Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
23:33:41 (3625017): wrapper (7.7.26015): starting
23:33:41 (3625017): wrapper: running run_atlas (--nthreads 4)
[2026-01-22 23:33:41] Arguments: --nthreads 4
[2026-01-22 23:33:41] Threads: 4
[2026-01-22 23:33:41] Checking for CVMFS
[2026-01-22 23:33:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 23:33:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 23:33:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 23:33:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 23:33:41] 2.13.3.0 80730 4214 49264 155410 0 50 19005958 33554432 0 130560 0 1958213 99.990 109070 185 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-01-22 23:33:41] CVMFS is ok
[2026-01-22 23:33:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 23:33:41] Checking for apptainer binary...
[2026-01-22 23:33:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 23:33:41] Running /usr/bin/apptainer --version
[2026-01-22 23:33:41] apptainer version 1.4.5
[2026-01-22 23:33:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 23:33:41] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-01-22 23:33:41] apptainer works
[2026-01-22 23:33:41] Set ATHENA_PROC_NUMBER=4
[2026-01-22 23:33:41] Set ATHENA_CORE_NUMBER=4
[2026-01-22 23:33:41] Starting ATLAS job with PandaID=6978089649
[2026-01-22 23:33:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-23 01:25:06]  *** The last 200 lines of the pilot log: ***
[2026-01-23 01:25:06] 2026-01-22 23:24:16,203 | INFO     | extracted standard info from prmon json
[2026-01-23 01:25:06] 2026-01-22 23:24:16,203 | INFO     | extracted standard memory fields from prmon json
[2026-01-23 01:25:06] 2026-01-22 23:24:16,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-23 01:25:06] 2026-01-22 23:24:16,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-23 01:25:06] 2026-01-22 23:24:16,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-23 01:25:06] 2026-01-22 23:24:16,204 | INFO     | fitting pss+swap vs Time
[2026-01-23 01:25:06] 2026-01-22 23:24:16,204 | INFO     | sum of square deviations: 401533110.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | sum of deviations: -19814322804.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | mean x: 1769120940.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | mean y: 2481187.4954128442
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | intersect: 87302712504.59879
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | chi2: 2.4661704781619926
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | sum of square deviations: 348769330.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | sum of deviations: -11642732334.499998
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | mean x: 1769120787.5
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | mean y: 2504130.0673076925
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | intersect: 59059875362.40115
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | chi2: 1.8271601806061377
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | current chi2=1.8271601806061377 (change=25.911035072972798 %)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | sum of square deviations: 300842850.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | sum of deviations: -9983931671.000002
[2026-01-23 01:25:06] 2026-01-22 23:24:16,205 | INFO     | mean x: 1769120635.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | mean y: 2509405.868686869
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | intersect: 58713492690.318146
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | chi2: 1.827624026443275
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | current chi2=1.827624026443275 (change=-0.025386161654609128 %)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | right removable region: 98
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | sum of square deviations: 348769330.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | sum of deviations: -34710272338.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | mean x: 1769121092.5
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | mean y: 2523076.346153846
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | intersect: 176069251534.30743
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | chi2: 0.878681999314197
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | current chi2=0.878681999314197 (change=64.37058966138189 %)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | sum of square deviations: 300842850.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | sum of deviations: -30372851356.000008
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | mean x: 1769121245.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | mean y: 2509244.414141414
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | intersect: 178611562459.8277
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | chi2: 0.8795705679709358
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | current chi2=0.8795705679709358 (change=-0.10112516899541904 %)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,206 | INFO     | left removable region: 20
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | sum of square deviations: 147126479.5
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | sum of deviations: -12570930020.0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | mean x: 1769121214.5
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | mean y: 2508839.6923076925
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | intersect: 151161559609.86255
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | chi2: 0.17316544137564996
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | current memory leak: -85.44 B/s (using 78 data points, chi2=0.17)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | could have reported an average CPU frequency of 3856 MHz (7 samples)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | ..............................
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . Timing measurements:
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . get job = 0 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . initial setup = 3 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . payload setup = 2 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . stage-in = 0 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . payload execution = 6607 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . stage-out = 0 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | . log creation = 0 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,207 | INFO     | ..............................
