 'finished'
[2026-01-24 01:04:29] 2026-01-23 23:03:24,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-24 01:04:29] 2026-01-23 23:03:25,042 | INFO     | time since job start (3429s) is within the limit (349056.0s)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,573 | INFO     | job 6977522478 has state=finished
[2026-01-24 01:04:29] 2026-01-23 23:03:26,573 | INFO     | preparing for final server update for job 6977522478 in state='finished'
[2026-01-24 01:04:29] 2026-01-23 23:03:26,574 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6977522478/jobReport.json
[2026-01-24 01:04:29] 2026-01-23 23:03:26,575 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-24 01:04:29] 2026-01-23 23:03:26,575 | INFO     | this job has now completed (state=finished)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,575 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,575 | INFO     | log transfer has been attempted: DONE
[2026-01-24 01:04:29] 2026-01-23 23:03:26,575 | INFO     | job 6977522478 has finished - writing final server update
[2026-01-24 01:04:29] 2026-01-23 23:03:26,575 | INFO     | total number of processed events: 400 (read)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,577 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6977522478/memory_monitor_summary.json (trf name=prmon)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,577 | INFO     | extracted standard info from prmon json
[2026-01-24 01:04:29] 2026-01-23 23:03:26,577 | INFO     | extracted standard memory fields from prmon json
[2026-01-24 01:04:29] 2026-01-23 23:03:26,577 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-24 01:04:29] 2026-01-23 23:03:26,577 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-24 01:04:29] 2026-01-23 23:03:26,577 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | fitting pss+swap vs Time
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | sum of square deviations: 36465800.0
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | sum of deviations: -164032720.99999997
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | mean x: 1769207761.0
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | mean y: 2388401.326530612
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | intersect: 7960748372.892975
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | chi2: 0.026281958253319908
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | current memory leak: -4.50 B/s (using 49 data points, chi2=0.03)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | could have reported an average CPU frequency of 4218 MHz (5 samples)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | ..............................
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | . Timing measurements:
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | . get job = 0 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | . initial setup = 4 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | . payload setup = 2 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | . stage-in = 0 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,578 | INFO     | . payload execution = 3411 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,579 | INFO     | . stage-out = 0 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,579 | INFO     | . log creation = 0 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,579 | INFO     | ..............................
[2026-01-24 01:04:29] 2026-01-23 23:03:26,606 | INFO     | 
[2026-01-24 01:04:29] 2026-01-23 23:03:26,606 | INFO     | job summary report
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | --------------------------------------------------
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | PanDA job id: 6977522478
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | task id: 48301086
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | errors: (none)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | pilot state: finished 
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | transexitcode: 0
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | exeerrorcode: 0
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | exeerrordiag: 
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | exitcode: 0
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | exitmsg: OK
