Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
20:13:32 (534912): wrapper (7.7.26015): starting
20:13:32 (534912): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 20:13:32] Arguments: --nthreads 4
[2026-01-23 20:13:32] Threads: 4
[2026-01-23 20:13:32] Checking for CVMFS
[2026-01-23 20:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 20:13:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 20:13:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 20:13:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 20:13:32] 2.13.3.0 80730 5454 47544 155444 1 50 19528980 33554432 0 130560 0 2516574 99.989 153077 194 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-23 20:13:32] CVMFS is ok
[2026-01-23 20:13:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 20:13:32] Checking for apptainer binary...
[2026-01-23 20:13:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 20:13:32] Running /usr/bin/apptainer --version
[2026-01-23 20:13:32] apptainer version 1.4.5
[2026-01-23 20:13:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 20:13:32] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-23 20:13:32] apptainer works
[2026-01-23 20:13:32] Set ATHENA_PROC_NUMBER=4
[2026-01-23 20:13:32] Set ATHENA_CORE_NUMBER=4
[2026-01-23 20:13:32] Starting ATLAS job with PandaID=6977519664
[2026-01-23 20:13:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 21:11:52]  *** The last 200 lines of the pilot log: ***
[2026-01-23 21:11:52]  guid=40008574-8f57-494b-b631-199cb2067d8f
[2026-01-23 21:11:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-23 21:11:52]  is_altstaged=None
[2026-01-23 21:11:52]  is_tar=False
[2026-01-23 21:11:52]  lfn=log.48301086._004565.job.log.tgz.1
[2026-01-23 21:11:52]  mtime=0
[2026-01-23 21:11:52]  protocol_id=None
[2026-01-23 21:11:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-23 21:11:52]  replicas=None
[2026-01-23 21:11:52]  scope=mc23_13p6TeV
[2026-01-23 21:11:52]  status=None
[2026-01-23 21:11:52]  status_code=0
[2026-01-23 21:11:52]  storage_token=
[2026-01-23 21:11:52]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6977519664/log.48301086._004565.job.log.tgz.1
[2026-01-23 21:11:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/76/log.48301086._004565.job.log.tgz.1
[2026-01-23 21:11:52]  workdir=None
[2026-01-23 21:11:52] ]
[2026-01-23 21:11:52] 2026-01-23 19:11:31,122 | INFO     | transferring file log.48301086._004565.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6977519664/log.48301086._004565.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-23 21:11:52] 2026-01-23 19:11:31,122 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6977519664/log.48301086._004565.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48301086._004565.job
[2026-01-23 21:11:52] 2026-01-23 19:11:31,131 | INFO     | adding to output.list: log.48301086._004565.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/76/log.48301086._004565.job.log.tg
[2026-01-23 21:11:52] 2026-01-23 19:11:31,131 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-23 21:11:52] 2026-01-23 19:11:31,131 | INFO     | summary of transferred files:
[2026-01-23 21:11:52] 2026-01-23 19:11:31,131 | INFO     |  -- lfn=log.48301086._004565.job.log.tgz.1, status_code=0, status=transferred
[2026-01-23 21:11:52] 2026-01-23 19:11:31,131 | INFO     | stage-out finished correctly
[2026-01-23 21:11:52] 2026-01-23 19:11:31,159 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-23 21:11:52] 2026-01-23 19:11:31,919 | INFO     | job 6977519664 has state=finished
[2026-01-23 21:11:52] 2026-01-23 19:11:31,919 | INFO     | preparing for final server update for job 6977519664 in state='finished'
[2026-01-23 21:11:52] 2026-01-23 19:11:31,919 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6977519664/jobReport.json
[2026-01-23 21:11:52] 2026-01-23 19:11:31,920 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-23 21:11:52] 2026-01-23 19:11:31,920 | INFO     | this job has now completed (state=finished)
[2026-01-23 21:11:52] 2026-01-23 19:11:31,920 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-23 21:11:52] 2026-01-23 19:11:31,920 | INFO     | log transfer has been attempted: DONE
[2026-01-23 21:11:52] 2026-01-23 19:11:31,920 | INFO     | job 6977519664 has finished - writing final server update
[2026-01-23 21:11:52] 2026-01-23 19:11:31,920 | INFO     | total number of processed events: 400 (read)
[2026-01-23 21:11:52] 2026-01-23 19:11:31,922 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6977519664/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 21:11:52] 2026-01-23 19:11:31,922 | INFO     | extracted standard info from prmon json
[2026-01-23 21:11:52] 2026-01-23 19:11:31,922 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 21:11:52] 2026-01-23 19:11:31,922 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | fitting pss+swap vs Time
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | sum of square deviations: 38744912.5
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | sum of deviations: -1097331684.0
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | mean x: 1769193836.5
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | mean y: 2508229.08
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | intersect: 50109537169.43354
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | chi2: 0.020174634905059708
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | current memory leak: -28.32 B/s (using 50 data points, chi2=0.02)
[2026-01-23 21:11:52] 2026-01-23 19:11:31,923 | INFO     | could have reported an average CPU frequency of 4191 MHz (5 samples)
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | ..............................
