Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:22:05 (2025129): wrapper (7.7.26015): starting
00:22:05 (2025129): wrapper: running run_atlas (--nthreads 3)
[2026-01-23 00:22:05] Arguments: --nthreads 3
[2026-01-23 00:22:05] Threads: 3
[2026-01-23 00:22:05] Checking for CVMFS
[2026-01-23 00:22:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 00:22:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 00:22:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 00:22:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 00:22:05] 2.9.2.0 1599046 3349 90020 155415 0 49 16786434 36864000 0 130560 0 1312917 99.987 82377 14024 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-23 00:22:05] CVMFS is ok
[2026-01-23 00:22:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-23 00:22:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-23 00:22:05] Further information can be found at the LHC@home message board.
[2026-01-23 00:22:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 00:22:05] Checking for apptainer binary...
[2026-01-23 00:22:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 00:22:05] Running /usr/bin/apptainer --version
[2026-01-23 00:22:05] apptainer version 1.4.1-1.1
[2026-01-23 00:22:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 00:22:05] thA325a
[2026-01-23 00:22:05] apptainer works
[2026-01-23 00:22:05] Set ATHENA_PROC_NUMBER=3
[2026-01-23 00:22:05] Set ATHENA_CORE_NUMBER=3
[2026-01-23 00:22:06] Starting ATLAS job with PandaID=6978157454
[2026-01-23 00:22:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 01:40:36]  *** The last 200 lines of the pilot log: ***
[2026-01-23 01:40:36] 2026-01-23 00:40:05,091 | INFO     | did not find any defunct processes belonging to 2033589
[2026-01-23 01:40:36] 2026-01-23 00:40:05,092 | INFO     | did not find any defunct processes belonging to 2033589
[2026-01-23 01:40:36] 2026-01-23 00:40:05,092 | INFO     | ready for new job
[2026-01-23 01:40:36] 2026-01-23 00:40:05,092 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 01:40:36] 2026-01-23 00:40:05,093 | INFO     | **************************************
[2026-01-23 01:40:36] 2026-01-23 00:40:05,093 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 01:40:36] 2026-01-23 00:40:05,093 | INFO     | **************************************
[2026-01-23 01:40:36] 2026-01-23 00:40:05,093 | INFO     | 
[2026-01-23 01:40:36] 2026-01-23 00:40:05,094 | INFO     | architecture information:
[2026-01-23 01:40:36] 2026-01-23 00:40:05,094 | INFO     | executing command: cat /etc/os-release
[2026-01-23 01:40:36] 2026-01-23 00:40:05,102 | INFO     | cat /etc/os-release:
[2026-01-23 01:40:36] NAME="CentOS Linux"
[2026-01-23 01:40:36] VERSION="7 (Core)"
[2026-01-23 01:40:36] ID="centos"
[2026-01-23 01:40:36] ID_LIKE="rhel fedora"
[2026-01-23 01:40:36] VERSION_ID="7"
[2026-01-23 01:40:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 01:40:36] ANSI_COLOR="0;31"
[2026-01-23 01:40:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 01:40:36] HOME_URL="https://www.centos.org/"
[2026-01-23 01:40:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 01:40:36] 
[2026-01-23 01:40:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 01:40:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 01:40:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 01:40:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 01:40:36] 
[2026-01-23 01:40:36] 2026-01-23 00:40:05,102 | INFO     | **************************************
[2026-01-23 01:40:36] 2026-01-23 00:40:05,606 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 01:40:36] 2026-01-23 00:40:05,617 | INFO     | sufficient remaining disk space (241602396160 B)
[2026-01-23 01:40:36] 2026-01-23 00:40:05,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 01:40:36] 2026-01-23 00:40:05,617 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 01:40:36] 2026-01-23 00:40:05,618 | INFO     | update_server=False
[2026-01-23 01:40:36] 2026-01-23 00:40:05,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 01:40:36] 2026-01-23 00:40:05,618 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 01:40:36] 2026-01-23 00:40:05,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 01:40:36] 2026-01-23 00:40:06,242 | WARNING  | process 2033589 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 01:40:36] 2026-01-23 00:40:06,270 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 01:40:36] 2026-01-23 00:40:06,306 | INFO     | number of running child processes to parent process 2033589: 1
