Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
01:25:11 (3810453): wrapper (7.7.26015): starting
01:25:11 (3810453): wrapper: running run_atlas (--nthreads 4)
[2026-01-23 01:25:11] Arguments: --nthreads 4
[2026-01-23 01:25:11] Threads: 4
[2026-01-23 01:25:11] Checking for CVMFS
[2026-01-23 01:25:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-23 01:25:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-23 01:25:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-23 01:25:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-23 01:25:12] 2.13.3.0 80730 4325 34084 155415 2 50 19046500 33554432 0 130560 0 1998423 99.989 116943 186 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-23 01:25:12] CVMFS is ok
[2026-01-23 01:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-23 01:25:12] Checking for apptainer binary...
[2026-01-23 01:25:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-23 01:25:12] Running /usr/bin/apptainer --version
[2026-01-23 01:25:12] apptainer version 1.4.5
[2026-01-23 01:25:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-23 01:25:12] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-23 01:25:12] apptainer works
[2026-01-23 01:25:12] Set ATHENA_PROC_NUMBER=4
[2026-01-23 01:25:12] Set ATHENA_CORE_NUMBER=4
[2026-01-23 01:25:12] Starting ATLAS job with PandaID=6978066795
[2026-01-23 01:25:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 03:06:40]  *** The last 200 lines of the pilot log: ***
[2026-01-23 03:06:40]  guid=e18512cc-29ba-441c-950e-cbc6082cf4ce
[2026-01-23 03:06:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-23 03:06:40]  is_altstaged=None
[2026-01-23 03:06:40]  is_tar=False
[2026-01-23 03:06:40]  lfn=log.48312962._000186.job.log.tgz.1
[2026-01-23 03:06:40]  mtime=0
[2026-01-23 03:06:40]  protocol_id=None
[2026-01-23 03:06:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-23 03:06:40]  replicas=None
[2026-01-23 03:06:40]  scope=mc23_13p6TeV
[2026-01-23 03:06:40]  status=None
[2026-01-23 03:06:40]  status_code=0
[2026-01-23 03:06:40]  storage_token=
[2026-01-23 03:06:40]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6978066795/log.48312962._000186.job.log.tgz.1
[2026-01-23 03:06:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/95/log.48312962._000186.job.log.tgz.1
[2026-01-23 03:06:40]  workdir=None
[2026-01-23 03:06:40] ]
[2026-01-23 03:06:40] 2026-01-23 01:06:06,386 | INFO     | transferring file log.48312962._000186.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6978066795/log.48312962._000186.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-01-23 03:06:40] 2026-01-23 01:06:06,386 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6978066795/log.48312962._000186.job.log.tgz.1 /home/ek/BOINC/slots/1/log.48312962._000186.job
[2026-01-23 03:06:40] 2026-01-23 01:06:06,394 | INFO     | adding to output.list: log.48312962._000186.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e8/95/log.48312962._000186.job.log.tg
[2026-01-23 03:06:40] 2026-01-23 01:06:06,395 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-23 03:06:40] 2026-01-23 01:06:06,395 | INFO     | summary of transferred files:
[2026-01-23 03:06:40] 2026-01-23 01:06:06,395 | INFO     |  -- lfn=log.48312962._000186.job.log.tgz.1, status_code=0, status=transferred
[2026-01-23 03:06:40] 2026-01-23 01:06:06,395 | INFO     | stage-out finished correctly
[2026-01-23 03:06:40] 2026-01-23 01:06:07,677 | INFO     | time since job start (6044s) is within the limit (349056.0s)
[2026-01-23 03:06:40] 2026-01-23 01:06:08,183 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-23 03:06:40] 2026-01-23 01:06:09,279 | INFO     | job 6978066795 has state=finished
[2026-01-23 03:06:40] 2026-01-23 01:06:09,279 | INFO     | preparing for final server update for job 6978066795 in state='finished'
[2026-01-23 03:06:40] 2026-01-23 01:06:09,279 | INFO     | reading metadata from: /home/ek/BOINC/slots/1/PanDA_Pilot-6978066795/jobReport.json
[2026-01-23 03:06:40] 2026-01-23 01:06:09,280 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/1/workernode_map.json