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . Timing measurements:
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . get job = 0 s
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . initial setup = 3 s
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . payload setup = 2 s
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . stage-in = 0 s
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . payload execution = 3452 s
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . stage-out = 0 s
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | . log creation = 0 s
[2026-01-23 21:11:52] 2026-01-23 19:11:31,924 | INFO     | ..............................
[2026-01-23 21:11:52] 2026-01-23 19:11:32,043 | INFO     | time since job start (3471s) is within the limit (349056.0s)
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | 
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | job summary report
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | --------------------------------------------------
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | PanDA job id: 6977519664
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | task id: 48301086
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | errors: (none)
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | pilot state: finished 
[2026-01-23 21:11:52] 2026-01-23 19:11:32,164 | INFO     | transexitcode: 0
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | exeerrorcode: 0
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | exeerrordiag: 
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | exitcode: 0
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | exitmsg: OK
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | cpuconsumptiontime: 12886 s
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | nevents: 400
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | neventsw: 0
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | pid: 543565
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | pgrp: 543565
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | corecount: 4
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | event service: False
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | sizes: {0: 2283804, 1: 2284265, 11: 2284265, 3458: 2310014, 3459: 2319068, 3460: 2319238}
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | --------------------------------------------------
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | 
[2026-01-23 21:11:52] 2026-01-23 19:11:32,165 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | job 6977519664 has completed (purged errors)
[2026-01-23 21:11:52] 2026-01-23 19:11:32,174 | INFO     | overall cleanup function is called
[2026-01-23 21:11:52] 2026-01-23 19:11:33,181 | INFO     | --- collectZombieJob: --- 10, [543565]
[2026-01-23 21:11:52] 2026-01-23 19:11:33,181 | INFO     | zombie collector waiting for pid 543565
[2026-01-23 21:11:52] 2026-01-23 19:11:33,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 21:11:52] 2026-01-23 19:11:33,181 | INFO     | collected zombie processes
[2026-01-23 21:11:52] 2026-01-23 19:11:33,181 | INFO     | will attempt to kill all subprocesses of pid=543565
[2026-01-23 21:11:52] 2026-01-23 19:11:33,273 | INFO     | process IDs to be killed: [543565] (in reverse order)
[2026-01-23 21:11:52] 2026-01-23 19:11:33,308 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 21:11:52] 2026-01-23 19:11:33,308 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 21:11:52] 2026-01-23 19:11:33,311 | INFO     | did not find any defunct processes belonging to 543565
[2026-01-23 21:11:52] 2026-01-23 19:11:33,314 | INFO     | did not find any defunct processes belonging to 543565
[2026-01-23 21:11:52] 2026-01-23 19:11:33,315 | INFO     | ready for new job
[2026-01-23 21:11:52] 2026-01-23 19:11:33,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 21:11:52] 2026-01-23 19:11:33,316 | INFO     | **************************************
[2026-01-23 21:11:52] 2026-01-23 19:11:33,316 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 21:11:52] 2026-01-23 19:11:33,316 | INFO     | **************************************
[2026-01-23 21:11:52] 2026-01-23 19:11:33,316 | INFO     | 
[2026-01-23 21:11:52] 2026-01-23 19:11:33,316 | INFO     | architecture information:
[2026-01-23 21:11:52] 2026-01-23 19:11:33,316 | INFO     | executing command: cat /etc/os-release
[2026-01-23 21:11:52] 2026-01-23 19:11:33,324 | INFO     | cat /etc/os-release:
[2026-01-23 21:11:52] NAME="CentOS Linux"
[2026-01-23 21:11:52] VERSION="7 (Core)"
[2026-01-23 21:11:52] ID="centos"
[2026-01-23 21:11:52] ID_LIKE="rhel fedora"
[2026-01-23 21:11:52] VERSION_ID="7"
[2026-01-23 21:11:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 21:11:52] ANSI_COLOR="0;31"
