Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:05:18 (2238835): wrapper (7.7.26015): starting
07:05:18 (2238835): wrapper: running run_atlas (--nthreads 8)
[2026-01-22 07:05:18] Arguments: --nthreads 8
[2026-01-22 07:05:18] Threads: 8
[2026-01-22 07:05:18] Checking for CVMFS
[2026-01-22 07:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 07:05:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 07:05:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 07:05:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 07:05:20] 2.13.3.0 7236 41575 234336 155392 0 1210 38653503 40960000 29904 16776704 0 109460797 99.753 70809778 38054 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-22 07:05:20] CVMFS is ok
[2026-01-22 07:05:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 07:05:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 07:05:20] Further information can be found at the LHC@home message board.
[2026-01-22 07:05:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 07:05:20] Checking for apptainer binary...
[2026-01-22 07:05:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 07:05:20] Running /usr/bin/apptainer --version
[2026-01-22 07:05:21] apptainer version 1.4.5-2.el9
[2026-01-22 07:05:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 07:05:21] c-212-11.aglt2.org
[2026-01-22 07:05:21] apptainer works
[2026-01-22 07:05:21] Set ATHENA_PROC_NUMBER=8
[2026-01-22 07:05:21] Set ATHENA_CORE_NUMBER=8
[2026-01-22 07:05:21] Starting ATLAS job with PandaID=6969263459
[2026-01-22 07:05:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 10:03:43]  *** The last 200 lines of the pilot log: ***
[2026-01-22 10:03:43] 2026-01-22 15:03:04,685 | INFO     | monitor loop #679: job 0:6969263459 is in state 'finished'
[2026-01-22 10:03:43] 2026-01-22 15:03:04,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 10:03:43] 2026-01-22 15:03:05,133 | INFO     | time since job start (10609s) is within the limit (349056.0s)
[2026-01-22 10:03:43] 2026-01-22 15:03:07,138 | INFO     | time since job start (10611s) is within the limit (349056.0s)
[2026-01-22 10:03:43] 2026-01-22 15:03:07,192 | INFO     | monitor loop #680: job 0:6969263459 is in state 'finished'
[2026-01-22 10:03:43] 2026-01-22 15:03:07,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 10:03:43] 2026-01-22 15:03:08,988 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-22 10:03:43] 2026-01-22 15:03:08,996 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3128.4985624999995
[2026-01-22 10:03:43] 2026-01-22 15:03:09,035 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6969263459/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,036 | INFO     | extracted standard info from prmon json
[2026-01-22 10:03:43] 2026-01-22 15:03:09,036 | INFO     | extracted standard memory fields from prmon json
[2026-01-22 10:03:43] 2026-01-22 15:03:09,036 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-22 10:03:43] 2026-01-22 15:03:09,037 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-22 10:03:43] 2026-01-22 15:03:09,037 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-22 10:03:43] 2026-01-22 15:03:09,050 | INFO     | fitting pss+swap vs Time
[2026-01-22 10:03:43] 2026-01-22 15:03:09,051 | INFO     | sum of square deviations: 1605602878.3237062
[2026-01-22 10:03:43] 2026-01-22 15:03:09,051 | INFO     | sum of deviations: 42272658397.4798
[2026-01-22 10:03:43] 2026-01-22 15:03:09,051 | INFO     | mean x: 1769088920.3699422
[2026-01-22 10:03:43] 2026-01-22 15:03:09,052 | INFO     | mean y: 2469377.976878613
[2026-01-22 10:03:43] 2026-01-22 15:03:09,052 | INFO     | intersect: -46574484746.34655
[2026-01-22 10:03:43] 2026-01-22 15:03:09,052 | INFO     | chi2: 3.9553567200025195
