Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:47:57 (1625227): wrapper (7.7.26015): starting
21:47:57 (1625227): wrapper: running run_atlas (--nthreads 2)
[2026-01-22 21:47:57] Arguments: --nthreads 2
[2026-01-22 21:47:57] Threads: 2
[2026-01-22 21:47:57] Checking for CVMFS
[2026-01-22 21:47:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 21:47:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 21:47:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 21:47:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 21:47:58] 2.9.2.0 1326838 2892 59684 155409 2 50 24595544 36864001 0 130560 0 895010 99.985 63994 6047 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-22 21:47:58] CVMFS is ok
[2026-01-22 21:47:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 21:47:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 21:47:58] Further information can be found at the LHC@home message board.
[2026-01-22 21:47:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 21:47:58] Checking for apptainer binary...
[2026-01-22 21:47:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 21:47:58] Running /usr/bin/apptainer --version
[2026-01-22 21:47:58] apptainer version 1.4.1-1.1
[2026-01-22 21:47:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 21:47:58] thA334a
[2026-01-22 21:47:58] apptainer works
[2026-01-22 21:47:58] Set ATHENA_PROC_NUMBER=2
[2026-01-22 21:47:58] Set ATHENA_CORE_NUMBER=2
[2026-01-22 21:47:58] Starting ATLAS job with PandaID=6978066499
[2026-01-22 21:47:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 01:16:36]  *** The last 200 lines of the pilot log: ***
[2026-01-23 01:16:36] 2026-01-23 00:16:03,543 | INFO     | job 6978066499 has completed (purged errors)
[2026-01-23 01:16:36] 2026-01-23 00:16:03,543 | INFO     | overall cleanup function is called
[2026-01-23 01:16:36] 2026-01-23 00:16:04,549 | INFO     | --- collectZombieJob: --- 10, [1633657]
[2026-01-23 01:16:36] 2026-01-23 00:16:04,549 | INFO     | zombie collector waiting for pid 1633657
[2026-01-23 01:16:36] 2026-01-23 00:16:04,550 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 01:16:36] 2026-01-23 00:16:04,550 | INFO     | collected zombie processes
[2026-01-23 01:16:36] 2026-01-23 00:16:04,550 | INFO     | will attempt to kill all subprocesses of pid=1633657
[2026-01-23 01:16:36] 2026-01-23 00:16:04,581 | INFO     | process IDs to be killed: [1633657] (in reverse order)
[2026-01-23 01:16:36] 2026-01-23 00:16:04,601 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 01:16:36] 2026-01-23 00:16:04,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 01:16:36] 2026-01-23 00:16:04,601 | INFO     | did not find any defunct processes belonging to 1633657
[2026-01-23 01:16:36] 2026-01-23 00:16:04,602 | INFO     | did not find any defunct processes belonging to 1633657
[2026-01-23 01:16:36] 2026-01-23 00:16:04,602 | INFO     | ready for new job
[2026-01-23 01:16:36] 2026-01-23 00:16:04,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 01:16:36] 2026-01-23 00:16:04,603 | INFO     | **************************************
[2026-01-23 01:16:36] 2026-01-23 00:16:04,603 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 01:16:36] 2026-01-23 00:16:04,603 | INFO     | **************************************
[2026-01-23 01:16:36] 2026-01-23 00:16:04,603 | INFO     | 
[2026-01-23 01:16:36] 2026-01-23 00:16:04,603 | INFO     | architecture information:
[2026-01-23 01:16:36] 2026-01-23 00:16:04,603 | INFO     | executing command: cat /etc/os-release
[2026-01-23 01:16:36] 2026-01-23 00:16:04,611 | INFO     | cat /etc/os-release:
[2026-01-23 01:16:36] NAME="CentOS Linux"
[2026-01-23 01:16:36] VERSION="7 (Core)"
[2026-01-23 01:16:36] ID="centos"
[2026-01-23 01:16:36] ID_LIKE="rhel fedora"
[2026-01-23 01:16:36] VERSION_ID="7"
[2026-01-23 01:16:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 01:16:36] ANSI_COLOR="0;31"
[2026-01-23 01:16:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 01:16:36] HOME_URL="https://www.centos.org/"
[2026-01-23 01:16:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 01:16:36] 
[2026-01-23 01:16:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 01:16:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 01:16:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 01:16:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 01:16:36] 
[2026-01-23 01:16:36] 2026-01-23 00:16:04,611 | INFO     | **************************************
[2026-01-23 01:16:36] 2026-01-23 00:16:05,115 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-23 01:16:36] 2026-01-23 00:16:05,127 | INFO     | sufficient remaining disk space (497910022144 B)