[2026-01-23 21:11:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 21:11:52] HOME_URL="https://www.centos.org/"
[2026-01-23 21:11:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 21:11:52] 
[2026-01-23 21:11:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 21:11:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 21:11:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 21:11:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 21:11:52] 
[2026-01-23 21:11:52] 2026-01-23 19:11:33,324 | INFO     | **************************************
[2026-01-23 21:11:52] 2026-01-23 19:11:33,827 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | INFO     | sufficient remaining disk space (66104328192 B)
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | INFO     | update_server=False
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 21:11:52] 2026-01-23 19:11:33,835 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 21:11:52] 2026-01-23 19:11:33,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 21:11:52] 2026-01-23 19:11:33,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 21:11:52] 2026-01-23 19:11:34,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 21:11:52] 2026-01-23 19:11:34,216 | INFO     | all data control threads have been joined
[2026-01-23 21:11:52] 2026-01-23 19:11:34,624 | INFO     | all job control threads have been joined
[2026-01-23 21:11:52] 2026-01-23 19:11:34,745 | INFO     | all payload control threads have been joined
[2026-01-23 21:11:52] 2026-01-23 19:11:34,840 | INFO     | [job] retrieve thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:34,841 | INFO     | [job] queue monitor thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:34,915 | INFO     | [data] copytool_in thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:35,221 | INFO     | [data] control thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:35,412 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:35,481 | INFO     | [payload] failed_post thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:35,625 | INFO     | [job] control thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:35,750 | INFO     | [payload] control thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:35,996 | WARNING  | process 543565 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 21:11:52] 2026-01-23 19:11:36,029 | INFO     | [payload] validate_post thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:36,058 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 21:11:52] 2026-01-23 19:11:36,149 | INFO     | number of running child processes to parent process 543565: 1
[2026-01-23 21:11:52] 2026-01-23 19:11:36,150 | INFO     | maximum number of monitored processes: 6
[2026-01-23 21:11:52] 2026-01-23 19:11:36,150 | INFO     | aborting job monitoring since job object (job id=6977519664) has expired
[2026-01-23 21:11:52] 2026-01-23 19:11:36,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 21:11:52] 2026-01-23 19:11:36,150 | INFO     | will abort loop
[2026-01-23 21:11:52] 2026-01-23 19:11:36,169 | INFO     | [data] copytool_out thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:36,190 | INFO     | [job] validate thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:36,258 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:36,267 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:37,155 | INFO     | [job] job monitor thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:37,192 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 21:11:52] 2026-01-23 19:11:41,198 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:44,599 | INFO     | job.realtimelogging is not enabled
[2026-01-23 21:11:52] 2026-01-23 19:11:45,605 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 21:11:52] 2026-01-23 19:11:45,878 | INFO     | [monitor] cgroup control has ended
[2026-01-23 21:11:52] 2026-01-23 19:11:46,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284740486976)>', '<ExcThread(monitor, started 140284000188160)>']
[2026-01-23 21:11:52] 2026-01-23 19:11:47,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 21:11:52] 2026-01-23 19:11:47,906 | INFO     | [monitor] control thread has ended
[2026-01-23 21:11:52] 2026-01-23 19:11:51,979 | INFO     | all workflow threads have been joined
[2026-01-23 21:11:52] 2026-01-23 19:11:51,980 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 21:11:52] 2026-01-23 19:11:51,980 | INFO     | traces error code: 0
[2026-01-23 21:11:52] 2026-01-23 19:11:51,980 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 21:11:52] 2026-01-23 19:11:52,024 [wrapper] ==== pilot stdout END ====
[2026-01-23 21:11:52] 2026-01-23 19:11:52,027 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 21:11:52] 2026-01-23 19:11:52,029 [wrapper] pilotpid: 538746
[2026-01-23 21:11:52] 2026-01-23 19:11:52,030 [wrapper] Pilot exit status: 0