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | 
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | job summary report
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | --------------------------------------------------
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | PanDA job id: 6978089649
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | task id: 48313436
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | errors: (none)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | pilot state: finished 
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | transexitcode: 0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | exeerrorcode: 0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | exeerrordiag: 
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | exitcode: 0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | exitmsg: OK
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | cpuconsumptiontime: 25277 s
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | nevents: 400
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | neventsw: 0
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | pid: 3633655
[2026-01-23 01:25:06] 2026-01-22 23:24:16,234 | INFO     | pgrp: 3633655
[2026-01-23 01:25:06] 2026-01-22 23:24:16,235 | INFO     | corecount: 4
[2026-01-23 01:25:06] 2026-01-22 23:24:16,235 | INFO     | event service: False
[2026-01-23 01:25:06] 2026-01-22 23:24:16,235 | INFO     | sizes: {0: 2284365, 10: 2284365, 6614: 2311677, 6615: 2320731, 6616: 2320869}
[2026-01-23 01:25:06] 2026-01-22 23:24:16,235 | INFO     | --------------------------------------------------
[2026-01-23 01:25:06] 2026-01-22 23:24:16,235 | INFO     | 
[2026-01-23 01:25:06] 2026-01-22 23:24:16,235 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | job 6978089649 has completed (purged errors)
[2026-01-23 01:25:06] 2026-01-22 23:24:16,246 | INFO     | overall cleanup function is called
[2026-01-23 01:25:06] 2026-01-22 23:24:17,253 | INFO     | --- collectZombieJob: --- 10, [3633655]
[2026-01-23 01:25:06] 2026-01-22 23:24:17,253 | INFO     | zombie collector waiting for pid 3633655
[2026-01-23 01:25:06] 2026-01-22 23:24:17,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-23 01:25:06] 2026-01-22 23:24:17,253 | INFO     | collected zombie processes
[2026-01-23 01:25:06] 2026-01-22 23:24:17,253 | INFO     | will attempt to kill all subprocesses of pid=3633655
[2026-01-23 01:25:06] 2026-01-22 23:24:17,354 | INFO     | process IDs to be killed: [3633655] (in reverse order)
[2026-01-23 01:25:06] 2026-01-22 23:24:17,387 | WARNING  | found no corresponding commands to process id(s)
[2026-01-23 01:25:06] 2026-01-22 23:24:17,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-23 01:25:06] 2026-01-22 23:24:17,389 | INFO     | did not find any defunct processes belonging to 3633655
[2026-01-23 01:25:06] 2026-01-22 23:24:17,392 | INFO     | did not find any defunct processes belonging to 3633655
[2026-01-23 01:25:06] 2026-01-22 23:24:17,392 | INFO     | ready for new job
[2026-01-23 01:25:06] 2026-01-22 23:24:17,392 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-23 01:25:06] 2026-01-22 23:24:17,392 | INFO     | **************************************
[2026-01-23 01:25:06] 2026-01-22 23:24:17,392 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-23 01:25:06] 2026-01-22 23:24:17,392 | INFO     | **************************************
[2026-01-23 01:25:06] 2026-01-22 23:24:17,392 | INFO     | 
[2026-01-23 01:25:06] 2026-01-22 23:24:17,393 | INFO     | architecture information:
[2026-01-23 01:25:06] 2026-01-22 23:24:17,393 | INFO     | executing command: cat /etc/os-release
[2026-01-23 01:25:06] 2026-01-22 23:24:17,401 | INFO     | cat /etc/os-release:
[2026-01-23 01:25:06] NAME="CentOS Linux"
[2026-01-23 01:25:06] VERSION="7 (Core)"
[2026-01-23 01:25:06] ID="centos"
[2026-01-23 01:25:06] ID_LIKE="rhel fedora"
[2026-01-23 01:25:06] VERSION_ID="7"
[2026-01-23 01:25:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-23 01:25:06] ANSI_COLOR="0;31"
[2026-01-23 01:25:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-23 01:25:06] HOME_URL="https://www.centos.org/"
[2026-01-23 01:25:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-23 01:25:06] 
[2026-01-23 01:25:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-23 01:25:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-23 01:25:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-23 01:25:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-23 01:25:06] 
[2026-01-23 01:25:06] 2026-01-22 23:24:17,402 | INFO     | **************************************
[2026-01-23 01:25:06] 2026-01-22 23:24:17,904 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2026-01-23 01:25:06] 2026-01-22 23:24:17,912 | INFO     | sufficient remaining disk space (69956796416 B)