[2026-01-23 03:06:40] 2026-01-23 01:06:09,281 | INFO     | this job has now completed (state=finished)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,281 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,281 | INFO     | log transfer has been attempted: DONE
[2026-01-23 03:06:40] 2026-01-23 01:06:09,281 | INFO     | job 6978066795 has finished - writing final server update
[2026-01-23 03:06:40] 2026-01-23 01:06:09,281 | INFO     | total number of processed events: 400 (read)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,283 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6978066795/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,283 | INFO     | extracted standard info from prmon json
[2026-01-23 03:06:40] 2026-01-23 01:06:09,283 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 03:06:40] 2026-01-23 01:06:09,283 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 03:06:40] 2026-01-23 01:06:09,283 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 03:06:40] 2026-01-23 01:06:09,283 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | fitting pss+swap vs Time
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | sum of square deviations: 241429643.0
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | sum of deviations: -24763936004.0
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | mean x: 1769127420.5
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | mean y: 2603701.7391304346
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | intersect: 181465648917.7054
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | chi2: 0.12282255837713452
[2026-01-23 03:06:40] 2026-01-23 01:06:09,284 | INFO     | current memory leak: -102.57 B/s (using 92 data points, chi2=0.12)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | could have reported an average CPU frequency of 4190 MHz (7 samples)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | ..............................
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . Timing measurements:
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . get job = 0 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . initial setup = 4 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . payload setup = 3 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . stage-in = 0 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . payload execution = 6025 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . stage-out = 0 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | . log creation = 0 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,285 | INFO     | ..............................
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | 
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | job summary report
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | --------------------------------------------------
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | PanDA job id: 6978066795
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | task id: 48312962
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | errors: (none)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | pilot state: finished 
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | transexitcode: 0
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | exeerrorcode: 0
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | exeerrordiag: 
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | exitcode: 0
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | exitmsg: OK
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | cpuconsumptiontime: 22856 s
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | nevents: 400
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | neventsw: 0
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | pid: 3818994
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | pgrp: 3818994
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | corecount: 4
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | event service: False
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | sizes: {0: 2284385, 10: 2284385, 6032: 2320379, 6034: 2320379, 6035: 2320573}
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | --------------------------------------------------