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | cpuconsumptiontime: 12824 s
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | nevents: 400
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | neventsw: 0
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | pid: 749172
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | pgrp: 749172
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | corecount: 4
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | event service: False
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | sizes: {0: 2284237, 11: 2284237, 3417: 2318992, 3420: 2319162}
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | --------------------------------------------------
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | 
[2026-01-24 01:04:29] 2026-01-23 23:03:26,607 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-24 01:04:29] 2026-01-23 23:03:26,615 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | job 6977522478 has completed (purged errors)
[2026-01-24 01:04:29] 2026-01-23 23:03:26,616 | INFO     | overall cleanup function is called
[2026-01-24 01:04:29] 2026-01-23 23:03:27,622 | INFO     | --- collectZombieJob: --- 10, [749172]
[2026-01-24 01:04:29] 2026-01-23 23:03:27,623 | INFO     | zombie collector waiting for pid 749172
[2026-01-24 01:04:29] 2026-01-23 23:03:27,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-24 01:04:29] 2026-01-23 23:03:27,623 | INFO     | collected zombie processes
[2026-01-24 01:04:29] 2026-01-23 23:03:27,623 | INFO     | will attempt to kill all subprocesses of pid=749172
[2026-01-24 01:04:29] 2026-01-23 23:03:27,719 | INFO     | process IDs to be killed: [749172] (in reverse order)
[2026-01-24 01:04:29] 2026-01-23 23:03:27,752 | WARNING  | found no corresponding commands to process id(s)
[2026-01-24 01:04:29] 2026-01-23 23:03:27,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-24 01:04:29] 2026-01-23 23:03:27,755 | INFO     | did not find any defunct processes belonging to 749172
[2026-01-24 01:04:29] 2026-01-23 23:03:27,757 | INFO     | did not find any defunct processes belonging to 749172
[2026-01-24 01:04:29] 2026-01-23 23:03:27,757 | INFO     | ready for new job
[2026-01-24 01:04:29] 2026-01-23 23:03:27,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-24 01:04:29] 2026-01-23 23:03:27,758 | INFO     | **************************************
[2026-01-24 01:04:29] 2026-01-23 23:03:27,758 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-24 01:04:29] 2026-01-23 23:03:27,758 | INFO     | **************************************
[2026-01-24 01:04:29] 2026-01-23 23:03:27,758 | INFO     | 
[2026-01-24 01:04:29] 2026-01-23 23:03:27,759 | INFO     | architecture information:
[2026-01-24 01:04:29] 2026-01-23 23:03:27,759 | INFO     | executing command: cat /etc/os-release
[2026-01-24 01:04:29] 2026-01-23 23:03:27,765 | INFO     | cat /etc/os-release:
[2026-01-24 01:04:29] NAME="CentOS Linux"
[2026-01-24 01:04:29] VERSION="7 (Core)"
[2026-01-24 01:04:29] ID="centos"
[2026-01-24 01:04:29] ID_LIKE="rhel fedora"
[2026-01-24 01:04:29] VERSION_ID="7"
[2026-01-24 01:04:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-24 01:04:29] ANSI_COLOR="0;31"
[2026-01-24 01:04:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-24 01:04:29] HOME_URL="https://www.centos.org/"
[2026-01-24 01:04:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-24 01:04:29] 
[2026-01-24 01:04:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-24 01:04:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-24 01:04:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-24 01:04:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-24 01:04:29] 
[2026-01-24 01:04:29] 2026-01-23 23:03:27,765 | INFO     | **************************************
[2026-01-24 01:04:29] 2026-01-23 23:03:28,268 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-24 01:04:29] 2026-01-23 23:03:28,274 | INFO     | sufficient remaining disk space (64982351872 B)
[2026-01-24 01:04:29] 2026-01-23 23:03:28,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-24 01:04:29] 2026-01-23 23:03:28,274 | INFO     | current server update state: UPDATING_FINAL
[2026-01-24 01:04:29] 2026-01-23 23:03:28,274 | INFO     | update_server=False
