Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:55:44 (8861): wrapper (7.7.26015): starting
06:55:44 (8861): wrapper: running run_atlas (--nthreads 12)
[2026-01-22 06:55:44] Arguments: --nthreads 12
[2026-01-22 06:55:44] Threads: 12
[2026-01-22 06:55:44] Checking for CVMFS
[2026-01-22 06:55:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 06:55:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 06:55:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 06:55:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 06:55:45] 2.11.2.0 2979 369729 103144 155392 3 188 11247061 20275200 1 130560 2 155085557 99.953 21253922 15915 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-22 06:55:45] CVMFS is ok
[2026-01-22 06:55:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 06:55:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 06:55:45] Further information can be found at the LHC@home message board.
[2026-01-22 06:55:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 06:55:45] Checking for apptainer binary...
[2026-01-22 06:55:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 06:55:45] Running /usr/bin/apptainer --version
[2026-01-22 06:55:45] apptainer version 1.3.2-1.el7
[2026-01-22 06:55:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 06:55:46] c-205-7.aglt2.org
[2026-01-22 06:55:46] apptainer works
[2026-01-22 06:55:46] Set ATHENA_PROC_NUMBER=12
[2026-01-22 06:55:46] Set ATHENA_CORE_NUMBER=12
[2026-01-22 06:55:46] Starting ATLAS job with PandaID=6969273115
[2026-01-22 06:55:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 07:47:13]  *** The last 200 lines of the pilot log: ***
[2026-01-22 07:47:13]  protocol_id=None
[2026-01-22 07:47:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-22 07:47:13]  replicas=None
[2026-01-22 07:47:13]  scope=mc23_13p6TeV
[2026-01-22 07:47:13]  status=None
[2026-01-22 07:47:13]  status_code=0
[2026-01-22 07:47:13]  storage_token=
[2026-01-22 07:47:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969273115/log.48215263._007441.job.log.tgz.1
[2026-01-22 07:47:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/1d/log.48215263._007441.job.log.tgz.1
[2026-01-22 07:47:13]  workdir=None
[2026-01-22 07:47:13] ]
[2026-01-22 07:47:13] 2026-01-22 12:46:31,895 | INFO     | transferring file log.48215263._007441.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969273115/log.48215263._007441.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-22 07:47:13] 2026-01-22 12:46:31,895 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969273115/log.48215263._007441.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._007441.job
[2026-01-22 07:47:13] 2026-01-22 12:46:31,916 | INFO     | adding to output.list: log.48215263._007441.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/1d/log.48215263._007441.job.log.tg
[2026-01-22 07:47:13] 2026-01-22 12:46:31,917 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-22 07:47:13] 2026-01-22 12:46:31,917 | INFO     | summary of transferred files:
[2026-01-22 07:47:13] 2026-01-22 12:46:31,917 | INFO     |  -- lfn=log.48215263._007441.job.log.tgz.1, status_code=0, status=transferred
[2026-01-22 07:47:13] 2026-01-22 12:46:31,918 | INFO     | stage-out finished correctly
[2026-01-22 07:47:13] 2026-01-22 12:46:33,078 | INFO     | time since job start (3032s) is within the limit (349056.0s)
[2026-01-22 07:47:13] 2026-01-22 12:46:33,947 | INFO     | monitor loop #229: job 0:6969273115 is in state 'finished'
[2026-01-22 07:47:13] 2026-01-22 12:46:33,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 07:47:13] 2026-01-22 12:46:34,165 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-22 07:47:13] 2026-01-22 12:46:34,279 | INFO     | PID=12566 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-22 07:47:13] 2026-01-22 12:46:35,279 | INFO     | time since job start (3034s) is within the limit (349056.0s)
[2026-01-22 07:47:13] 2026-01-22 12:46:36,083 | INFO     | job 6969273115 has state=finished
