Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
22:09:20 (637339): wrapper (7.7.26015): starting
22:09:20 (637339): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 22:09:20] Arguments: --nthreads 4
[2026-01-23 22:09:20] Threads: 4
[2026-01-23 22:09:20] Checking for CVMFS
[2026-01-23 22:09:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 22:09:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 22:09:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 22:09:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 22:09:20] 2.13.3.0 80730 5569 47980 155447 2 50 19541067 33554433 0 130560 0 2595479 99.989 157242 195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-23 22:09:20] CVMFS is ok
[2026-01-23 22:09:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 22:09:20] Checking for apptainer binary...
[2026-01-23 22:09:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 22:09:20] Running /usr/bin/apptainer --version
[2026-01-23 22:09:20] apptainer version 1.4.5
[2026-01-23 22:09:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 22:09:20] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-23 22:09:20] apptainer works
[2026-01-23 22:09:20] Set ATHENA_PROC_NUMBER=4
[2026-01-23 22:09:20] Set ATHENA_CORE_NUMBER=4
[2026-01-23 22:09:20] Starting ATLAS job with PandaID=6977522471
[2026-01-23 22:09:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 23:07:38]  *** The last 200 lines of the pilot log: ***
[2026-01-23 23:07:38]  domain=
[2026-01-23 23:07:38]  filesize=248549
[2026-01-23 23:07:38]  filetype=log
[2026-01-23 23:07:38]  guid=dbbcbe85-e9a0-45e5-96fc-9d40b4df2dfb
[2026-01-23 23:07:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-23 23:07:38]  is_altstaged=None
[2026-01-23 23:07:38]  is_tar=False
[2026-01-23 23:07:38]  lfn=log.48301086._006264.job.log.tgz.1
[2026-01-23 23:07:38]  mtime=0
[2026-01-23 23:07:38]  protocol_id=None
[2026-01-23 23:07:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-23 23:07:38]  replicas=None
[2026-01-23 23:07:38]  scope=mc23_13p6TeV
[2026-01-23 23:07:38]  status=None
[2026-01-23 23:07:38]  status_code=0
[2026-01-23 23:07:38]  storage_token=
[2026-01-23 23:07:38]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6977522471/log.48301086._006264.job.log.tgz.1
[2026-01-23 23:07:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/7b/log.48301086._006264.job.log.tgz.1
[2026-01-23 23:07:38]  workdir=None
[2026-01-23 23:07:38] ]
[2026-01-23 23:07:38] 2026-01-23 21:06:53,181 | INFO     | transferring file log.48301086._006264.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6977522471/log.48301086._006264.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-23 23:07:38] 2026-01-23 21:06:53,181 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6977522471/log.48301086._006264.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48301086._006264.job
[2026-01-23 23:07:38] 2026-01-23 21:06:53,190 | INFO     | adding to output.list: log.48301086._006264.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/7b/log.48301086._006264.job.log.tg
[2026-01-23 23:07:38] 2026-01-23 21:06:53,191 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-23 23:07:38] 2026-01-23 21:06:53,191 | INFO     | summary of transferred files:
[2026-01-23 23:07:38] 2026-01-23 21:06:53,191 | INFO     |  -- lfn=log.48301086._006264.job.log.tgz.1, status_code=0, status=transferred
[2026-01-23 23:07:38] 2026-01-23 21:06:53,191 | INFO     | stage-out finished correctly
[2026-01-23 23:07:38] 2026-01-23 21:06:54,043 | INFO     | time since job start (3446s) is within the limit (349056.0s)
[2026-01-23 23:07:38] 2026-01-23 21:06:54,137 | INFO     | monitor loop #264: job 0:6977522471 is in state 'finished'
[2026-01-23 23:07:38] 2026-01-23 21:06:54,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,018 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-23 23:07:38] 2026-01-23 21:06:55,046 | INFO     | job 6977522471 has state=finished
[2026-01-23 23:07:38] 2026-01-23 21:06:55,046 | INFO     | preparing for final server update for job 6977522471 in state='finished'
[2026-01-23 23:07:38] 2026-01-23 21:06:55,046 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6977522471/jobReport.json
[2026-01-23 23:07:38] 2026-01-23 21:06:55,047 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-23 23:07:38] 2026-01-23 21:06:55,047 | INFO     | this job has now completed (state=finished)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,047 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,047 | INFO     | log transfer has been attempted: DONE
[2026-01-23 23:07:38] 2026-01-23 21:06:55,047 | INFO     | job 6977522471 has finished - writing final server update
[2026-01-23 23:07:38] 2026-01-23 21:06:55,047 | INFO     | total number of processed events: 400 (read)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,049 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6977522471/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,049 | INFO     | extracted standard info from prmon json
[2026-01-23 23:07:38] 2026-01-23 21:06:55,049 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 23:07:38] 2026-01-23 21:06:55,049 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 23:07:38] 2026-01-23 21:06:55,049 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 23:07:38] 2026-01-23 21:06:55,049 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | fitting pss+swap vs Time
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | sum of square deviations: 38744912.5
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | sum of deviations: -268710856.0
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | mean x: 1769200783.5
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | mean y: 2393244.28
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | intersect: 12272480496.900732
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | chi2: 0.02523766800467009
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | current memory leak: -6.94 B/s (using 50 data points, chi2=0.03)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | could have reported an average CPU frequency of 4179 MHz (5 samples)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | ..............................
