Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
16:42:09 (355714): wrapper (7.7.26015): starting
16:42:09 (355714): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 16:42:09] Arguments: --nthreads 4
[2026-01-23 16:42:09] Threads: 4
[2026-01-23 16:42:09] Checking for CVMFS
[2026-01-23 16:42:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 16:42:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 16:42:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 16:42:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 16:42:10] 2.13.3.0 80730 5242 47308 155437 0 50 19340181 33554432 0 130560 0 2397672 99.989 144685 191 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-23 16:42:10] CVMFS is ok
[2026-01-23 16:42:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 16:42:10] Checking for apptainer binary...
[2026-01-23 16:42:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 16:42:10] Running /usr/bin/apptainer --version
[2026-01-23 16:42:10] apptainer version 1.4.5
[2026-01-23 16:42:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 16:42:10] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-23 16:42:10] apptainer works
[2026-01-23 16:42:10] Set ATHENA_PROC_NUMBER=4
[2026-01-23 16:42:10] Set ATHENA_CORE_NUMBER=4
[2026-01-23 16:42:10] Starting ATLAS job with PandaID=6978788508
[2026-01-23 16:42:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 17:37:29]  *** The last 200 lines of the pilot log: ***
[2026-01-23 17:37:29]  filetype=log
[2026-01-23 17:37:29]  guid=bea7088a-898d-4e14-a97a-a4cd682b179e
[2026-01-23 17:37:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-23 17:37:29]  is_altstaged=None
[2026-01-23 17:37:29]  is_tar=False
[2026-01-23 17:37:29]  lfn=log.48312938._000206.job.log.tgz.1
[2026-01-23 17:37:29]  mtime=0
[2026-01-23 17:37:29]  protocol_id=None
[2026-01-23 17:37:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-23 17:37:29]  replicas=None
[2026-01-23 17:37:29]  scope=mc23_13p6TeV
[2026-01-23 17:37:29]  status=None
[2026-01-23 17:37:29]  status_code=0
[2026-01-23 17:37:29]  storage_token=
[2026-01-23 17:37:29]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6978788508/log.48312938._000206.job.log.tgz.1
[2026-01-23 17:37:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/01/log.48312938._000206.job.log.tgz.1
[2026-01-23 17:37:29]  workdir=None
[2026-01-23 17:37:29] ]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,619 | INFO     | transferring file log.48312938._000206.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6978788508/log.48312938._000206.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-23 17:37:29] 2026-01-23 15:36:44,619 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6978788508/log.48312938._000206.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48312938._000206.job
[2026-01-23 17:37:29] 2026-01-23 15:36:44,628 | INFO     | adding to output.list: log.48312938._000206.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/01/log.48312938._000206.job.log.tg
[2026-01-23 17:37:29] 2026-01-23 15:36:44,628 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-23 17:37:29] 2026-01-23 15:36:44,628 | INFO     | summary of transferred files:
[2026-01-23 17:37:29] 2026-01-23 15:36:44,628 | INFO     |  -- lfn=log.48312938._000206.job.log.tgz.1, status_code=0, status=transferred
[2026-01-23 17:37:29] 2026-01-23 15:36:44,628 | INFO     | stage-out finished correctly
[2026-01-23 17:37:29] 2026-01-23 15:36:44,656 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-23 17:37:29] 2026-01-23 15:36:44,682 | INFO     | job 6978788508 has state=finished
[2026-01-23 17:37:29] 2026-01-23 15:36:44,682 | INFO     | preparing for final server update for job 6978788508 in state='finished'
[2026-01-23 17:37:29] 2026-01-23 15:36:44,682 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6978788508/jobReport.json
[2026-01-23 17:37:29] 2026-01-23 15:36:44,683 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-23 17:37:29] 2026-01-23 15:36:44,683 | INFO     | this job has now completed (state=finished)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,683 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,683 | INFO     | log transfer has been attempted: DONE
[2026-01-23 17:37:29] 2026-01-23 15:36:44,683 | INFO     | job 6978788508 has finished - writing final server update
[2026-01-23 17:37:29] 2026-01-23 15:36:44,683 | INFO     | total number of processed events: 400 (read)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,685 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6978788508/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,685 | INFO     | extracted standard info from prmon json
[2026-01-23 17:37:29] 2026-01-23 15:36:44,685 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 17:37:29] 2026-01-23 15:36:44,685 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 17:37:29] 2026-01-23 15:36:44,685 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | fitting pss+swap vs Time
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | sum of square deviations: 32179208.0
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | sum of deviations: -6529670763.0
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | mean x: 1769181061.0
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | mean y: 2550196.723404255
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | intersect: 358997397070.05286
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | chi2: 0.09089314027534462
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | current memory leak: -202.92 B/s (using 47 data points, chi2=0.09)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | could have reported an average CPU frequency of 4023 MHz (5 samples)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,686 | INFO     | ..............................