[2026-01-23 01:40:36] 2026-01-23 00:40:06,307 | INFO     | maximum number of monitored processes: 6
[2026-01-23 01:40:36] 2026-01-23 00:40:06,307 | INFO     | aborting job monitoring since job object (job id=6978157454) has expired
[2026-01-23 01:40:36] 2026-01-23 00:40:06,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 01:40:36] 2026-01-23 00:40:06,307 | INFO     | will abort loop
[2026-01-23 01:40:36] 2026-01-23 00:40:06,373 | INFO     | all job control threads have been joined
[2026-01-23 01:40:36] 2026-01-23 00:40:06,374 | INFO     | all data control threads have been joined
[2026-01-23 01:40:36] 2026-01-23 00:40:06,623 | INFO     | [job] retrieve thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:06,623 | INFO     | [job] queue monitor thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:06,687 | INFO     | [payload] validate_post thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:06,764 | INFO     | [data] copytool_in thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:07,004 | INFO     | all payload control threads have been joined
[2026-01-23 01:40:36] 2026-01-23 00:40:07,275 | INFO     | [payload] failed_post thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:07,312 | INFO     | [job] job monitor thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:07,379 | INFO     | [data] control thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:07,379 | INFO     | [job] control thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:07,624 | INFO     | [data] copytool_out thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:07,762 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:08,010 | INFO     | [payload] control thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:08,036 | INFO     | [job] validate thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:08,084 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:08,084 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:08,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 01:40:36] 2026-01-23 00:40:12,446 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:16,138 | INFO     | job.realtimelogging is not enabled
[2026-01-23 01:40:36] 2026-01-23 00:40:17,143 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 01:40:36] 2026-01-23 00:40:20,452 | INFO     | [monitor] cgroup control has ended
[2026-01-23 01:40:36] 2026-01-23 00:40:21,138 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405080762176)>', '<ExcThread(monitor, started 140404737427200)>']
[2026-01-23 01:40:36] 2026-01-23 00:40:26,160 | INFO     | all workflow threads have been joined
[2026-01-23 01:40:36] 2026-01-23 00:40:26,161 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 01:40:36] 2026-01-23 00:40:26,161 | INFO     | traces error code: 0
[2026-01-23 01:40:36] 2026-01-23 00:40:26,161 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 01:40:36] 2026-01-23 00:40:35,888 | INFO     | PID=2029170 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-23 01:40:36] 2026-01-23 00:40:35,888 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 01:40:36] 2026-01-23 00:40:35,889 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 01:40:36] 2026-01-23 00:40:35,889 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 01:40:36] 2026-01-23 00:40:35,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 01:40:36] 2026-01-23 00:40:35,889 | INFO     | [monitor] control thread has ended
[2026-01-23 01:40:36] 2026-01-23 00:40:35,934 [wrapper] ==== pilot stdout END ====
[2026-01-23 01:40:36] 2026-01-23 00:40:35,937 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 01:40:36] 2026-01-23 00:40:35,939 [wrapper] pilotpid: 2029170
[2026-01-23 01:40:36] 2026-01-23 00:40:35,941 [wrapper] Pilot exit status: 0
[2026-01-23 01:40:36] 2026-01-23 00:40:35,948 [wrapper] pandaids: 6978157454
[2026-01-23 01:40:36] 2026-01-23 00:40:35,964 [wrapper] cleanup supervisor_pilot 2038637 2029171
[2026-01-23 01:40:36] 2026-01-23 00:40:35,966 [wrapper] Test setup, not cleaning
[2026-01-23 01:40:36] 2026-01-23 00:40:35,968 [wrapper] apfmon messages muted
[2026-01-23 01:40:36] 2026-01-23 00:40:35,971 [wrapper] ==== wrapper stdout END ====
[2026-01-23 01:40:36] 2026-01-23 00:40:35,973 [wrapper] ==== wrapper stderr END ====