[2026-01-22 07:47:13] 2026-01-22 12:46:36,083 | INFO     | preparing for final server update for job 6969273115 in state='finished'
[2026-01-22 07:47:13] 2026-01-22 12:46:36,084 | INFO     | this job has now completed (state=finished)
[2026-01-22 07:47:13] 2026-01-22 12:46:36,084 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-22 07:47:13] 2026-01-22 12:46:36,084 | INFO     | log transfer has been attempted: DONE
[2026-01-22 07:47:13] 2026-01-22 12:46:36,084 | INFO     | job 6969273115 has finished - writing final server update
[2026-01-22 07:47:13] 2026-01-22 12:46:36,084 | INFO     | total number of processed events: 400 (read)
[2026-01-22 07:47:13] 2026-01-22 12:46:36,085 | INFO     | executing command: lscpu
[2026-01-22 07:47:13] 2026-01-22 12:46:36,109 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-22 07:47:13] 2026-01-22 12:46:36,450 | INFO     | monitor loop #230: job 0:6969273115 is in state 'finished'
[2026-01-22 07:47:13] 2026-01-22 12:46:36,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 07:47:13] 2026-01-22 12:46:37,284 | INFO     | time since job start (3036s) is within the limit (349056.0s)
[2026-01-22 07:47:13] 2026-01-22 12:46:38,953 | INFO     | monitor loop #231: job 0:6969273115 is in state 'finished'
[2026-01-22 07:47:13] 2026-01-22 12:46:38,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 07:47:13] 2026-01-22 12:46:39,290 | INFO     | time since job start (3038s) is within the limit (349056.0s)
[2026-01-22 07:47:13] 2026-01-22 12:46:40,795 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-22 07:47:13] 2026-01-22 12:46:40,798 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1673.5833333333333
[2026-01-22 07:47:13] 2026-01-22 12:46:40,800 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969273115/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 07:47:13] 2026-01-22 12:46:40,800 | INFO     | extracted standard info from prmon json
[2026-01-22 07:47:13] 2026-01-22 12:46:40,801 | INFO     | extracted standard memory fields from prmon json
[2026-01-22 07:47:13] 2026-01-22 12:46:40,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-22 07:47:13] 2026-01-22 12:46:40,801 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-22 07:47:13] 2026-01-22 12:46:40,801 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-22 07:47:13] 2026-01-22 12:46:40,802 | INFO     | fitting pss+swap vs Time
[2026-01-22 07:47:13] 2026-01-22 12:46:40,802 | INFO     | sum of square deviations: 24640462.0
[2026-01-22 07:47:13] 2026-01-22 12:46:40,803 | INFO     | sum of deviations: 1400028567.9999998
[2026-01-22 07:47:13] 2026-01-22 12:46:40,803 | INFO     | mean x: 1769084576.0
[2026-01-22 07:47:13] 2026-01-22 12:46:40,803 | INFO     | mean y: 2997161.3255813955
[2026-01-22 07:47:13] 2026-01-22 12:46:40,803 | INFO     | intersect: -100513338352.52017
[2026-01-22 07:47:13] 2026-01-22 12:46:40,803 | INFO     | chi2: 0.031040716414167183
[2026-01-22 07:47:13] 2026-01-22 12:46:40,803 | INFO     | current memory leak: 56.82 B/s (using 43 data points, chi2=0.03)
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | could have reported an average CPU frequency of 1899 MHz (5 samples)
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | ..............................
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | . Timing measurements:
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | . get job = 0 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | . initial setup = 2 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | . payload setup = 7 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | . stage-in = 0 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,804 | INFO     | . payload execution = 3003 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,805 | INFO     | . stage-out = 0 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,805 | INFO     | . log creation = 0 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,805 | INFO     | ..............................