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . Timing measurements:
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . get job = 0 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . initial setup = 3 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . payload setup = 2 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . stage-in = 0 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . payload execution = 3249 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . stage-out = 0 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | . log creation = 0 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,687 | INFO     | ..............................
[2026-01-23 17:37:29] 2026-01-23 15:36:44,713 | INFO     | 
[2026-01-23 17:37:29] 2026-01-23 15:36:44,713 | INFO     | job summary report
[2026-01-23 17:37:29] 2026-01-23 15:36:44,713 | INFO     | --------------------------------------------------
[2026-01-23 17:37:29] 2026-01-23 15:36:44,713 | INFO     | PanDA job id: 6978788508
[2026-01-23 17:37:29] 2026-01-23 15:36:44,713 | INFO     | task id: 48312938
[2026-01-23 17:37:29] 2026-01-23 15:36:44,713 | INFO     | errors: (none)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,713 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | pilot state: finished 
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | transexitcode: 0
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | exeerrorcode: 0
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | exeerrordiag: 
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | exitcode: 0
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | exitmsg: OK
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | cpuconsumptiontime: 11883 s
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | nevents: 400
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | neventsw: 0
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | pid: 364175
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | pgrp: 364175
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | corecount: 4
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | event service: False
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | sizes: {0: 2284390, 10: 2284390, 3255: 2310094, 3257: 2319318}
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | --------------------------------------------------
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | 
[2026-01-23 17:37:29] 2026-01-23 15:36:44,714 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-23 17:37:29] 2026-01-23 15:36:44,723 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | job 6978788508 has completed (purged errors)
[2026-01-23 17:37:29] 2026-01-23 15:36:44,724 | INFO     | overall cleanup function is called
[2026-01-23 17:37:29] 2026-01-23 15:36:45,730 | INFO     | --- collectZombieJob: --- 10, [364175]
[2026-01-23 17:37:29] 2026-01-23 15:36:45,730 | INFO     | zombie collector waiting for pid 364175
[2026-01-23 17:37:29] 2026-01-23 15:36:45,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 17:37:29] 2026-01-23 15:36:45,730 | INFO     | collected zombie processes
[2026-01-23 17:37:29] 2026-01-23 15:36:45,730 | INFO     | will attempt to kill all subprocesses of pid=364175
[2026-01-23 17:37:29] 2026-01-23 15:36:45,818 | INFO     | process IDs to be killed: [364175] (in reverse order)
[2026-01-23 17:37:29] 2026-01-23 15:36:45,849 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 17:37:29] 2026-01-23 15:36:45,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 17:37:29] 2026-01-23 15:36:45,852 | INFO     | did not find any defunct processes belonging to 364175
[2026-01-23 17:37:29] 2026-01-23 15:36:45,854 | INFO     | did not find any defunct processes belonging to 364175