[2026-01-24 01:04:29] 2026-01-23 23:03:28,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-24 01:04:29] 2026-01-23 23:03:28,275 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-24 01:04:29] 2026-01-23 23:03:28,303 | INFO     | all job control threads have been joined
[2026-01-24 01:04:29] 2026-01-23 23:03:28,418 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-24 01:04:29] 2026-01-23 23:03:28,418 | INFO     | aborting loop
[2026-01-24 01:04:29] 2026-01-23 23:03:28,715 | INFO     | all payload control threads have been joined
[2026-01-24 01:04:29] 2026-01-23 23:03:29,054 | INFO     | all data control threads have been joined
[2026-01-24 01:04:29] 2026-01-23 23:03:29,280 | INFO     | [job] retrieve thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:29,280 | INFO     | [job] queue monitor thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:29,308 | INFO     | [job] control thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:29,424 | INFO     | [job] job monitor thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:29,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-24 01:04:29] 2026-01-23 23:03:29,455 | INFO     | [payload] validate_post thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:29,720 | INFO     | [payload] control thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:30,059 | INFO     | [data] control thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:30,071 | INFO     | [payload] failed_post thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:30,304 | INFO     | [job] validate thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:30,407 | INFO     | [job] create_data_payload thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:30,468 | INFO     | [payload] validate_pre thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:30,559 | INFO     | [data] copytool_in thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:30,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-24 01:04:29] 2026-01-23 23:03:30,628 | INFO     | [payload] execute_payloads thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:31,446 | INFO     | [data] copytool_out thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:34,590 | INFO     | [data] queue_monitor thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:38,806 | INFO     | job.realtimelogging is not enabled
[2026-01-24 01:04:29] 2026-01-23 23:03:39,811 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-24 01:04:29] 2026-01-23 23:03:58,209 | INFO     | PID=744460 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-24 01:04:29] 2026-01-23 23:03:58,209 | INFO     | found 0 job(s) in 20 queues
[2026-01-24 01:04:29] 2026-01-23 23:03:58,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-24 01:04:29] 2026-01-23 23:03:58,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-24 01:04:29] 2026-01-23 23:04:21,120 | INFO     | [monitor] cgroup control has ended
[2026-01-24 01:04:29] 2026-01-23 23:04:21,563 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762626299712)>', '<ExcThread(monitor, started 139762343360256)>']
[2026-01-24 01:04:29] 2026-01-23 23:04:22,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-24 01:04:29] 2026-01-23 23:04:22,330 | INFO     | [monitor] control thread has ended
[2026-01-24 01:04:29] 2026-01-23 23:04:26,589 | INFO     | all workflow threads have been joined
[2026-01-24 01:04:29] 2026-01-23 23:04:26,589 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-24 01:04:29] 2026-01-23 23:04:26,589 | INFO     | traces error code: 0
[2026-01-24 01:04:29] 2026-01-23 23:04:26,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-24 01:04:29] 2026-01-23 23:04:29,373 [wrapper] ==== pilot stdout END ====
[2026-01-24 01:04:29] 2026-01-23 23:04:29,375 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-24 01:04:29] 2026-01-23 23:04:29,376 [wrapper] pilotpid: 744460
[2026-01-24 01:04:29] 2026-01-23 23:04:29,378 [wrapper] Pilot exit status: 0
[2026-01-24 01:04:29] 2026-01-23 23:04:29,383 [wrapper] pandaids: 6977522478
[2026-01-24 01:04:29] 2026-01-23 23:04:29,407 [wrapper] cleanup supervisor_pilot  787042 744461
[2026-01-24 01:04:29] 2026-01-23 23:04:29,409 [wrapper] Test setup, not cleaning
[2026-01-24 01:04:29] 2026-01-23 23:04:29,410 [wrapper] apfmon messages muted
[2026-01-24 01:04:29] 2026-01-23 23:04:29,411 [wrapper] ==== wrapper stdout END ====