[2026-01-22 10:03:43] 2026-01-22 15:03:09,052 | INFO     | sum of square deviations: 1470390826.375
[2026-01-22 10:03:43] 2026-01-22 15:03:09,076 | INFO     | sum of deviations: 51755495795.5
[2026-01-22 10:03:43] 2026-01-22 15:03:09,076 | INFO     | mean x: 1769088767.875
[2026-01-22 10:03:43] 2026-01-22 15:03:09,076 | INFO     | mean y: 2479783.404761905
[2026-01-22 10:03:43] 2026-01-22 15:03:09,076 | INFO     | intersect: -62266724189.62783
[2026-01-22 10:03:43] 2026-01-22 15:03:09,077 | INFO     | chi2: 3.2906565447565996
[2026-01-22 10:03:43] 2026-01-22 15:03:09,077 | INFO     | current chi2=3.2906565447565996 (change=16.805062660580873 %)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,077 | INFO     | right removable region: 167
[2026-01-22 10:03:43] 2026-01-22 15:03:09,077 | INFO     | sum of square deviations: 1470372526.375
[2026-01-22 10:03:43] 2026-01-22 15:03:09,078 | INFO     | sum of deviations: -5205503080.750002
[2026-01-22 10:03:43] 2026-01-22 15:03:09,078 | INFO     | mean x: 1769089072.875
[2026-01-22 10:03:43] 2026-01-22 15:03:09,078 | INFO     | mean y: 2522641.5833333335
[2026-01-22 10:03:43] 2026-01-22 15:03:09,078 | INFO     | intersect: 6265560377.792597
[2026-01-22 10:03:43] 2026-01-22 15:03:09,078 | INFO     | chi2: 0.826257465259391
[2026-01-22 10:03:43] 2026-01-22 15:03:09,078 | INFO     | current chi2=0.826257465259391 (change=79.11041850963913 %)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,078 | INFO     | sum of square deviations: 1342946270.6502995
[2026-01-22 10:03:43] 2026-01-22 15:03:09,082 | INFO     | sum of deviations: -13145341715.858898
[2026-01-22 10:03:43] 2026-01-22 15:03:09,082 | INFO     | mean x: 1769089225.386503
[2026-01-22 10:03:43] 2026-01-22 15:03:09,082 | INFO     | mean y: 2532062.791411043
[2026-01-22 10:03:43] 2026-01-22 15:03:09,083 | INFO     | intersect: 17319146213.176384
[2026-01-22 10:03:43] 2026-01-22 15:03:09,083 | INFO     | chi2: 0.7213913305882642
[2026-01-22 10:03:43] 2026-01-22 15:03:09,083 | INFO     | current chi2=0.7213913305882642 (change=12.691701930729993 %)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,083 | INFO     | left removable region: 20
[2026-01-22 10:03:43] 2026-01-22 15:03:09,083 | INFO     | sum of square deviations: 985040113.5102042
[2026-01-22 10:03:43] 2026-01-22 15:03:09,084 | INFO     | sum of deviations: -2234199431.5918365
[2026-01-22 10:03:43] 2026-01-22 15:03:09,084 | INFO     | mean x: 1769089347.4081633
[2026-01-22 10:03:43] 2026-01-22 15:03:09,084 | INFO     | mean y: 2544468.6598639456
[2026-01-22 10:03:43] 2026-01-22 15:03:09,084 | INFO     | intersect: 4015069806.6683927
[2026-01-22 10:03:43] 2026-01-22 15:03:09,084 | INFO     | chi2: 0.010826344850994131
[2026-01-22 10:03:43] 2026-01-22 15:03:09,084 | INFO     | current memory leak: -2.27 B/s (using 147 data points, chi2=0.01)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | could have reported an average CPU frequency of 3048 MHz (9 samples)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | ..............................
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . Timing measurements:
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . get job = 0 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . initial setup = 4 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . payload setup = 29 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . stage-in = 0 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . payload execution = 10520 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . stage-out = 2 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | . log creation = 0 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,085 | INFO     | ..............................