[2026-01-22 07:47:13] 2026-01-22 12:46:40,886 | INFO     | 
[2026-01-22 07:47:13] 2026-01-22 12:46:40,886 | INFO     | job summary report
[2026-01-22 07:47:13] 2026-01-22 12:46:40,886 | INFO     | --------------------------------------------------
[2026-01-22 07:47:13] 2026-01-22 12:46:40,887 | INFO     | PanDA job id: 6969273115
[2026-01-22 07:47:13] 2026-01-22 12:46:40,887 | INFO     | task id: 48215263
[2026-01-22 07:47:13] 2026-01-22 12:46:40,887 | INFO     | errors: (none)
[2026-01-22 07:47:13] 2026-01-22 12:46:40,887 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-22 07:47:13] 2026-01-22 12:46:40,887 | INFO     | pilot state: finished 
[2026-01-22 07:47:13] 2026-01-22 12:46:40,888 | INFO     | transexitcode: 0
[2026-01-22 07:47:13] 2026-01-22 12:46:40,888 | INFO     | exeerrorcode: 0
[2026-01-22 07:47:13] 2026-01-22 12:46:40,888 | INFO     | exeerrordiag: 
[2026-01-22 07:47:13] 2026-01-22 12:46:40,888 | INFO     | exitcode: 0
[2026-01-22 07:47:13] 2026-01-22 12:46:40,888 | INFO     | exitmsg: OK
[2026-01-22 07:47:13] 2026-01-22 12:46:40,888 | INFO     | cpuconsumptiontime: 31481 s
[2026-01-22 07:47:13] 2026-01-22 12:46:40,889 | INFO     | nevents: 400
[2026-01-22 07:47:13] 2026-01-22 12:46:40,889 | INFO     | neventsw: 0
[2026-01-22 07:47:13] 2026-01-22 12:46:40,889 | INFO     | pid: 18970
[2026-01-22 07:47:13] 2026-01-22 12:46:40,889 | INFO     | pgrp: 18970
[2026-01-22 07:47:13] 2026-01-22 12:46:40,889 | INFO     | corecount: 12
[2026-01-22 07:47:13] 2026-01-22 12:46:40,889 | INFO     | event service: False
[2026-01-22 07:47:13] 2026-01-22 12:46:40,889 | INFO     | sizes: {0: 2283945, 5: 2284207, 11: 2284263, 3013: 2309585, 3014: 2318583, 3016: 2318639, 3023: 2318993}
[2026-01-22 07:47:13] 2026-01-22 12:46:40,890 | INFO     | --------------------------------------------------
[2026-01-22 07:47:13] 2026-01-22 12:46:40,890 | INFO     | 
[2026-01-22 07:47:13] 2026-01-22 12:46:40,890 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-22 07:47:13] 2026-01-22 12:46:40,915 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,915 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,915 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,916 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,917 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 07:47:13] 2026-01-22 12:46:40,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,918 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 07:47:13] 2026-01-22 12:46:40,918 | INFO     | job 6969273115 has completed (purged errors)
[2026-01-22 07:47:13] 2026-01-22 12:46:40,918 | INFO     | overall cleanup function is called
[2026-01-22 07:47:13] 2026-01-22 12:46:41,925 | INFO     | --- collectZombieJob: --- 10, [18970]
[2026-01-22 07:47:13] 2026-01-22 12:46:41,926 | INFO     | zombie collector waiting for pid 18970
[2026-01-22 07:47:13] 2026-01-22 12:46:41,926 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 07:47:13] 2026-01-22 12:46:41,926 | INFO     | collected zombie processes
[2026-01-22 07:47:13] 2026-01-22 12:46:41,926 | INFO     | will attempt to kill all subprocesses of pid=18970
[2026-01-22 07:47:13] 2026-01-22 12:46:42,021 | INFO     | process IDs to be killed: [18970] (in reverse order)
[2026-01-22 07:47:13] 2026-01-22 12:46:42,074 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 07:47:13] 2026-01-22 12:46:42,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 07:47:13] 2026-01-22 12:46:42,078 | INFO     | did not find any defunct processes belonging to 18970
[2026-01-22 07:47:13] 2026-01-22 12:46:42,080 | INFO     | did not find any defunct processes belonging to 18970
[2026-01-22 07:47:13] 2026-01-22 12:46:42,080 | INFO     | ready for new job
[2026-01-22 07:47:13] 2026-01-22 12:46:42,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 07:47:13] 2026-01-22 12:46:42,082 | INFO     | ***************************************
[2026-01-22 07:47:13] 2026-01-22 12:46:42,082 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-22 07:47:13] 2026-01-22 12:46:42,082 | INFO     | ***************************************
[2026-01-22 07:47:13] 2026-01-22 12:46:42,082 | INFO     | 
[2026-01-22 07:47:13] 2026-01-22 12:46:42,083 | INFO     | architecture information:
[2026-01-22 07:47:13] 2026-01-22 12:46:42,083 | INFO     | executing command: cat /etc/os-release
[2026-01-22 07:47:13] 2026-01-22 12:46:42,098 | INFO     | cat /etc/os-release:
[2026-01-22 07:47:13] NAME="CentOS Linux"
[2026-01-22 07:47:13] VERSION="7 (Core)"
[2026-01-22 07:47:13] ID="centos"
[2026-01-22 07:47:13] ID_LIKE="rhel fedora"
[2026-01-22 07:47:13] VERSION_ID="7"
[2026-01-22 07:47:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 07:47:13] ANSI_COLOR="0;31"
[2026-01-22 07:47:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 07:47:13] HOME_URL="https://www.centos.org/"