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . Timing measurements:
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . get job = 0 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . initial setup = 4 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . payload setup = 2 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . stage-in = 0 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . payload execution = 3426 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . stage-out = 0 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | . log creation = 0 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,050 | INFO     | ..............................
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | 
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | job summary report
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | --------------------------------------------------
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | PanDA job id: 6977522471
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | task id: 48301086
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | errors: (none)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | pilot state: finished 
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | transexitcode: 0
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | exeerrorcode: 0
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | exeerrordiag: 
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | exitcode: 0
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | exitmsg: OK
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | cpuconsumptiontime: 12915 s
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | nevents: 400
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | neventsw: 0
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | pid: 645837
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | pgrp: 645837
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | corecount: 4
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | event service: False
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | sizes: {0: 2283804, 1: 2284265, 11: 2284265, 3433: 2310042, 3434: 2319040, 3436: 2319450}
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | --------------------------------------------------
[2026-01-23 23:07:38] 2026-01-23 21:06:55,184 | INFO     | 
[2026-01-23 23:07:38] 2026-01-23 21:06:55,185 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,196 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,196 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 23:07:38] 2026-01-23 21:06:55,196 | INFO     | job 6977522471 has completed (purged errors)
[2026-01-23 23:07:38] 2026-01-23 21:06:55,196 | INFO     | overall cleanup function is called
[2026-01-23 23:07:38] 2026-01-23 21:06:56,202 | INFO     | --- collectZombieJob: --- 10, [645837]
[2026-01-23 23:07:38] 2026-01-23 21:06:56,202 | INFO     | zombie collector waiting for pid 645837
[2026-01-23 23:07:38] 2026-01-23 21:06:56,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 23:07:38] 2026-01-23 21:06:56,203 | INFO     | collected zombie processes
[2026-01-23 23:07:38] 2026-01-23 21:06:56,203 | INFO     | will attempt to kill all subprocesses of pid=645837
[2026-01-23 23:07:38] 2026-01-23 21:06:56,300 | INFO     | process IDs to be killed: [645837] (in reverse order)
[2026-01-23 23:07:38] 2026-01-23 21:06:56,333 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 23:07:38] 2026-01-23 21:06:56,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 23:07:38] 2026-01-23 21:06:56,336 | INFO     | did not find any defunct processes belonging to 645837
[2026-01-23 23:07:38] 2026-01-23 21:06:56,340 | INFO     | did not find any defunct processes belonging to 645837
[2026-01-23 23:07:38] 2026-01-23 21:06:56,340 | INFO     | ready for new job
[2026-01-23 23:07:38] 2026-01-23 21:06:56,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 23:07:38] 2026-01-23 21:06:56,340 | INFO     | **************************************
[2026-01-23 23:07:38] 2026-01-23 21:06:56,341 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 23:07:38] 2026-01-23 21:06:56,341 | INFO     | **************************************
[2026-01-23 23:07:38] 2026-01-23 21:06:56,341 | INFO     | 
[2026-01-23 23:07:38] 2026-01-23 21:06:56,341 | INFO     | architecture information:
[2026-01-23 23:07:38] 2026-01-23 21:06:56,341 | INFO     | executing command: cat /etc/os-release
[2026-01-23 23:07:38] 2026-01-23 21:06:56,348 | INFO     | cat /etc/os-release:
[2026-01-23 23:07:38] NAME="CentOS Linux"
[2026-01-23 23:07:38] VERSION="7 (Core)"
[2026-01-23 23:07:38] ID="centos"
[2026-01-23 23:07:38] ID_LIKE="rhel fedora"
[2026-01-23 23:07:38] VERSION_ID="7"
[2026-01-23 23:07:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 23:07:38] ANSI_COLOR="0;31"