[2026-01-23 17:37:29] 2026-01-23 15:36:45,854 | INFO     | ready for new job
[2026-01-23 17:37:29] 2026-01-23 15:36:45,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 17:37:29] 2026-01-23 15:36:45,855 | INFO     | **************************************
[2026-01-23 17:37:29] 2026-01-23 15:36:45,855 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 17:37:29] 2026-01-23 15:36:45,855 | INFO     | **************************************
[2026-01-23 17:37:29] 2026-01-23 15:36:45,855 | INFO     | 
[2026-01-23 17:37:29] 2026-01-23 15:36:45,856 | INFO     | architecture information:
[2026-01-23 17:37:29] 2026-01-23 15:36:45,856 | INFO     | executing command: cat /etc/os-release
[2026-01-23 17:37:29] 2026-01-23 15:36:45,861 | INFO     | cat /etc/os-release:
[2026-01-23 17:37:29] NAME="CentOS Linux"
[2026-01-23 17:37:29] VERSION="7 (Core)"
[2026-01-23 17:37:29] ID="centos"
[2026-01-23 17:37:29] ID_LIKE="rhel fedora"
[2026-01-23 17:37:29] VERSION_ID="7"
[2026-01-23 17:37:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 17:37:29] ANSI_COLOR="0;31"
[2026-01-23 17:37:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 17:37:29] HOME_URL="https://www.centos.org/"
[2026-01-23 17:37:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 17:37:29] 
[2026-01-23 17:37:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 17:37:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 17:37:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 17:37:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 17:37:29] 
[2026-01-23 17:37:29] 2026-01-23 15:36:45,861 | INFO     | **************************************
[2026-01-23 17:37:29] 2026-01-23 15:36:46,362 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-23 17:37:29] 2026-01-23 15:36:46,369 | INFO     | sufficient remaining disk space (68555898880 B)
[2026-01-23 17:37:29] 2026-01-23 15:36:46,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 17:37:29] 2026-01-23 15:36:46,369 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 17:37:29] 2026-01-23 15:36:46,369 | INFO     | update_server=False
[2026-01-23 17:37:29] 2026-01-23 15:36:46,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 17:37:29] 2026-01-23 15:36:46,369 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 17:37:29] 2026-01-23 15:36:46,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 17:37:29] 2026-01-23 15:36:46,370 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-23 17:37:29] 2026-01-23 15:36:46,370 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 17:37:29] 2026-01-23 15:36:46,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 17:37:29] 2026-01-23 15:36:46,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 17:37:29] 2026-01-23 15:36:46,999 | INFO     | job.realtimelogging is not enabled
[2026-01-23 17:37:29] 2026-01-23 15:36:47,175 | INFO     | all data control threads have been joined
[2026-01-23 17:37:29] 2026-01-23 15:36:47,374 | INFO     | [job] retrieve thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:47,375 | INFO     | [job] queue monitor thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:47,410 | WARNING  | process 364175 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 17:37:29] 2026-01-23 15:36:47,471 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 17:37:29] 2026-01-23 15:36:47,548 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:47,563 | INFO     | number of running child processes to parent process 364175: 1
[2026-01-23 17:37:29] 2026-01-23 15:36:47,563 | INFO     | maximum number of monitored processes: 6
[2026-01-23 17:37:29] 2026-01-23 15:36:47,564 | INFO     | aborting job monitoring since job object (job id=6978788508) has expired
