Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:31:16 (3730302): wrapper (7.7.26015): starting
12:31:16 (3730302): wrapper: running run_atlas (--nthreads 4)
[2026-01-22 12:31:16] Arguments: --nthreads 4
[2026-01-22 12:31:16] Threads: 4
[2026-01-22 12:31:16] Checking for CVMFS
[2026-01-22 12:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 12:31:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 12:31:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 12:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 12:31:17] 2.9.2.0 3269150 2577 100040 155392 2 253 33463703 36864001 0 130560 0 1385829 99.992 51985 11372 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-22 12:31:17] CVMFS is ok
[2026-01-22 12:31:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 12:31:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 12:31:17] Further information can be found at the LHC@home message board.
[2026-01-22 12:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 12:31:17] Checking for apptainer binary...
[2026-01-22 12:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 12:31:17] Running /usr/bin/apptainer --version
[2026-01-22 12:31:17] apptainer version 1.4.1-1.1
[2026-01-22 12:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 12:31:17] thA315b
[2026-01-22 12:31:17] apptainer works
[2026-01-22 12:31:17] Set ATHENA_PROC_NUMBER=4
[2026-01-22 12:31:17] Set ATHENA_CORE_NUMBER=4
[2026-01-22 12:31:17] Starting ATLAS job with PandaID=6977503995
[2026-01-22 12:31:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 13:28:51]  *** The last 200 lines of the pilot log: ***
[2026-01-22 13:28:51] 2026-01-22 12:28:20,064 | INFO     | --- collectZombieJob: --- 10, [3738933]
[2026-01-22 13:28:51] 2026-01-22 12:28:20,065 | INFO     | zombie collector waiting for pid 3738933
[2026-01-22 13:28:51] 2026-01-22 12:28:20,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 13:28:51] 2026-01-22 12:28:20,065 | INFO     | collected zombie processes
[2026-01-22 13:28:51] 2026-01-22 12:28:20,065 | INFO     | will attempt to kill all subprocesses of pid=3738933
[2026-01-22 13:28:51] 2026-01-22 12:28:20,110 | INFO     | process IDs to be killed: [3738933] (in reverse order)
[2026-01-22 13:28:51] 2026-01-22 12:28:20,137 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 13:28:51] 2026-01-22 12:28:20,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 13:28:51] 2026-01-22 12:28:20,139 | INFO     | did not find any defunct processes belonging to 3738933
[2026-01-22 13:28:51] 2026-01-22 12:28:20,140 | INFO     | did not find any defunct processes belonging to 3738933
[2026-01-22 13:28:51] 2026-01-22 12:28:20,140 | INFO     | ready for new job
[2026-01-22 13:28:51] 2026-01-22 12:28:20,140 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 13:28:51] 2026-01-22 12:28:20,141 | INFO     | **************************************
[2026-01-22 13:28:51] 2026-01-22 12:28:20,141 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 13:28:51] 2026-01-22 12:28:20,141 | INFO     | **************************************
[2026-01-22 13:28:51] 2026-01-22 12:28:20,141 | INFO     | 
[2026-01-22 13:28:51] 2026-01-22 12:28:20,141 | INFO     | architecture information:
[2026-01-22 13:28:51] 2026-01-22 12:28:20,141 | INFO     | executing command: cat /etc/os-release
[2026-01-22 13:28:51] 2026-01-22 12:28:20,151 | INFO     | cat /etc/os-release:
[2026-01-22 13:28:51] NAME="CentOS Linux"
[2026-01-22 13:28:51] VERSION="7 (Core)"
[2026-01-22 13:28:51] ID="centos"
[2026-01-22 13:28:51] ID_LIKE="rhel fedora"
[2026-01-22 13:28:51] VERSION_ID="7"
[2026-01-22 13:28:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 13:28:51] ANSI_COLOR="0;31"
[2026-01-22 13:28:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 13:28:51] HOME_URL="https://www.centos.org/"
[2026-01-22 13:28:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 13:28:51] 
[2026-01-22 13:28:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 13:28:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 13:28:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 13:28:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 13:28:51] 
[2026-01-22 13:28:51] 2026-01-22 12:28:20,151 | INFO     | **************************************
[2026-01-22 13:28:51] 2026-01-22 12:28:20,642 | WARNING  | process 3738933 can no longer be monitored (due to stat problems) - aborting
[2026-01-22 13:28:51] 2026-01-22 12:28:20,654 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-22 13:28:51] 2026-01-22 12:28:20,665 | INFO     | sufficient remaining disk space (327263715328 B)