[2026-01-23 21:11:52] 2026-01-23 19:11:52,036 [wrapper] pandaids: 6977519664
[2026-01-23 21:11:52] 2026-01-23 19:11:52,059 [wrapper] cleanup supervisor_pilot  576775 538747
[2026-01-23 21:11:52] 2026-01-23 19:11:52,061 [wrapper] Test setup, not cleaning
[2026-01-23 21:11:52] 2026-01-23 19:11:52,062 [wrapper] apfmon messages muted
[2026-01-23 21:11:52] 2026-01-23 19:11:52,063 [wrapper] ==== wrapper stdout END ====
[2026-01-23 21:11:52] 2026-01-23 19:11:52,065 [wrapper] ==== wrapper stderr END ====
[2026-01-23 21:11:52]  *** Error codes and diagnostics ***
[2026-01-23 21:11:52]     "exeErrorCode": 0,
[2026-01-23 21:11:52]     "exeErrorDiag": "",
[2026-01-23 21:11:52]     "pilotErrorCode": 0,
[2026-01-23 21:11:52]     "pilotErrorDiag": "",
[2026-01-23 21:11:52]  *** Listing of results directory ***
[2026-01-23 21:11:52] total 672580
[2026-01-23 21:11:52] -rw-r--r-- 1 ek ek      5111 Jan 22 07:10 queuedata.json
[2026-01-23 21:11:52] -rwx------ 1 ek ek     36322 Jan 22 07:10 runpilot2-wrapper.sh
[2026-01-23 21:11:52] -rw-r--r-- 1 ek ek    584422 Jan 22 07:10 pilot3.tar.gz
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek       100 Jan 23 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 21:11:52] -rwxr-xr-x 1 ek ek      7986 Jan 23 20:13 run_atlas
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek       105 Jan 23 20:13 job.xml
[2026-01-23 21:11:52] -rw-r--r-- 2 ek ek 500705513 Jan 23 20:13 EVNT.48301084._000092.pool.root.1
[2026-01-23 21:11:52] -rw-r--r-- 2 ek ek    597753 Jan 23 20:13 input.tar.gz
[2026-01-23 21:11:52] -rw-r--r-- 2 ek ek     15845 Jan 23 20:13 start_atlas.sh
[2026-01-23 21:11:52] drwxrwx--x 2 ek ek      4096 Jan 23 20:13 shared
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek         0 Jan 23 20:13 boinc_setup_complete
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek      9841 Jan 23 20:13 init_data.xml
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek         0 Jan 23 20:13 boinc_lockfile
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek      2519 Jan 23 20:13 pandaJob.out
[2026-01-23 21:11:52] -rw------- 1 ek ek        50 Jan 23 20:13 setup.sh.local
[2026-01-23 21:11:52] -rw------- 1 ek ek   1004254 Jan 23 20:13 agis_schedconf.cvmfs.json
[2026-01-23 21:11:52] -rw------- 1 ek ek   1516246 Jan 23 20:13 agis_ddmendpoints.agis.ALL.json
[2026-01-23 21:11:52] -rw------- 1 ek ek       424 Jan 23 20:13 workernode_map.json
[2026-01-23 21:11:52] drwx------ 5 ek ek      4096 Jan 23 20:13 pilot3
[2026-01-23 21:11:52] -rw------- 1 ek ek        95 Jan 23 21:11 pilot_heartbeat.json
[2026-01-23 21:11:52] -rw------- 1 ek ek 182517958 Jan 23 21:11 HITS.48301086._004565.pool.root.1
[2026-01-23 21:11:52] -rw------- 1 ek ek      1032 Jan 23 21:11 memory_monitor_summary.json
[2026-01-23 21:11:52] -rw------- 1 ek ek    251510 Jan 23 21:11 log.48301086._004565.job.log.tgz.1
[2026-01-23 21:11:52] -rw------- 1 ek ek      6319 Jan 23 21:11 heartbeat.json
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek      8192 Jan 23 21:11 boinc_mmap_file
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek        27 Jan 23 21:11 wrapper_checkpoint.txt
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek       530 Jan 23 21:11 boinc_task_state.xml
[2026-01-23 21:11:52] -rw------- 1 ek ek      5139 Jan 23 21:11 pilotlog.txt
[2026-01-23 21:11:52] -rw------- 1 ek ek    520923 Jan 23 21:11 log.48301086._004565.job.log.1
[2026-01-23 21:11:52] -rw------- 1 ek ek       357 Jan 23 21:11 output.list
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek       620 Jan 23 21:11 runtime_log
[2026-01-23 21:11:52] -rw------- 1 ek ek    788480 Jan 23 21:11 result.tar.gz
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek      9501 Jan 23 21:11 runtime_log.err
[2026-01-23 21:11:52] -rw------- 1 ek ek       663 Jan 23 21:11 OZJNDma8128nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKszKDmVNbomn.diag
[2026-01-23 21:11:52] -rw-rw-r-- 1 ek ek     21111 Jan 23 21:11 stderr.txt
[2026-01-23 21:11:52] HITS file was successfully produced:
[2026-01-23 21:11:52] -rw------- 1 ek ek 182517958 Jan 23 21:11 shared/HITS.pool.root.1
[2026-01-23 21:11:52]  *** Contents of shared directory: ***
[2026-01-23 21:11:52] total 668596
[2026-01-23 21:11:52] -rw-r--r-- 2 ek ek 500705513 Jan 23 20:13 ATLAS.root_0
[2026-01-23 21:11:52] -rw-r--r-- 2 ek ek    597753 Jan 23 20:13 input.tar.gz
[2026-01-23 21:11:52] -rw-r--r-- 2 ek ek     15845 Jan 23 20:13 start_atlas.sh
[2026-01-23 21:11:52] -rw------- 1 ek ek 182517958 Jan 23 21:11 HITS.pool.root.1
[2026-01-23 21:11:52] -rw------- 1 ek ek    788480 Jan 23 21:11 result.tar.gz
21:11:53 (534912): run_atlas exited; CPU time 12918.990151
21:11:53 (534912): called boinc_finish(0)

</stderr_txt>
]]>

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