[2026-01-23 17:37:29] 2026-01-23 15:36:47,564 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 17:37:29] 2026-01-23 15:36:47,564 | INFO     | will abort loop
[2026-01-23 17:37:29] 2026-01-23 15:36:47,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 17:37:29] 2026-01-23 15:36:47,683 | INFO     | all payload control threads have been joined
[2026-01-23 17:37:29] 2026-01-23 15:36:47,725 | INFO     | all job control threads have been joined
[2026-01-23 17:37:29] 2026-01-23 15:36:47,774 | INFO     | [payload] validate_post thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,003 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,034 | INFO     | [payload] failed_post thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,043 | INFO     | [job] validate thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,129 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,133 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,181 | INFO     | [data] control thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,283 | INFO     | [data] copytool_in thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,569 | INFO     | [job] job monitor thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,688 | INFO     | [payload] control thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:48,730 | INFO     | [job] control thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:49,666 | INFO     | [data] copytool_out thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:36:50,375 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 17:37:29] 2026-01-23 15:37:21,874 | INFO     | [monitor] cgroup control has ended
[2026-01-23 17:37:29] 2026-01-23 15:37:23,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661113562944)>', '<ExcThread(monitor, started 139660768560896)>']
[2026-01-23 17:37:29] 2026-01-23 15:37:24,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 17:37:29] 2026-01-23 15:37:24,540 | INFO     | [monitor] control thread has ended
[2026-01-23 17:37:29] 2026-01-23 15:37:29,000 | INFO     | all workflow threads have been joined
[2026-01-23 17:37:29] 2026-01-23 15:37:29,001 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 17:37:29] 2026-01-23 15:37:29,001 | INFO     | traces error code: 0
[2026-01-23 17:37:29] 2026-01-23 15:37:29,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 17:37:29] 2026-01-23 15:37:29,047 [wrapper] ==== pilot stdout END ====
[2026-01-23 17:37:29] 2026-01-23 15:37:29,049 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 17:37:29] 2026-01-23 15:37:29,050 [wrapper] pilotpid: 359543
[2026-01-23 17:37:29] 2026-01-23 15:37:29,052 [wrapper] Pilot exit status: 0
[2026-01-23 17:37:29] 2026-01-23 15:37:29,057 [wrapper] pandaids: 6978788508
[2026-01-23 17:37:29] 2026-01-23 15:37:29,080 [wrapper] cleanup supervisor_pilot  398392 359544
[2026-01-23 17:37:29] 2026-01-23 15:37:29,081 [wrapper] Test setup, not cleaning
[2026-01-23 17:37:29] 2026-01-23 15:37:29,083 [wrapper] apfmon messages muted
[2026-01-23 17:37:29] 2026-01-23 15:37:29,084 [wrapper] ==== wrapper stdout END ====
[2026-01-23 17:37:29] 2026-01-23 15:37:29,086 [wrapper] ==== wrapper stderr END ====
[2026-01-23 17:37:29]  *** Error codes and diagnostics ***
[2026-01-23 17:37:29]     "exeErrorCode": 0,
[2026-01-23 17:37:29]     "exeErrorDiag": "",
[2026-01-23 17:37:29]     "pilotErrorCode": 0,
[2026-01-23 17:37:29]     "pilotErrorDiag": "",
[2026-01-23 17:37:29]  *** Listing of results directory ***
[2026-01-23 17:37:29] total 459280
[2026-01-23 17:37:29] -rw-r--r-- 1 ek ek    584422 Jan 21 23:48 pilot3.tar.gz
[2026-01-23 17:37:29] -rw-r--r-- 1 ek ek      5111 Jan 21 23:49 queuedata.json
[2026-01-23 17:37:29] -rwx------ 1 ek ek     36322 Jan 21 23:49 runpilot2-wrapper.sh