[2026-01-22 07:47:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 07:47:13] 
[2026-01-22 07:47:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 07:47:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 07:47:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 07:47:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 07:47:13] 
[2026-01-22 07:47:13] 2026-01-22 12:46:42,098 | INFO     | ***************************************
[2026-01-22 07:47:13] 2026-01-22 12:46:42,601 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-22 07:47:13] 2026-01-22 12:46:42,618 | INFO     | sufficient remaining disk space (28629270528 B)
[2026-01-22 07:47:13] 2026-01-22 12:46:42,618 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 07:47:13] 2026-01-22 12:46:42,618 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 07:47:13] 2026-01-22 12:46:42,619 | INFO     | update_server=False
[2026-01-22 07:47:13] 2026-01-22 12:46:42,619 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 07:47:13] 2026-01-22 12:46:42,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 07:47:13] 2026-01-22 12:46:42,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 07:47:13] 2026-01-22 12:46:42,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 07:47:13] 2026-01-22 12:46:42,620 | INFO     | aborting loop
[2026-01-22 07:47:13] 2026-01-22 12:46:42,646 | INFO     | all job control threads have been joined
[2026-01-22 07:47:13] 2026-01-22 12:46:42,851 | INFO     | all data control threads have been joined
[2026-01-22 07:47:13] 2026-01-22 12:46:43,005 | INFO     | all payload control threads have been joined
[2026-01-22 07:47:13] 2026-01-22 12:46:43,624 | INFO     | [job] retrieve thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:43,626 | INFO     | [job] queue monitor thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:43,626 | INFO     | [job] job monitor thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:43,652 | INFO     | [job] control thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:43,853 | INFO     | [data] control thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:43,944 | INFO     | [data] copytool_in thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:44,010 | INFO     | [payload] control thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:44,150 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:44,408 | INFO     | [job] validate thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:44,565 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:44,625 | INFO     | [data] copytool_out thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:44,753 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 07:47:13] 2026-01-22 12:46:44,809 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:44,898 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:45,040 | INFO     | [payload] validate_post thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:45,111 | INFO     | [payload] failed_post thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:46:48,759 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 07:47:13] 2026-01-22 12:47:05,922 | INFO     | [monitor] cgroup control has ended
[2026-01-22 07:47:13] 2026-01-22 12:47:07,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510579033920)>', '<ExcThread(monitor, started 140510282884864)>']
[2026-01-22 07:47:13] 2026-01-22 12:47:12,626 | INFO     | PID=12566 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-22 07:47:13] 2026-01-22 12:47:12,626 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 07:47:13] 2026-01-22 12:47:12,627 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 07:47:13] 2026-01-22 12:47:12,627 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 07:47:13] 2026-01-22 12:47:12,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 07:47:13] 2026-01-22 12:47:12,627 | INFO     | [monitor] control thread has ended
[2026-01-22 07:47:13] 2026-01-22 12:47:12,979 | INFO     | all workflow threads have been joined
[2026-01-22 07:47:13] 2026-01-22 12:47:12,979 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 07:47:13] 2026-01-22 12:47:12,979 | INFO     | traces error code: 0
[2026-01-22 07:47:13] 2026-01-22 12:47:12,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 07:47:13] 2026-01-22 12:47:13,090 [wrapper] ==== pilot stdout END ====
[2026-01-22 07:47:13] 2026-01-22 12:47:13,094 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 07:47:13] 2026-01-22 12:47:13,098 [wrapper] pilotpid: 12566
[2026-01-22 07:47:13] 2026-01-22 12:47:13,102 [wrapper] Pilot exit status: 0
[2026-01-22 07:47:13] 2026-01-22 12:47:13,117 [wrapper] pandaids: 6969273115
[2026-01-22 07:47:13] 2026-01-22 12:47:13,167 [wrapper] cleanup supervisor_pilot  7712 12567