[2026-01-22 13:28:51] 2026-01-22 12:28:20,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 13:28:51] 2026-01-22 12:28:20,665 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 13:28:51] 2026-01-22 12:28:20,665 | INFO     | update_server=False
[2026-01-22 13:28:51] 2026-01-22 12:28:20,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 13:28:51] 2026-01-22 12:28:20,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 13:28:51] 2026-01-22 12:28:20,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 13:28:51] 2026-01-22 12:28:20,680 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 13:28:51] 2026-01-22 12:28:20,720 | INFO     | number of running child processes to parent process 3738933: 1
[2026-01-22 13:28:51] 2026-01-22 12:28:20,720 | INFO     | maximum number of monitored processes: 6
[2026-01-22 13:28:51] 2026-01-22 12:28:20,720 | INFO     | aborting job monitoring since job object (job id=6977503995) has expired
[2026-01-22 13:28:51] 2026-01-22 12:28:20,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 13:28:51] 2026-01-22 12:28:20,720 | INFO     | will abort loop
[2026-01-22 13:28:51] 2026-01-22 12:28:21,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 13:28:51] 2026-01-22 12:28:21,435 | INFO     | all payload control threads have been joined
[2026-01-22 13:28:51] 2026-01-22 12:28:21,656 | INFO     | all job control threads have been joined
[2026-01-22 13:28:51] 2026-01-22 12:28:21,657 | INFO     | all data control threads have been joined
[2026-01-22 13:28:51] 2026-01-22 12:28:21,667 | INFO     | [job] retrieve thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:21,671 | INFO     | [job] queue monitor thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:21,726 | INFO     | [job] job monitor thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:21,726 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:21,821 | INFO     | [data] copytool_in thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:21,996 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:22,318 | INFO     | [payload] validate_post thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:22,437 | INFO     | [payload] control thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:22,662 | INFO     | [data] control thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:22,663 | INFO     | [job] control thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:22,737 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:23,058 | INFO     | [data] copytool_out thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:23,092 | INFO     | [job] validate thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:23,145 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:23,230 | INFO     | [payload] failed_post thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:24,672 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 13:28:51] 2026-01-22 12:28:32,210 | INFO     | [monitor] cgroup control has ended
[2026-01-22 13:28:51] 2026-01-22 12:28:34,268 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669831423808)>', '<ExcThread(monitor, started 139669475927808)>']
[2026-01-22 13:28:51] 2026-01-22 12:28:39,269 | INFO     | all workflow threads have been joined
[2026-01-22 13:28:51] 2026-01-22 12:28:39,269 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 13:28:51] 2026-01-22 12:28:39,269 | INFO     | traces error code: 0
[2026-01-22 13:28:51] 2026-01-22 12:28:39,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 13:28:51] 2026-01-22 12:28:51,706 | INFO     | PID=3734413 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-22 13:28:51] 2026-01-22 12:28:51,707 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 13:28:51] 2026-01-22 12:28:51,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 13:28:51] 2026-01-22 12:28:51,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 13:28:51] 2026-01-22 12:28:51,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 13:28:51] 2026-01-22 12:28:51,707 | INFO     | [monitor] control thread has ended
[2026-01-22 13:28:51] 2026-01-22 12:28:51,755 [wrapper] ==== pilot stdout END ====
[2026-01-22 13:28:51] 2026-01-22 12:28:51,757 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 13:28:51] 2026-01-22 12:28:51,760 [wrapper] pilotpid: 3734413
[2026-01-22 13:28:51] 2026-01-22 12:28:51,762 [wrapper] Pilot exit status: 0
[2026-01-22 13:28:51] 2026-01-22 12:28:51,770 [wrapper] pandaids: 6977503995
[2026-01-22 13:28:51] 2026-01-22 12:28:51,788 [wrapper] cleanup supervisor_pilot 3743686 3734414
[2026-01-22 13:28:51] 2026-01-22 12:28:51,790 [wrapper] Test setup, not cleaning