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek       100 Jan 23 16:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 17:37:29] -rwxr-xr-x 1 ek ek      7986 Jan 23 16:42 run_atlas
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek       105 Jan 23 16:42 job.xml
[2026-01-23 17:37:29] -rw-r--r-- 2 ek ek 278124504 Jan 23 16:42 EVNT.48312936._000011.pool.root.1
[2026-01-23 17:37:29] -rw-r--r-- 2 ek ek    597783 Jan 23 16:42 input.tar.gz
[2026-01-23 17:37:29] -rw-r--r-- 2 ek ek     15845 Jan 23 16:42 start_atlas.sh
[2026-01-23 17:37:29] drwxrwx--x 2 ek ek      4096 Jan 23 16:42 shared
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek         0 Jan 23 16:42 boinc_setup_complete
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek      9841 Jan 23 16:42 init_data.xml
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek         0 Jan 23 16:42 boinc_lockfile
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek      2638 Jan 23 16:42 pandaJob.out
[2026-01-23 17:37:29] -rw------- 1 ek ek        50 Jan 23 16:42 setup.sh.local
[2026-01-23 17:37:29] -rw------- 1 ek ek   1004230 Jan 23 16:42 agis_schedconf.cvmfs.json
[2026-01-23 17:37:29] -rw------- 1 ek ek   1516246 Jan 23 16:42 agis_ddmendpoints.agis.ALL.json
[2026-01-23 17:37:29] -rw------- 1 ek ek       433 Jan 23 16:42 workernode_map.json
[2026-01-23 17:37:29] drwx------ 5 ek ek      4096 Jan 23 16:42 pilot3
[2026-01-23 17:37:29] -rw------- 1 ek ek 186756723 Jan 23 17:36 HITS.48312938._000206.pool.root.1
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek       529 Jan 23 17:36 boinc_task_state.xml
[2026-01-23 17:37:29] -rw------- 1 ek ek        95 Jan 23 17:36 pilot_heartbeat.json
[2026-01-23 17:37:29] -rw------- 1 ek ek      1019 Jan 23 17:36 memory_monitor_summary.json
[2026-01-23 17:37:29] -rw------- 1 ek ek    240016 Jan 23 17:36 log.48312938._000206.job.log.tgz.1
[2026-01-23 17:37:29] -rw------- 1 ek ek      6311 Jan 23 17:36 heartbeat.json
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek      8192 Jan 23 17:37 boinc_mmap_file
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek        27 Jan 23 17:37 wrapper_checkpoint.txt
[2026-01-23 17:37:29] -rw------- 1 ek ek      5139 Jan 23 17:37 pilotlog.txt
[2026-01-23 17:37:29] -rw------- 1 ek ek    495451 Jan 23 17:37 log.48312938._000206.job.log.1
[2026-01-23 17:37:29] -rw------- 1 ek ek       357 Jan 23 17:37 output.list
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek       620 Jan 23 17:37 runtime_log
[2026-01-23 17:37:29] -rw------- 1 ek ek    757760 Jan 23 17:37 result.tar.gz
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek      9501 Jan 23 17:37 runtime_log.err
[2026-01-23 17:37:29] -rw------- 1 ek ek       659 Jan 23 17:37 1KtMDmMGv28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwdsKDmDjyVjm.diag
[2026-01-23 17:37:29] -rw-rw-r-- 1 ek ek     21008 Jan 23 17:37 stderr.txt
[2026-01-23 17:37:29] HITS file was successfully produced:
[2026-01-23 17:37:29] -rw------- 1 ek ek 186756723 Jan 23 17:36 shared/HITS.pool.root.1
[2026-01-23 17:37:29]  *** Contents of shared directory: ***
[2026-01-23 17:37:29] total 455336
[2026-01-23 17:37:29] -rw-r--r-- 2 ek ek 278124504 Jan 23 16:42 ATLAS.root_0
[2026-01-23 17:37:29] -rw-r--r-- 2 ek ek    597783 Jan 23 16:42 input.tar.gz
[2026-01-23 17:37:29] -rw-r--r-- 2 ek ek     15845 Jan 23 16:42 start_atlas.sh
[2026-01-23 17:37:29] -rw------- 1 ek ek 186756723 Jan 23 17:36 HITS.pool.root.1
[2026-01-23 17:37:29] -rw------- 1 ek ek    757760 Jan 23 17:37 result.tar.gz
17:37:30 (355714): run_atlas exited; CPU time 11914.047669
17:37:30 (355714): called boinc_finish(0)

</stderr_txt>
]]>

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