[2026-01-23 01:16:36] 2026-01-23 00:16:05,127 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 01:16:36] 2026-01-23 00:16:05,127 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 01:16:36] 2026-01-23 00:16:05,127 | INFO     | update_server=False
[2026-01-23 01:16:36] 2026-01-23 00:16:05,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 01:16:36] 2026-01-23 00:16:05,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 01:16:36] 2026-01-23 00:16:05,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 01:16:36] 2026-01-23 00:16:05,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 01:16:36] 2026-01-23 00:16:05,688 | INFO     | all data control threads have been joined
[2026-01-23 01:16:36] 2026-01-23 00:16:05,952 | INFO     | job.realtimelogging is not enabled
[2026-01-23 01:16:36] 2026-01-23 00:16:06,132 | INFO     | [job] retrieve thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,133 | INFO     | [job] queue monitor thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,192 | INFO     | all job control threads have been joined
[2026-01-23 01:16:36] 2026-01-23 00:16:06,276 | INFO     | [job] validate thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,291 | INFO     | all payload control threads have been joined
[2026-01-23 01:16:36] 2026-01-23 00:16:06,416 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,675 | INFO     | [data] copytool_in thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,694 | INFO     | [data] control thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,725 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,942 | INFO     | [payload] failed_post thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:06,957 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:07,197 | INFO     | [job] control thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:07,297 | INFO     | [payload] control thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:07,379 | INFO     | [data] copytool_out thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:07,396 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:07,462 | INFO     | [payload] validate_post thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:07,872 | WARNING  | process 1633657 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 01:16:36] 2026-01-23 00:16:07,894 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 01:16:36] 2026-01-23 00:16:07,921 | INFO     | number of running child processes to parent process 1633657: 1
[2026-01-23 01:16:36] 2026-01-23 00:16:07,921 | INFO     | maximum number of monitored processes: 6
[2026-01-23 01:16:36] 2026-01-23 00:16:07,921 | INFO     | aborting job monitoring since job object (job id=6978066499) has expired
[2026-01-23 01:16:36] 2026-01-23 00:16:07,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 01:16:36] 2026-01-23 00:16:07,921 | INFO     | will abort loop
[2026-01-23 01:16:36] 2026-01-23 00:16:08,927 | INFO     | [job] job monitor thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:09,134 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 01:16:36] 2026-01-23 00:16:29,821 | INFO     | [monitor] cgroup control has ended
[2026-01-23 01:16:36] 2026-01-23 00:16:31,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139840253519680)>', '<ExcThread(monitor, started 139839756293888)>']
[2026-01-23 01:16:36] 2026-01-23 00:16:34,900 | INFO     | PID=1629251 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-23 01:16:36] 2026-01-23 00:16:34,900 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 01:16:36] 2026-01-23 00:16:34,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 01:16:36] 2026-01-23 00:16:34,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 01:16:36] 2026-01-23 00:16:34,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 01:16:36] 2026-01-23 00:16:34,900 | INFO     | [monitor] control thread has ended
[2026-01-23 01:16:36] 2026-01-23 00:16:36,775 | INFO     | all workflow threads have been joined
[2026-01-23 01:16:36] 2026-01-23 00:16:36,776 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 01:16:36] 2026-01-23 00:16:36,776 | INFO     | traces error code: 0
[2026-01-23 01:16:36] 2026-01-23 00:16:36,777 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 01:16:36] 2026-01-23 00:16:36,820 [wrapper] ==== pilot stdout END ====
[2026-01-23 01:16:36] 2026-01-23 00:16:36,822 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 01:16:36] 2026-01-23 00:16:36,824 [wrapper] pilotpid: 1629251
[2026-01-23 01:16:36] 2026-01-23 00:16:36,826 [wrapper] Pilot exit status: 0
[2026-01-23 01:16:36] 2026-01-23 00:16:36,832 [wrapper] pandaids: 6978066499
[2026-01-23 01:16:36] 2026-01-23 00:16:36,843 [wrapper] cleanup supervisor_pilot 1640137 1629252