[2026-01-22 13:28:51] 2026-01-22 12:28:51,793 [wrapper] apfmon messages muted
[2026-01-22 13:28:51] 2026-01-22 12:28:51,796 [wrapper] ==== wrapper stdout END ====
[2026-01-22 13:28:51] 2026-01-22 12:28:51,798 [wrapper] ==== wrapper stderr END ====
[2026-01-22 13:28:51]  *** Error codes and diagnostics ***
[2026-01-22 13:28:51]     "exeErrorCode": 0,
[2026-01-22 13:28:51]     "exeErrorDiag": "",
[2026-01-22 13:28:51]     "pilotErrorCode": 0,
[2026-01-22 13:28:51]     "pilotErrorDiag": "",
[2026-01-22 13:28:51]  *** Listing of results directory ***
[2026-01-22 13:28:51] total 417584
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc    584422 Jan 22 03:30 pilot3.tar.gz
[2026-01-22 13:28:51] -rwx------ 1 boinc boinc     36322 Jan 22 03:30 runpilot2-wrapper.sh
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc      5111 Jan 22 03:32 queuedata.json
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc       100 Jan 22 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 13:28:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 22 12:31 run_atlas
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc       105 Jan 22 12:31 job.xml
[2026-01-22 13:28:51] -rw-r--r-- 2 boinc boinc 254493471 Jan 22 12:31 EVNT.48299531._000015.pool.root.1
[2026-01-22 13:28:51] -rw-r--r-- 2 boinc boinc    597778 Jan 22 12:31 input.tar.gz
[2026-01-22 13:28:51] -rw-r--r-- 2 boinc boinc     15845 Jan 22 12:31 start_atlas.sh
[2026-01-22 13:28:51] drwxrwx--x 2 boinc boinc      4096 Jan 22 12:31 shared
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc         0 Jan 22 12:31 boinc_setup_complete
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc      6443 Jan 22 12:31 init_data.xml
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc         0 Jan 22 12:31 boinc_lockfile
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc      2641 Jan 22 12:31 pandaJob.out
[2026-01-22 13:28:51] -rw------- 1 boinc boinc   1002771 Jan 22 12:31 agis_schedconf.cvmfs.json
[2026-01-22 13:28:51] -rw------- 1 boinc boinc   1516246 Jan 22 12:31 agis_ddmendpoints.agis.ALL.json
[2026-01-22 13:28:51] -rw------- 1 boinc boinc       424 Jan 22 12:31 workernode_map.json
[2026-01-22 13:28:51] drwx------ 5 boinc boinc      4096 Jan 22 12:31 pilot3
[2026-01-22 13:28:51] -rw------- 1 boinc boinc 167689350 Jan 22 13:28 HITS.48299533._000305.pool.root.1
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc       529 Jan 22 13:28 boinc_task_state.xml
[2026-01-22 13:28:51] -rw------- 1 boinc boinc      1013 Jan 22 13:28 memory_monitor_summary.json
[2026-01-22 13:28:51] -rw------- 1 boinc boinc    235685 Jan 22 13:28 log.48299533._000305.job.log.tgz.1
[2026-01-22 13:28:51] -rw------- 1 boinc boinc      6288 Jan 22 13:28 heartbeat.json
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc      8192 Jan 22 13:28 boinc_mmap_file
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc        27 Jan 22 13:28 wrapper_checkpoint.txt
[2026-01-22 13:28:51] -rw------- 1 boinc boinc       747 Jan 22 13:28 pilotlog.txt
[2026-01-22 13:28:51] -rw------- 1 boinc boinc        95 Jan 22 13:28 pilot_heartbeat.json
[2026-01-22 13:28:51] -rw------- 1 boinc boinc    515905 Jan 22 13:28 log.48299533._000305.job.log.1
[2026-01-22 13:28:51] -rw------- 1 boinc boinc       357 Jan 22 13:28 output.list
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc       620 Jan 22 13:28 runtime_log
[2026-01-22 13:28:51] -rw------- 1 boinc boinc    768000 Jan 22 13:28 result.tar.gz
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc      8901 Jan 22 13:28 runtime_log.err
[2026-01-22 13:28:51] -rw------- 1 boinc boinc       658 Jan 22 13:28 99zKDmQez28n9Rq4apOajLDm4fhM0noT9bVo0NGKDm26sKDmrjlYjn.diag
[2026-01-22 13:28:51] -rw-r--r-- 1 boinc boinc     11247 Jan 22 13:28 stderr.txt
[2026-01-22 13:28:51] HITS file was successfully produced:
[2026-01-22 13:28:51] -rw------- 1 boinc boinc 167689350 Jan 22 13:28 shared/HITS.pool.root.1
[2026-01-22 13:28:51]  *** Contents of shared directory: ***
[2026-01-22 13:28:51] total 413652
[2026-01-22 13:28:51] -rw-r--r-- 2 boinc boinc 254493471 Jan 22 12:31 ATLAS.root_0
[2026-01-22 13:28:51] -rw-r--r-- 2 boinc boinc    597778 Jan 22 12:31 input.tar.gz
[2026-01-22 13:28:51] -rw-r--r-- 2 boinc boinc     15845 Jan 22 12:31 start_atlas.sh
[2026-01-22 13:28:51] -rw------- 1 boinc boinc 167689350 Jan 22 13:28 HITS.pool.root.1
[2026-01-22 13:28:51] -rw------- 1 boinc boinc    768000 Jan 22 13:28 result.tar.gz
13:28:53 (3730302): run_atlas exited; CPU time 12738.923670
13:28:53 (3730302): called boinc_finish(0)

</stderr_txt>
]]>

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