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | 
[2026-01-23 03:06:40] 2026-01-23 01:06:09,633 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,642 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | job 6978066795 has completed (purged errors)
[2026-01-23 03:06:40] 2026-01-23 01:06:09,643 | INFO     | overall cleanup function is called
[2026-01-23 03:06:40] 2026-01-23 01:06:10,649 | INFO     | --- collectZombieJob: --- 10, [3818994]
[2026-01-23 03:06:40] 2026-01-23 01:06:10,649 | INFO     | zombie collector waiting for pid 3818994
[2026-01-23 03:06:40] 2026-01-23 01:06:10,649 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 03:06:40] 2026-01-23 01:06:10,649 | INFO     | collected zombie processes
[2026-01-23 03:06:40] 2026-01-23 01:06:10,649 | INFO     | will attempt to kill all subprocesses of pid=3818994
[2026-01-23 03:06:40] 2026-01-23 01:06:10,742 | INFO     | process IDs to be killed: [3818994] (in reverse order)
[2026-01-23 03:06:40] 2026-01-23 01:06:10,775 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 03:06:40] 2026-01-23 01:06:10,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 03:06:40] 2026-01-23 01:06:10,778 | INFO     | did not find any defunct processes belonging to 3818994
[2026-01-23 03:06:40] 2026-01-23 01:06:10,780 | INFO     | did not find any defunct processes belonging to 3818994
[2026-01-23 03:06:40] 2026-01-23 01:06:10,780 | INFO     | ready for new job
[2026-01-23 03:06:40] 2026-01-23 01:06:10,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 03:06:40] 2026-01-23 01:06:10,781 | INFO     | **************************************
[2026-01-23 03:06:40] 2026-01-23 01:06:10,781 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 03:06:40] 2026-01-23 01:06:10,781 | INFO     | **************************************
[2026-01-23 03:06:40] 2026-01-23 01:06:10,781 | INFO     | 
[2026-01-23 03:06:40] 2026-01-23 01:06:10,782 | INFO     | architecture information:
[2026-01-23 03:06:40] 2026-01-23 01:06:10,782 | INFO     | executing command: cat /etc/os-release
[2026-01-23 03:06:40] 2026-01-23 01:06:10,788 | INFO     | cat /etc/os-release:
[2026-01-23 03:06:40] NAME="CentOS Linux"
[2026-01-23 03:06:40] VERSION="7 (Core)"
[2026-01-23 03:06:40] ID="centos"
[2026-01-23 03:06:40] ID_LIKE="rhel fedora"
[2026-01-23 03:06:40] VERSION_ID="7"
[2026-01-23 03:06:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 03:06:40] ANSI_COLOR="0;31"
[2026-01-23 03:06:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 03:06:40] HOME_URL="https://www.centos.org/"
[2026-01-23 03:06:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 03:06:40] 
[2026-01-23 03:06:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 03:06:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 03:06:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 03:06:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 03:06:40] 
[2026-01-23 03:06:40] 2026-01-23 01:06:10,789 | INFO     | **************************************
[2026-01-23 03:06:40] 2026-01-23 01:06:11,291 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-23 03:06:40] 2026-01-23 01:06:11,297 | INFO     | sufficient remaining disk space (66689433600 B)
[2026-01-23 03:06:40] 2026-01-23 01:06:11,297 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 03:06:40] 2026-01-23 01:06:11,298 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 03:06:40] 2026-01-23 01:06:11,298 | INFO     | update_server=False
[2026-01-23 03:06:40] 2026-01-23 01:06:11,298 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 03:06:40] 2026-01-23 01:06:11,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 03:06:40] 2026-01-23 01:06:11,387 | INFO     | all job control threads have been joined
[2026-01-23 03:06:40] 2026-01-23 01:06:11,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 03:06:40] 2026-01-23 01:06:12,066 | INFO     | all data control threads have been joined
[2026-01-23 03:06:40] 2026-01-23 01:06:12,128 | WARNING  | process 3818994 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 03:06:40] 2026-01-23 01:06:12,171 | INFO     | all payload control threads have been joined