[2026-01-22 10:03:43] 2026-01-22 15:03:09,163 | INFO     | time since job start (10613s) is within the limit (349056.0s)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,344 | INFO     | 
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | job summary report
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | --------------------------------------------------
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | PanDA job id: 6969263459
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | task id: 48215263
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | errors: (none)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | pilot state: finished 
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | transexitcode: 0
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | exeerrorcode: 0
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | exeerrordiag: 
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | exitcode: 0
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | exitmsg: OK
[2026-01-22 10:03:43] 2026-01-22 15:03:09,345 | INFO     | cpuconsumptiontime: 21268 s
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | nevents: 400
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | neventsw: 0
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | pid: 2257378
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | pgrp: 2257378
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | corecount: 8
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | event service: False
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | sizes: {0: 2283117, 1: 2283802, 2: 2284001, 13: 2284001, 23: 2284319, 24: 2284347, 10554: 2313401, 10558: 2322399, 10559: 2322455, 10570: 2322713}
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | --------------------------------------------------
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | 
[2026-01-22 10:03:43] 2026-01-22 15:03:09,346 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-22 10:03:43] 2026-01-22 15:03:09,420 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,420 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,420 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,420 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,420 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,422 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,422 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 10:03:43] 2026-01-22 15:03:09,422 | INFO     | job 6969263459 has completed (purged errors)
[2026-01-22 10:03:43] 2026-01-22 15:03:09,422 | INFO     | overall cleanup function is called
[2026-01-22 10:03:43] 2026-01-22 15:03:10,451 | INFO     | --- collectZombieJob: --- 10, [2257378]
[2026-01-22 10:03:43] 2026-01-22 15:03:10,452 | INFO     | zombie collector waiting for pid 2257378
[2026-01-22 10:03:43] 2026-01-22 15:03:10,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 10:03:43] 2026-01-22 15:03:10,452 | INFO     | collected zombie processes
[2026-01-22 10:03:43] 2026-01-22 15:03:10,452 | INFO     | will attempt to kill all subprocesses of pid=2257378
[2026-01-22 10:03:43] 2026-01-22 15:03:11,236 | INFO     | process IDs to be killed: [2257378] (in reverse order)
[2026-01-22 10:03:43] 2026-01-22 15:03:11,446 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 10:03:43] 2026-01-22 15:03:11,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 10:03:43] 2026-01-22 15:03:11,471 | INFO     | did not find any defunct processes belonging to 2257378
[2026-01-22 10:03:43] 2026-01-22 15:03:11,492 | INFO     | did not find any defunct processes belonging to 2257378
[2026-01-22 10:03:43] 2026-01-22 15:03:11,492 | INFO     | ready for new job
[2026-01-22 10:03:43] 2026-01-22 15:03:11,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 10:03:43] 2026-01-22 15:03:11,498 | INFO     | ***************************************
[2026-01-22 10:03:43] 2026-01-22 15:03:11,498 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-22 10:03:43] 2026-01-22 15:03:11,498 | INFO     | ***************************************
[2026-01-22 10:03:43] 2026-01-22 15:03:11,498 | INFO     | 
[2026-01-22 10:03:43] 2026-01-22 15:03:11,508 | INFO     | architecture information:
[2026-01-22 10:03:43] 2026-01-22 15:03:11,511 | INFO     | executing command: cat /etc/os-release
[2026-01-22 10:03:43] 2026-01-22 15:03:11,572 | INFO     | cat /etc/os-release:
[2026-01-22 10:03:43] NAME="CentOS Linux"
[2026-01-22 10:03:43] VERSION="7 (Core)"
[2026-01-22 10:03:43] ID="centos"
[2026-01-22 10:03:43] ID_LIKE="rhel fedora"
[2026-01-22 10:03:43] VERSION_ID="7"
[2026-01-22 10:03:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 10:03:43] ANSI_COLOR="0;31"
[2026-01-22 10:03:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 10:03:43] HOME_URL="https://www.centos.org/"
[2026-01-22 10:03:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 10:03:43] 