[2026-01-23 01:16:36] 2026-01-23 00:16:36,845 [wrapper] Test setup, not cleaning
[2026-01-23 01:16:36] 2026-01-23 00:16:36,847 [wrapper] apfmon messages muted
[2026-01-23 01:16:36] 2026-01-23 00:16:36,849 [wrapper] ==== wrapper stdout END ====
[2026-01-23 01:16:36] 2026-01-23 00:16:36,851 [wrapper] ==== wrapper stderr END ====
[2026-01-23 01:16:36]  *** Error codes and diagnostics ***
[2026-01-23 01:16:36]     "exeErrorCode": 0,
[2026-01-23 01:16:36]     "exeErrorDiag": "",
[2026-01-23 01:16:36]     "pilotErrorCode": 0,
[2026-01-23 01:16:36]     "pilotErrorDiag": "",
[2026-01-23 01:16:36]  *** Listing of results directory ***
[2026-01-23 01:16:36] total 641548
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc      5111 Jan 21 17:31 queuedata.json
[2026-01-23 01:16:36] -rwx------ 1 boinc boinc     36322 Jan 21 17:31 runpilot2-wrapper.sh
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc    584422 Jan 21 17:31 pilot3.tar.gz
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc       100 Jan 22 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 01:16:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 22 21:47 run_atlas
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc       105 Jan 22 21:47 job.xml
[2026-01-23 01:16:36] -rw-r--r-- 2 boinc boinc 319575462 Jan 22 21:47 EVNT.48312960._000003.pool.root.1
[2026-01-23 01:16:36] -rw-r--r-- 2 boinc boinc    597760 Jan 22 21:47 input.tar.gz
[2026-01-23 01:16:36] -rw-r--r-- 2 boinc boinc     15845 Jan 22 21:47 start_atlas.sh
[2026-01-23 01:16:36] drwxrwx--x 2 boinc boinc      4096 Jan 22 21:47 shared
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc         0 Jan 22 21:47 boinc_setup_complete
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc      6207 Jan 22 21:47 init_data.xml
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc         0 Jan 22 21:47 boinc_lockfile
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc      2625 Jan 22 21:47 pandaJob.out
[2026-01-23 01:16:36] -rw------- 1 boinc boinc   1003905 Jan 22 21:48 agis_schedconf.cvmfs.json
[2026-01-23 01:16:36] -rw------- 1 boinc boinc       419 Jan 22 21:48 workernode_map.json
[2026-01-23 01:16:36] drwx------ 5 boinc boinc      4096 Jan 22 21:48 pilot3
[2026-01-23 01:16:36] -rw------- 1 boinc boinc 329182981 Jan 23 01:15 HITS.48312962._000054.pool.root.1
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc       530 Jan 23 01:15 boinc_task_state.xml
[2026-01-23 01:16:36] -rw------- 1 boinc boinc      1015 Jan 23 01:15 memory_monitor_summary.json
[2026-01-23 01:16:36] -rw------- 1 boinc boinc   1516246 Jan 23 01:16 agis_ddmendpoints.agis.ALL.json
[2026-01-23 01:16:36] -rw------- 1 boinc boinc    367141 Jan 23 01:16 log.48312962._000054.job.log.tgz.1
[2026-01-23 01:16:36] -rw------- 1 boinc boinc      6286 Jan 23 01:16 heartbeat.json
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc      8192 Jan 23 01:16 boinc_mmap_file
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc        28 Jan 23 01:16 wrapper_checkpoint.txt
[2026-01-23 01:16:36] -rw------- 1 boinc boinc        95 Jan 23 01:16 pilot_heartbeat.json
[2026-01-23 01:16:36] -rw------- 1 boinc boinc      5344 Jan 23 01:16 pilotlog.txt
[2026-01-23 01:16:36] -rw------- 1 boinc boinc   1760806 Jan 23 01:16 log.48312962._000054.job.log.1
[2026-01-23 01:16:36] -rw------- 1 boinc boinc       357 Jan 23 01:16 output.list
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc       620 Jan 23 01:16 runtime_log
[2026-01-23 01:16:36] -rw------- 1 boinc boinc   2150400 Jan 23 01:16 result.tar.gz
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc      8902 Jan 23 01:16 runtime_log.err
[2026-01-23 01:16:36] -rw------- 1 boinc boinc       662 Jan 23 01:16 B6WKDmlIq28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrqyKDmWk3qRn.diag
[2026-01-23 01:16:36] -rw-r--r-- 1 boinc boinc     11535 Jan 23 01:16 stderr.txt
[2026-01-23 01:16:36] HITS file was successfully produced:
[2026-01-23 01:16:36] -rw------- 1 boinc boinc 329182981 Jan 23 01:15 shared/HITS.pool.root.1
[2026-01-23 01:16:36]  *** Contents of shared directory: ***
[2026-01-23 01:16:36] total 636264
[2026-01-23 01:16:36] -rw-r--r-- 2 boinc boinc 319575462 Jan 22 21:47 ATLAS.root_0
[2026-01-23 01:16:36] -rw-r--r-- 2 boinc boinc    597760 Jan 22 21:47 input.tar.gz
[2026-01-23 01:16:36] -rw-r--r-- 2 boinc boinc     15845 Jan 22 21:47 start_atlas.sh
[2026-01-23 01:16:36] -rw------- 1 boinc boinc 329182981 Jan 23 01:15 HITS.pool.root.1
[2026-01-23 01:16:36] -rw------- 1 boinc boinc   2150400 Jan 23 01:16 result.tar.gz
01:16:38 (1625227): run_atlas exited; CPU time 24570.683321
01:16:38 (1625227): called boinc_finish(0)

</stderr_txt>
]]>

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