[2026-01-23 23:07:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 23:07:38] HOME_URL="https://www.centos.org/"
[2026-01-23 23:07:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 23:07:38] 
[2026-01-23 23:07:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 23:07:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 23:07:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 23:07:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 23:07:38] 
[2026-01-23 23:07:38] 2026-01-23 21:06:56,348 | INFO     | **************************************
[2026-01-23 23:07:38] 2026-01-23 21:06:56,851 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-23 23:07:38] 2026-01-23 21:06:56,860 | INFO     | sufficient remaining disk space (67046998016 B)
[2026-01-23 23:07:38] 2026-01-23 21:06:56,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 23:07:38] 2026-01-23 21:06:56,860 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 23:07:38] 2026-01-23 21:06:56,860 | INFO     | update_server=False
[2026-01-23 23:07:38] 2026-01-23 21:06:56,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 23:07:38] 2026-01-23 21:06:56,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 23:07:38] 2026-01-23 21:06:56,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 23:07:38] 2026-01-23 21:06:56,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 23:07:38] 2026-01-23 21:06:56,965 | INFO     | all data control threads have been joined
[2026-01-23 23:07:38] 2026-01-23 21:06:57,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 23:07:38] 2026-01-23 21:06:57,645 | INFO     | aborting loop
[2026-01-23 23:07:38] 2026-01-23 21:06:57,687 | INFO     | all payload control threads have been joined
[2026-01-23 23:07:38] 2026-01-23 21:06:57,742 | INFO     | all job control threads have been joined
[2026-01-23 23:07:38] 2026-01-23 21:06:57,866 | INFO     | [job] retrieve thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:57,866 | INFO     | [job] queue monitor thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:57,939 | INFO     | [data] copytool_in thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:57,971 | INFO     | [data] control thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:58,427 | INFO     | [payload] failed_post thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:58,647 | INFO     | job.realtimelogging is not enabled
[2026-01-23 23:07:38] 2026-01-23 21:06:58,650 | INFO     | [job] job monitor thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:58,692 | INFO     | [payload] control thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:58,734 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:58,747 | INFO     | [job] control thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:58,866 | INFO     | [data] copytool_out thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:59,165 | INFO     | [payload] validate_post thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:59,216 | INFO     | [job] validate thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:59,254 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:59,327 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:06:59,652 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:07:00,866 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 23:07:38] 2026-01-23 21:07:27,208 | INFO     | PID=641171 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-23 23:07:38] 2026-01-23 21:07:27,208 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 23:07:38] 2026-01-23 21:07:27,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 23:07:38] 2026-01-23 21:07:27,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 23:07:38] 2026-01-23 21:07:33,169 | INFO     | [monitor] cgroup control has ended
[2026-01-23 23:07:38] 2026-01-23 21:07:33,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139630483957568)>', '<ExcThread(monitor, started 139629722334976)>']
[2026-01-23 23:07:38] 2026-01-23 21:07:34,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 23:07:38] 2026-01-23 21:07:34,243 | INFO     | [monitor] control thread has ended
[2026-01-23 23:07:38] 2026-01-23 21:07:38,349 | INFO     | all workflow threads have been joined
[2026-01-23 23:07:38] 2026-01-23 21:07:38,349 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 23:07:38] 2026-01-23 21:07:38,349 | INFO     | traces error code: 0
[2026-01-23 23:07:38] 2026-01-23 21:07:38,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 23:07:38] 2026-01-23 21:07:38,404 [wrapper] ==== pilot stdout END ====
[2026-01-23 23:07:38] 2026-01-23 21:07:38,407 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 23:07:38] 2026-01-23 21:07:38,408 [wrapper] pilotpid: 641171
[2026-01-23 23:07:38] 2026-01-23 21:07:38,410 [wrapper] Pilot exit status: 0