[2026-01-22 10:03:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 10:03:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 10:03:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 10:03:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 10:03:43] 
[2026-01-22 10:03:43] 2026-01-22 15:03:11,572 | INFO     | ***************************************
[2026-01-22 10:03:43] 2026-01-22 15:03:12,076 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-22 10:03:43] 2026-01-22 15:03:12,110 | INFO     | sufficient remaining disk space (126175150080 B)
[2026-01-22 10:03:43] 2026-01-22 15:03:12,110 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 10:03:43] 2026-01-22 15:03:12,111 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 10:03:43] 2026-01-22 15:03:12,111 | INFO     | update_server=False
[2026-01-22 10:03:43] 2026-01-22 15:03:12,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 10:03:43] 2026-01-22 15:03:12,228 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-22 10:03:43] 2026-01-22 15:03:12,229 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-22 10:03:43] 2026-01-22 15:03:12,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 10:03:43] 2026-01-22 15:03:12,229 | INFO     | will abort loop
[2026-01-22 10:03:43] 2026-01-22 15:03:12,526 | INFO     | all payload control threads have been joined
[2026-01-22 10:03:43] 2026-01-22 15:03:12,839 | INFO     | all job control threads have been joined
[2026-01-22 10:03:43] 2026-01-22 15:03:13,031 | INFO     | all data control threads have been joined
[2026-01-22 10:03:43] 2026-01-22 15:03:13,116 | INFO     | [job] retrieve thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:13,234 | INFO     | [job] job monitor thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:13,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 10:03:43] 2026-01-22 15:03:13,423 | INFO     | [data] copytool_in thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:13,532 | INFO     | [payload] control thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:13,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 10:03:43] 2026-01-22 15:03:13,845 | INFO     | [job] control thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:13,892 | INFO     | [payload] failed_post thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:13,931 | INFO     | [job] validate thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:14,037 | INFO     | [data] control thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:14,097 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:14,101 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:14,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 10:03:43] 2026-01-22 15:03:14,433 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:14,441 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:14,600 | INFO     | [payload] validate_post thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:15,303 | INFO     | [data] copytool_out thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:15,367 | INFO     | [job] queue monitor thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:17,560 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 10:03:43] 2026-01-22 15:03:34,470 | INFO     | [monitor] cgroup control has ended
[2026-01-22 10:03:43] 2026-01-22 15:03:35,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139879236822848)>', '<ExcThread(monitor, started 139878872368896)>']
[2026-01-22 10:03:43] 2026-01-22 15:03:40,507 | INFO     | all workflow threads have been joined
[2026-01-22 10:03:43] 2026-01-22 15:03:40,508 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 10:03:43] 2026-01-22 15:03:40,508 | INFO     | traces error code: 0
[2026-01-22 10:03:43] 2026-01-22 15:03:40,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 10:03:43] 2026-01-22 15:03:42,905 | INFO     | PID=2244697 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-22 10:03:43] 2026-01-22 15:03:42,905 | INFO     | .. there are 29 such processes running
[2026-01-22 10:03:43] 2026-01-22 15:03:42,906 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 10:03:43] 2026-01-22 15:03:42,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 10:03:43] 2026-01-22 15:03:42,906 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 10:03:43] 2026-01-22 15:03:42,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 10:03:43] 2026-01-22 15:03:42,906 | INFO     | [monitor] control thread has ended
[2026-01-22 10:03:43] 2026-01-22 15:03:43,089 [wrapper] ==== pilot stdout END ====
[2026-01-22 10:03:43] 2026-01-22 15:03:43,106 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 10:03:43] 2026-01-22 15:03:43,116 [wrapper] pilotpid: 2244697
[2026-01-22 10:03:43] 2026-01-22 15:03:43,122 [wrapper] Pilot exit status: 0
[2026-01-22 10:03:43] 2026-01-22 15:03:43,146 [wrapper] pandaids: 6969263459