[2026-01-23 03:06:40] 2026-01-23 01:06:12,185 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 03:06:40] 2026-01-23 01:06:12,279 | INFO     | number of running child processes to parent process 3818994: 1
[2026-01-23 03:06:40] 2026-01-23 01:06:12,279 | INFO     | maximum number of monitored processes: 6
[2026-01-23 03:06:40] 2026-01-23 01:06:12,279 | INFO     | aborting job monitoring since job object (job id=6978066795) has expired
[2026-01-23 03:06:40] 2026-01-23 01:06:12,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 03:06:40] 2026-01-23 01:06:12,279 | INFO     | will abort loop
[2026-01-23 03:06:40] 2026-01-23 01:06:12,303 | INFO     | [job] retrieve thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:12,303 | INFO     | [job] queue monitor thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:12,391 | INFO     | [job] control thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,071 | INFO     | [data] control thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,074 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,146 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,176 | INFO     | [payload] control thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,284 | INFO     | [job] job monitor thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,516 | INFO     | [payload] validate_post thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,589 | INFO     | [job] validate thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,649 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,699 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,724 | INFO     | [payload] failed_post thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,804 | INFO     | [data] copytool_in thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:13,939 | INFO     | [data] copytool_out thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:14,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 03:06:40] 2026-01-23 01:06:18,221 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 03:06:40] 2026-01-23 01:06:32,597 | INFO     | [monitor] cgroup control has ended
[2026-01-23 03:06:40] 2026-01-23 01:06:33,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140261561780032)>', '<ExcThread(monitor, started 140260939917056)>']
[2026-01-23 03:06:40] 2026-01-23 01:06:38,268 | INFO     | all workflow threads have been joined
[2026-01-23 03:06:40] 2026-01-23 01:06:38,268 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 03:06:40] 2026-01-23 01:06:38,268 | INFO     | traces error code: 0
[2026-01-23 03:06:40] 2026-01-23 01:06:38,268 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 03:06:40] 2026-01-23 01:06:39,734 | INFO     | 6050s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-23 03:06:40] 2026-01-23 01:06:40,844 | INFO     | PID=3814348 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-23 03:06:40] 2026-01-23 01:06:40,844 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 03:06:40] 2026-01-23 01:06:40,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 03:06:40] 2026-01-23 01:06:40,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 03:06:40] 2026-01-23 01:06:40,844 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 03:06:40] 2026-01-23 01:06:40,844 | INFO     | [monitor] control thread has ended
[2026-01-23 03:06:40] 2026-01-23 01:06:40,903 [wrapper] ==== pilot stdout END ====
[2026-01-23 03:06:40] 2026-01-23 01:06:40,905 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 03:06:40] 2026-01-23 01:06:40,906 [wrapper] pilotpid: 3814348
[2026-01-23 03:06:40] 2026-01-23 01:06:40,908 [wrapper] Pilot exit status: 0
[2026-01-23 03:06:40] 2026-01-23 01:06:40,913 [wrapper] pandaids: 6978066795
[2026-01-23 03:06:40] 2026-01-23 01:06:40,935 [wrapper] cleanup supervisor_pilot 3881966 3814349
[2026-01-23 03:06:40] 2026-01-23 01:06:40,936 [wrapper] Test setup, not cleaning
[2026-01-23 03:06:40] 2026-01-23 01:06:40,937 [wrapper] apfmon messages muted
[2026-01-23 03:06:40] 2026-01-23 01:06:40,939 [wrapper] ==== wrapper stdout END ====
[2026-01-23 03:06:40] 2026-01-23 01:06:40,940 [wrapper] ==== wrapper stderr END ====
[2026-01-23 03:06:40]  *** Error codes and diagnostics ***
[2026-01-23 03:06:40]     "exeErrorCode": 0,