[2026-01-23 01:40:36]  *** Error codes and diagnostics ***
[2026-01-23 01:40:36]     "exeErrorCode": 0,
[2026-01-23 01:40:36]     "exeErrorDiag": "",
[2026-01-23 01:40:36]     "pilotErrorCode": 0,
[2026-01-23 01:40:36]     "pilotErrorDiag": "",
[2026-01-23 01:40:36]  *** Listing of results directory ***
[2026-01-23 01:40:36] total 467576
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc    584422 Jan 21 20:45 pilot3.tar.gz
[2026-01-23 01:40:36] -rwx------ 1 boinc boinc     36322 Jan 21 20:46 runpilot2-wrapper.sh
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc      5111 Jan 21 20:47 queuedata.json
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc       100 Jan 23 00:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 01:40:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 23 00:22 run_atlas
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc       105 Jan 23 00:22 job.xml
[2026-01-23 01:40:36] -rw-r--r-- 2 boinc boinc 276211724 Jan 23 00:22 EVNT.48313378._000005.pool.root.1
[2026-01-23 01:40:36] drwxrwx--x 2 boinc boinc      4096 Jan 23 00:22 shared
[2026-01-23 01:40:36] -rw-r--r-- 2 boinc boinc    597782 Jan 23 00:22 input.tar.gz
[2026-01-23 01:40:36] -rw-r--r-- 2 boinc boinc     15845 Jan 23 00:22 start_atlas.sh
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc         0 Jan 23 00:22 boinc_setup_complete
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc      6440 Jan 23 00:22 init_data.xml
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc         0 Jan 23 00:22 boinc_lockfile
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc      2625 Jan 23 00:22 pandaJob.out
[2026-01-23 01:40:36] -rw------- 1 boinc boinc   1003897 Jan 23 00:22 agis_schedconf.cvmfs.json
[2026-01-23 01:40:36] -rw------- 1 boinc boinc   1516246 Jan 23 00:22 agis_ddmendpoints.agis.ALL.json
[2026-01-23 01:40:36] -rw------- 1 boinc boinc       428 Jan 23 00:22 workernode_map.json
[2026-01-23 01:40:36] drwx------ 5 boinc boinc      4096 Jan 23 00:22 pilot3
[2026-01-23 01:40:36] -rw------- 1 boinc boinc 196769667 Jan 23 01:39 HITS.48313381._000069.pool.root.1
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc       529 Jan 23 01:39 boinc_task_state.xml
[2026-01-23 01:40:36] -rw------- 1 boinc boinc      1023 Jan 23 01:39 memory_monitor_summary.json
[2026-01-23 01:40:36] -rw------- 1 boinc boinc    257767 Jan 23 01:39 log.48313381._000069.job.log.tgz.1
[2026-01-23 01:40:36] -rw------- 1 boinc boinc      6309 Jan 23 01:40 heartbeat.json
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc        27 Jan 23 01:40 wrapper_checkpoint.txt
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc      8192 Jan 23 01:40 boinc_mmap_file
[2026-01-23 01:40:36] -rw------- 1 boinc boinc       747 Jan 23 01:40 pilotlog.txt
[2026-01-23 01:40:36] -rw------- 1 boinc boinc        95 Jan 23 01:40 pilot_heartbeat.json
[2026-01-23 01:40:36] -rw------- 1 boinc boinc    688354 Jan 23 01:40 log.48313381._000069.job.log.1
[2026-01-23 01:40:36] -rw------- 1 boinc boinc       357 Jan 23 01:40 output.list
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc       620 Jan 23 01:40 runtime_log
[2026-01-23 01:40:36] -rw------- 1 boinc boinc    962560 Jan 23 01:40 result.tar.gz
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc      8901 Jan 23 01:40 runtime_log.err
[2026-01-23 01:40:36] -rw------- 1 boinc boinc       658 Jan 23 01:40 R0FNDmqKt28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVUsKDmIxLjGn.diag
[2026-01-23 01:40:36] -rw-r--r-- 1 boinc boinc     10481 Jan 23 01:40 stderr.txt
[2026-01-23 01:40:36] HITS file was successfully produced:
[2026-01-23 01:40:36] -rw------- 1 boinc boinc 196769667 Jan 23 01:39 shared/HITS.pool.root.1
[2026-01-23 01:40:36]  *** Contents of shared directory: ***
[2026-01-23 01:40:36] total 463448
[2026-01-23 01:40:36] -rw-r--r-- 2 boinc boinc 276211724 Jan 23 00:22 ATLAS.root_0
[2026-01-23 01:40:36] -rw-r--r-- 2 boinc boinc    597782 Jan 23 00:22 input.tar.gz
[2026-01-23 01:40:36] -rw-r--r-- 2 boinc boinc     15845 Jan 23 00:22 start_atlas.sh
[2026-01-23 01:40:36] -rw------- 1 boinc boinc 196769667 Jan 23 01:39 HITS.pool.root.1
[2026-01-23 01:40:36] -rw------- 1 boinc boinc    962560 Jan 23 01:40 result.tar.gz
01:40:37 (2025129): run_atlas exited; CPU time 13400.055809
01:40:37 (2025129): called boinc_finish(0)

</stderr_txt>
]]>

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