[2026-01-22 10:03:43] 2026-01-22 15:03:43,271 [wrapper] cleanup supervisor_pilot 2896090 2244698
[2026-01-22 10:03:43] 2026-01-22 15:03:43,282 [wrapper] Test setup, not cleaning
[2026-01-22 10:03:43] 2026-01-22 15:03:43,285 [wrapper] apfmon messages muted
[2026-01-22 10:03:43] 2026-01-22 15:03:43,288 [wrapper] ==== wrapper stdout END ====
[2026-01-22 10:03:43] 2026-01-22 15:03:43,291 [wrapper] ==== wrapper stderr END ====
[2026-01-22 10:03:43]  *** Error codes and diagnostics ***
[2026-01-22 10:03:43]     "exeErrorCode": 0,
[2026-01-22 10:03:43]     "exeErrorDiag": "",
[2026-01-22 10:03:43]     "pilotErrorCode": 0,
[2026-01-22 10:03:43]     "pilotErrorDiag": "",
[2026-01-22 10:03:43]  *** Listing of results directory ***
[2026-01-22 10:03:43] total 735380
[2026-01-22 10:03:43] -rwx------. 1 boincer umatlas     36322 Jan 13 17:01 runpilot2-wrapper.sh
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 17:12 queuedata.json
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 17:12 pilot3.tar.gz
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas       100 Jan 22 07:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 10:03:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 22 07:05 run_atlas
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas       105 Jan 22 07:05 job.xml
[2026-01-22 10:03:43] -rw-r--r--. 2 boincer umatlas 598838229 Jan 22 07:05 EVNT.32794306._000159.pool.root.1
[2026-01-22 10:03:43] -rw-r--r--. 2 boincer umatlas     15847 Jan 22 07:05 start_atlas.sh
[2026-01-22 10:03:43] drwxrwx--x. 2 boincer umatlas      4096 Jan 22 07:05 shared
[2026-01-22 10:03:43] -rw-r--r--. 2 boincer umatlas    592396 Jan 22 07:05 input.tar.gz
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas         0 Jan 22 07:05 boinc_lockfile
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas      2505 Jan 22 07:05 pandaJob.out
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas        57 Jan 22 07:05 setup.sh.local
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas   1002771 Jan 22 07:06 agis_schedconf.cvmfs.json
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas   1516246 Jan 22 07:06 agis_ddmendpoints.agis.ALL.json
[2026-01-22 10:03:43] drwx------. 5 boincer umatlas      4096 Jan 22 07:06 pilot3
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas      6957 Jan 22 09:58 init_data.xml
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas 146675314 Jan 22 10:02 HITS.48215263._003959.pool.root.1
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas       531 Jan 22 10:02 boinc_task_state.xml
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas      1037 Jan 22 10:02 memory_monitor_summary.json
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas    400644 Jan 22 10:02 log.48215263._003959.job.log.tgz.1
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas      7773 Jan 22 10:03 heartbeat.json
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas      8192 Jan 22 10:03 boinc_mmap_file
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas        27 Jan 22 10:03 wrapper_checkpoint.txt
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas        95 Jan 22 10:03 pilot_heartbeat.json
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas       823 Jan 22 10:03 pilotlog.txt
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas   1395319 Jan 22 10:03 log.48215263._003959.job.log.1
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas       357 Jan 22 10:03 output.list
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas       620 Jan 22 10:03 runtime_log
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas   1812480 Jan 22 10:03 result.tar.gz
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas      9343 Jan 22 10:03 runtime_log.err
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas       654 Jan 22 10:03 iRZMDmBd1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkriKDmo5tjhm.diag
[2026-01-22 10:03:43] -rw-r--r--. 1 boincer umatlas     21396 Jan 22 10:03 stderr.txt
[2026-01-22 10:03:43] HITS file was successfully produced:
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas 146675314 Jan 22 10:02 shared/HITS.pool.root.1
[2026-01-22 10:03:43]  *** Contents of shared directory: ***
[2026-01-22 10:03:43] total 730420
[2026-01-22 10:03:43] -rw-r--r--. 2 boincer umatlas 598838229 Jan 22 07:05 ATLAS.root_0
[2026-01-22 10:03:43] -rw-r--r--. 2 boincer umatlas     15847 Jan 22 07:05 start_atlas.sh
[2026-01-22 10:03:43] -rw-r--r--. 2 boincer umatlas    592396 Jan 22 07:05 input.tar.gz
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas 146675314 Jan 22 10:02 HITS.pool.root.1
[2026-01-22 10:03:43] -rw-------. 1 boincer umatlas   1812480 Jan 22 10:03 result.tar.gz
10:03:44 (2238835): run_atlas exited; CPU time 21712.077856
10:03:44 (2238835): called boinc_finish(0)

</stderr_txt>
]]>

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