[2026-01-24 01:04:29] 2026-01-23 23:04:29,413 [wrapper] ==== wrapper stderr END ====
[2026-01-24 01:04:29]  *** Error codes and diagnostics ***
[2026-01-24 01:04:29]     "exeErrorCode": 0,
[2026-01-24 01:04:29]     "exeErrorDiag": "",
[2026-01-24 01:04:29]     "pilotErrorCode": 0,
[2026-01-24 01:04:29]     "pilotErrorDiag": "",
[2026-01-24 01:04:29]  *** Listing of results directory ***
[2026-01-24 01:04:29] total 660104
[2026-01-24 01:04:29] -rw-r--r-- 1 ek ek    584422 Jan 22 12:24 pilot3.tar.gz
[2026-01-24 01:04:29] -rwx------ 1 ek ek     36322 Jan 22 12:25 runpilot2-wrapper.sh
[2026-01-24 01:04:29] -rw-r--r-- 1 ek ek      5111 Jan 22 12:25 queuedata.json
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek       100 Jan 24 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-24 01:04:29] -rwxr-xr-x 1 ek ek      7986 Jan 24 00:06 run_atlas
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek       105 Jan 24 00:06 job.xml
[2026-01-24 01:04:29] -rw-r--r-- 2 ek ek 490167950 Jan 24 00:06 EVNT.48301084._000126.pool.root.1
[2026-01-24 01:04:29] -rw-r--r-- 2 ek ek    597758 Jan 24 00:06 input.tar.gz
[2026-01-24 01:04:29] -rw-r--r-- 2 ek ek     15845 Jan 24 00:06 start_atlas.sh
[2026-01-24 01:04:29] drwxrwx--x 2 ek ek      4096 Jan 24 00:06 shared
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek         0 Jan 24 00:06 boinc_setup_complete
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek      9841 Jan 24 00:06 init_data.xml
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek         0 Jan 24 00:06 boinc_lockfile
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek      2519 Jan 24 00:06 pandaJob.out
[2026-01-24 01:04:29] -rw------- 1 ek ek        50 Jan 24 00:06 setup.sh.local
[2026-01-24 01:04:29] -rw------- 1 ek ek   1004254 Jan 24 00:06 agis_schedconf.cvmfs.json
[2026-01-24 01:04:29] -rw------- 1 ek ek   1516246 Jan 24 00:06 agis_ddmendpoints.agis.ALL.json
[2026-01-24 01:04:29] -rw------- 1 ek ek       432 Jan 24 00:06 workernode_map.json
[2026-01-24 01:04:29] drwx------ 5 ek ek      4096 Jan 24 00:06 pilot3
[2026-01-24 01:04:29] -rw------- 1 ek ek 180282739 Jan 24 01:03 HITS.48301086._006271.pool.root.1
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek       530 Jan 24 01:03 boinc_task_state.xml
[2026-01-24 01:04:29] -rw------- 1 ek ek      1042 Jan 24 01:03 memory_monitor_summary.json
[2026-01-24 01:04:29] -rw------- 1 ek ek    258520 Jan 24 01:03 log.48301086._006271.job.log.tgz.1
[2026-01-24 01:04:29] -rw------- 1 ek ek      6344 Jan 24 01:03 heartbeat.json
[2026-01-24 01:04:29] -rw------- 1 ek ek        95 Jan 24 01:03 pilot_heartbeat.json
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek      8192 Jan 24 01:04 boinc_mmap_file
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek        27 Jan 24 01:04 wrapper_checkpoint.txt
[2026-01-24 01:04:29] -rw------- 1 ek ek      4815 Jan 24 01:04 pilotlog.txt
[2026-01-24 01:04:29] -rw------- 1 ek ek    516072 Jan 24 01:04 log.48301086._006271.job.log.1
[2026-01-24 01:04:29] -rw------- 1 ek ek       357 Jan 24 01:04 output.list
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek       620 Jan 24 01:04 runtime_log
[2026-01-24 01:04:29] -rw------- 1 ek ek    788480 Jan 24 01:04 result.tar.gz
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek      9501 Jan 24 01:04 runtime_log.err
[2026-01-24 01:04:29] -rw------- 1 ek ek       664 Jan 24 01:04 Cm9LDmi3628nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkJ0KDmn687in.diag
[2026-01-24 01:04:29] -rw-rw-r-- 1 ek ek     20908 Jan 24 01:04 stderr.txt
[2026-01-24 01:04:29] HITS file was successfully produced:
[2026-01-24 01:04:29] -rw------- 1 ek ek 180282739 Jan 24 01:03 shared/HITS.pool.root.1
[2026-01-24 01:04:29]  *** Contents of shared directory: ***
[2026-01-24 01:04:29] total 656120
[2026-01-24 01:04:29] -rw-r--r-- 2 ek ek 490167950 Jan 24 00:06 ATLAS.root_0
[2026-01-24 01:04:29] -rw-r--r-- 2 ek ek    597758 Jan 24 00:06 input.tar.gz
[2026-01-24 01:04:29] -rw-r--r-- 2 ek ek     15845 Jan 24 00:06 start_atlas.sh
[2026-01-24 01:04:29] -rw------- 1 ek ek 180282739 Jan 24 01:03 HITS.pool.root.1
[2026-01-24 01:04:29] -rw------- 1 ek ek    788480 Jan 24 01:04 result.tar.gz
01:04:31 (740641): run_atlas exited; CPU time 12856.781428
01:04:31 (740641): called boinc_finish(0)

</stderr_txt>
]]>

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