[2026-01-23 03:06:40]     "exeErrorDiag": "",
[2026-01-23 03:06:40]     "pilotErrorCode": 0,
[2026-01-23 03:06:40]     "pilotErrorDiag": "",
[2026-01-23 03:06:40]  *** Listing of results directory ***
[2026-01-23 03:06:40] total 628648
[2026-01-23 03:06:40] -rw-r--r-- 1 ek ek    584422 Jan 21 18:33 pilot3.tar.gz
[2026-01-23 03:06:40] -rwx------ 1 ek ek     36322 Jan 21 18:35 runpilot2-wrapper.sh
[2026-01-23 03:06:40] -rw-r--r-- 1 ek ek      5111 Jan 21 18:36 queuedata.json
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek       100 Jan 23 01:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 03:06:40] -rwxr-xr-x 1 ek ek      7986 Jan 23 01:25 run_atlas
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek       105 Jan 23 01:25 job.xml
[2026-01-23 03:06:40] -rw-r--r-- 2 ek ek 317712685 Jan 23 01:25 EVNT.48312960._000008.pool.root.1
[2026-01-23 03:06:40] -rw-r--r-- 2 ek ek    597770 Jan 23 01:25 input.tar.gz
[2026-01-23 03:06:40] -rw-r--r-- 2 ek ek     15845 Jan 23 01:25 start_atlas.sh
[2026-01-23 03:06:40] drwxrwx--x 2 ek ek      4096 Jan 23 01:25 shared
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek         0 Jan 23 01:25 boinc_setup_complete
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek      9841 Jan 23 01:25 init_data.xml
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek         0 Jan 23 01:25 boinc_lockfile
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek      2627 Jan 23 01:25 pandaJob.out
[2026-01-23 03:06:40] -rw------- 1 ek ek        50 Jan 23 01:25 setup.sh.local
[2026-01-23 03:06:40] -rw------- 1 ek ek   1003897 Jan 23 01:25 agis_schedconf.cvmfs.json
[2026-01-23 03:06:40] -rw------- 1 ek ek   1516246 Jan 23 01:25 agis_ddmendpoints.agis.ALL.json
[2026-01-23 03:06:40] -rw------- 1 ek ek       432 Jan 23 01:25 workernode_map.json
[2026-01-23 03:06:40] drwx------ 5 ek ek      4096 Jan 23 01:25 pilot3
[2026-01-23 03:06:40] -rw------- 1 ek ek 319694175 Jan 23 03:05 HITS.48312962._000186.pool.root.1
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek       529 Jan 23 03:05 boinc_task_state.xml
[2026-01-23 03:06:40] -rw------- 1 ek ek      1048 Jan 23 03:06 memory_monitor_summary.json
[2026-01-23 03:06:40] -rw------- 1 ek ek        95 Jan 23 03:06 pilot_heartbeat.json
[2026-01-23 03:06:40] -rw------- 1 ek ek    322208 Jan 23 03:06 log.48312962._000186.job.log.tgz.1
[2026-01-23 03:06:40] -rw------- 1 ek ek      6362 Jan 23 03:06 heartbeat.json
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek      8192 Jan 23 03:06 boinc_mmap_file
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek        27 Jan 23 03:06 wrapper_checkpoint.txt
[2026-01-23 03:06:40] -rw------- 1 ek ek       862 Jan 23 03:06 pilotlog.txt
[2026-01-23 03:06:40] -rw------- 1 ek ek    871687 Jan 23 03:06 log.48312962._000186.job.log.1
[2026-01-23 03:06:40] -rw------- 1 ek ek       357 Jan 23 03:06 output.list
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek       620 Jan 23 03:06 runtime_log
[2026-01-23 03:06:40] -rw------- 1 ek ek   1208320 Jan 23 03:06 result.tar.gz
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek      9501 Jan 23 03:06 runtime_log.err
[2026-01-23 03:06:40] -rw------- 1 ek ek       667 Jan 23 03:06 c3JODmsLq28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZvyKDms07vIm.diag
[2026-01-23 03:06:40] -rw-rw-r-- 1 ek ek     21244 Jan 23 03:06 stderr.txt
[2026-01-23 03:06:40] HITS file was successfully produced:
[2026-01-23 03:06:40] -rw------- 1 ek ek 319694175 Jan 23 03:05 shared/HITS.pool.root.1
[2026-01-23 03:06:40]  *** Contents of shared directory: ***
[2026-01-23 03:06:40] total 624260
[2026-01-23 03:06:40] -rw-r--r-- 2 ek ek 317712685 Jan 23 01:25 ATLAS.root_0
[2026-01-23 03:06:40] -rw-r--r-- 2 ek ek    597770 Jan 23 01:25 input.tar.gz
[2026-01-23 03:06:40] -rw-r--r-- 2 ek ek     15845 Jan 23 01:25 start_atlas.sh
[2026-01-23 03:06:40] -rw------- 1 ek ek 319694175 Jan 23 03:05 HITS.pool.root.1
[2026-01-23 03:06:40] -rw------- 1 ek ek   1208320 Jan 23 03:06 result.tar.gz
03:06:42 (3810453): run_atlas exited; CPU time 22914.900319
03:06:42 (3810453): called boinc_finish(0)

</stderr_txt>
]]>

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