[2026-01-22 07:47:13] 2026-01-22 12:47:13,171 [wrapper] Test setup, not cleaning
[2026-01-22 07:47:13] 2026-01-22 12:47:13,175 [wrapper] apfmon messages muted
[2026-01-22 07:47:13] 2026-01-22 12:47:13,179 [wrapper] ==== wrapper stdout END ====
[2026-01-22 07:47:13] 2026-01-22 12:47:13,183 [wrapper] ==== wrapper stderr END ====
[2026-01-22 07:47:13]  *** Error codes and diagnostics ***
[2026-01-22 07:47:13]     "exeErrorCode": 0,
[2026-01-22 07:47:13]     "exeErrorDiag": "",
[2026-01-22 07:47:13]     "pilotErrorCode": 0,
[2026-01-22 07:47:13]     "pilotErrorDiag": "",
[2026-01-22 07:47:13]  *** Listing of results directory ***
[2026-01-22 07:47:13] total 740668
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 18:46 pilot3.tar.gz
[2026-01-22 07:47:13] -rwx------ 1 boincer umatlas     36322 Jan 13 18:46 runpilot2-wrapper.sh
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 18:46 queuedata.json
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas       100 Jan 22 06:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 07:47:13] -rwxr-xr-x 1 boincer umatlas      7986 Jan 22 06:55 run_atlas
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas       105 Jan 22 06:55 job.xml
[2026-01-22 07:47:13] -rw-r--r-- 2 boincer umatlas 594980897 Jan 22 06:55 EVNT.32794306._000298.pool.root.1
[2026-01-22 07:47:13] -rw-r--r-- 2 boincer umatlas     15847 Jan 22 06:55 start_atlas.sh
[2026-01-22 07:47:13] drwxrwx--x 2 boincer umatlas      4096 Jan 22 06:55 shared
[2026-01-22 07:47:13] -rw-r--r-- 2 boincer umatlas    592384 Jan 22 06:55 input.tar.gz
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas         0 Jan 22 06:55 boinc_lockfile
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas      2505 Jan 22 06:55 pandaJob.out
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas        57 Jan 22 06:55 setup.sh.local
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas   1002771 Jan 22 06:55 agis_schedconf.cvmfs.json
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas   1516246 Jan 22 06:56 agis_ddmendpoints.agis.ALL.json
[2026-01-22 07:47:13] drwx------ 5 boincer umatlas      4096 Jan 22 06:56 pilot3
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas      5952 Jan 22 07:40 init_data.xml
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas 157885734 Jan 22 07:46 HITS.48215263._007441.pool.root.1
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas       530 Jan 22 07:46 boinc_task_state.xml
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas      1041 Jan 22 07:46 memory_monitor_summary.json
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas    364711 Jan 22 07:46 log.48215263._007441.job.log.tgz.1
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas        95 Jan 22 07:46 pilot_heartbeat.json
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas        27 Jan 22 07:46 wrapper_checkpoint.txt
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas      8192 Jan 22 07:46 boinc_mmap_file
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas      7836 Jan 22 07:46 heartbeat.json
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas      4746 Jan 22 07:47 pilotlog.txt
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas    458430 Jan 22 07:47 log.48215263._007441.job.log.1
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas       357 Jan 22 07:47 output.list
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas       620 Jan 22 07:47 runtime_log
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas    839680 Jan 22 07:47 result.tar.gz
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas      9339 Jan 22 07:47 runtime_log.err
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas       656 Jan 22 07:47 bEIMDmKH3z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmb2iKDm3sVb8n.diag
[2026-01-22 07:47:13] -rw-r--r-- 1 boincer umatlas     21958 Jan 22 07:47 stderr.txt
[2026-01-22 07:47:13] HITS file was successfully produced:
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas 157885734 Jan 22 07:46 shared/HITS.pool.root.1
[2026-01-22 07:47:13]  *** Contents of shared directory: ***
[2026-01-22 07:47:13] total 736652
[2026-01-22 07:47:13] -rw-r--r-- 2 boincer umatlas 594980897 Jan 22 06:55 ATLAS.root_0
[2026-01-22 07:47:13] -rw-r--r-- 2 boincer umatlas     15847 Jan 22 06:55 start_atlas.sh
[2026-01-22 07:47:13] -rw-r--r-- 2 boincer umatlas    592384 Jan 22 06:55 input.tar.gz
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas 157885734 Jan 22 07:46 HITS.pool.root.1
[2026-01-22 07:47:13] -rw------- 1 boincer umatlas    839680 Jan 22 07:47 result.tar.gz
07:47:15 (8861): run_atlas exited; CPU time 31462.427484
07:47:15 (8861): called boinc_finish(0)

</stderr_txt>
]]>

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