[2026-01-23 23:07:38] 2026-01-23 21:07:38,415 [wrapper] pandaids: 6977522471
[2026-01-23 23:07:38] 2026-01-23 21:07:38,438 [wrapper] cleanup supervisor_pilot  679238 641172
[2026-01-23 23:07:38] 2026-01-23 21:07:38,440 [wrapper] Test setup, not cleaning
[2026-01-23 23:07:38] 2026-01-23 21:07:38,442 [wrapper] apfmon messages muted
[2026-01-23 23:07:38] 2026-01-23 21:07:38,443 [wrapper] ==== wrapper stdout END ====
[2026-01-23 23:07:38] 2026-01-23 21:07:38,445 [wrapper] ==== wrapper stderr END ====
[2026-01-23 23:07:38]  *** Error codes and diagnostics ***
[2026-01-23 23:07:38]     "exeErrorCode": 0,
[2026-01-23 23:07:38]     "exeErrorDiag": "",
[2026-01-23 23:07:38]     "pilotErrorCode": 0,
[2026-01-23 23:07:38]     "pilotErrorDiag": "",
[2026-01-23 23:07:38]  *** Listing of results directory ***
[2026-01-23 23:07:38] total 665496
[2026-01-23 23:07:38] -rw-r--r-- 1 ek ek    584422 Jan 22 12:24 pilot3.tar.gz
[2026-01-23 23:07:38] -rwx------ 1 ek ek     36322 Jan 22 12:25 runpilot2-wrapper.sh
[2026-01-23 23:07:38] -rw-r--r-- 1 ek ek      5111 Jan 22 12:25 queuedata.json
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek       100 Jan 23 22:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 23:07:38] -rwxr-xr-x 1 ek ek      7986 Jan 23 22:09 run_atlas
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek       105 Jan 23 22:09 job.xml
[2026-01-23 23:07:38] -rw-r--r-- 2 ek ek 490167950 Jan 23 22:09 EVNT.48301084._000126.pool.root.1
[2026-01-23 23:07:38] -rw-r--r-- 2 ek ek    597758 Jan 23 22:09 input.tar.gz
[2026-01-23 23:07:38] -rw-r--r-- 2 ek ek     15845 Jan 23 22:09 start_atlas.sh
[2026-01-23 23:07:38] drwxrwx--x 2 ek ek      4096 Jan 23 22:09 shared
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek         0 Jan 23 22:09 boinc_setup_complete
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek      9841 Jan 23 22:09 init_data.xml
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek         0 Jan 23 22:09 boinc_lockfile
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek      2519 Jan 23 22:09 pandaJob.out
[2026-01-23 23:07:38] -rw------- 1 ek ek        50 Jan 23 22:09 setup.sh.local
[2026-01-23 23:07:38] -rw------- 1 ek ek   1004238 Jan 23 22:09 agis_schedconf.cvmfs.json
[2026-01-23 23:07:38] -rw------- 1 ek ek   1516246 Jan 23 22:09 agis_ddmendpoints.agis.ALL.json
[2026-01-23 23:07:38] -rw------- 1 ek ek       432 Jan 23 22:09 workernode_map.json
[2026-01-23 23:07:38] drwx------ 5 ek ek      4096 Jan 23 22:09 pilot3
[2026-01-23 23:07:38] -rw------- 1 ek ek 185811066 Jan 23 23:06 HITS.48301086._006264.pool.root.1
[2026-01-23 23:07:38] -rw------- 1 ek ek      1032 Jan 23 23:06 memory_monitor_summary.json
[2026-01-23 23:07:38] -rw------- 1 ek ek        95 Jan 23 23:06 pilot_heartbeat.json
[2026-01-23 23:07:38] -rw------- 1 ek ek    248549 Jan 23 23:06 log.48301086._006264.job.log.tgz.1
[2026-01-23 23:07:38] -rw------- 1 ek ek      6331 Jan 23 23:06 heartbeat.json
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek       530 Jan 23 23:06 boinc_task_state.xml
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek      8192 Jan 23 23:07 boinc_mmap_file
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek        27 Jan 23 23:07 wrapper_checkpoint.txt
[2026-01-23 23:07:38] -rw------- 1 ek ek      4815 Jan 23 23:07 pilotlog.txt
[2026-01-23 23:07:38] -rw------- 1 ek ek    518098 Jan 23 23:07 log.48301086._006264.job.log.1
[2026-01-23 23:07:38] -rw------- 1 ek ek       357 Jan 23 23:07 output.list
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek       620 Jan 23 23:07 runtime_log
[2026-01-23 23:07:38] -rw------- 1 ek ek    788480 Jan 23 23:07 result.tar.gz
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek      9501 Jan 23 23:07 runtime_log.err
[2026-01-23 23:07:38] -rw------- 1 ek ek       664 Jan 23 23:07 645LDmi3628nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhJ0KDmwuAEpm.diag
[2026-01-23 23:07:38] -rw-rw-r-- 1 ek ek     20921 Jan 23 23:07 stderr.txt
[2026-01-23 23:07:38] HITS file was successfully produced:
[2026-01-23 23:07:38] -rw------- 1 ek ek 185811066 Jan 23 23:06 shared/HITS.pool.root.1
[2026-01-23 23:07:38]  *** Contents of shared directory: ***
[2026-01-23 23:07:38] total 661520
[2026-01-23 23:07:38] -rw-r--r-- 2 ek ek 490167950 Jan 23 22:09 ATLAS.root_0
[2026-01-23 23:07:38] -rw-r--r-- 2 ek ek    597758 Jan 23 22:09 input.tar.gz
[2026-01-23 23:07:38] -rw-r--r-- 2 ek ek     15845 Jan 23 22:09 start_atlas.sh
[2026-01-23 23:07:38] -rw------- 1 ek ek 185811066 Jan 23 23:06 HITS.pool.root.1
[2026-01-23 23:07:38] -rw------- 1 ek ek    788480 Jan 23 23:07 result.tar.gz
23:07:40 (637339): run_atlas exited; CPU time 12947.991993
23:07:40 (637339): called boinc_finish(0)

</stderr_txt>
]]>

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