[2026-01-23 01:25:06] 2026-01-22 23:24:17,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-23 01:25:06] 2026-01-22 23:24:17,912 | INFO     | current server update state: UPDATING_FINAL
[2026-01-23 01:25:06] 2026-01-22 23:24:17,912 | INFO     | update_server=False
[2026-01-23 01:25:06] 2026-01-22 23:24:17,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-23 01:25:06] 2026-01-22 23:24:17,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-23 01:25:06] 2026-01-22 23:24:17,969 | INFO     | all job control threads have been joined
[2026-01-23 01:25:06] 2026-01-22 23:24:18,023 | INFO     | all payload control threads have been joined
[2026-01-23 01:25:06] 2026-01-22 23:24:18,312 | INFO     | all data control threads have been joined
[2026-01-23 01:25:06] 2026-01-22 23:24:18,318 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-23 01:25:06] 2026-01-22 23:24:18,917 | INFO     | [job] retrieve thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:18,918 | INFO     | [job] queue monitor thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:18,974 | INFO     | [job] control thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:19,028 | INFO     | [payload] control thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:19,317 | INFO     | [data] control thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:19,323 | INFO     | [payload] execute_payloads thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:19,355 | WARNING  | process 3633655 can no longer be monitored (due to stat problems) - aborting
[2026-01-23 01:25:06] 2026-01-22 23:24:19,418 | INFO     | using path: /home/ek/BOINC/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-01-23 01:25:06] 2026-01-22 23:24:19,509 | INFO     | number of running child processes to parent process 3633655: 1
[2026-01-23 01:25:06] 2026-01-22 23:24:19,509 | INFO     | maximum number of monitored processes: 6
[2026-01-23 01:25:06] 2026-01-22 23:24:19,509 | INFO     | aborting job monitoring since job object (job id=6978089649) has expired
[2026-01-23 01:25:06] 2026-01-22 23:24:19,509 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-23 01:25:06] 2026-01-22 23:24:19,509 | INFO     | will abort loop
[2026-01-23 01:25:06] 2026-01-22 23:24:19,649 | INFO     | [payload] validate_post thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:19,769 | INFO     | [job] validate thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:19,893 | INFO     | [job] create_data_payload thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:19,947 | INFO     | [payload] validate_pre thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:20,005 | INFO     | [data] copytool_in thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:20,323 | INFO     | [data] copytool_out thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:20,346 | INFO     | [payload] failed_post thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:20,515 | INFO     | [job] job monitor thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:21,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-23 01:25:06] 2026-01-22 23:24:25,411 | INFO     | [data] queue_monitor thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:28,539 | INFO     | job.realtimelogging is not enabled
[2026-01-23 01:25:06] 2026-01-22 23:24:29,539 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-23 01:25:06] 2026-01-22 23:24:48,078 | INFO     | PID=3628846 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-23 01:25:06] 2026-01-22 23:24:48,078 | INFO     | found 0 job(s) in 20 queues
[2026-01-23 01:25:06] 2026-01-22 23:24:48,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-23 01:25:06] 2026-01-22 23:24:48,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-23 01:25:06] 2026-01-22 23:24:59,961 | INFO     | [monitor] cgroup control has ended
[2026-01-23 01:25:06] 2026-01-22 23:25:01,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072388040512)>', '<ExcThread(monitor, started 140071609026304)>']
[2026-01-23 01:25:06] 2026-01-22 23:25:02,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-23 01:25:06] 2026-01-22 23:25:02,147 | INFO     | [monitor] control thread has ended
[2026-01-23 01:25:06] 2026-01-22 23:25:06,417 | INFO     | all workflow threads have been joined
[2026-01-23 01:25:06] 2026-01-22 23:25:06,417 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-23 01:25:06] 2026-01-22 23:25:06,417 | INFO     | traces error code: 0
[2026-01-23 01:25:06] 2026-01-22 23:25:06,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-23 01:25:06] 2026-01-22 23:25:06,485 [wrapper] ==== pilot stdout END ====
[2026-01-23 01:25:06] 2026-01-22 23:25:06,486 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-23 01:25:06] 2026-01-22 23:25:06,488 [wrapper] pilotpid: 3628846
[2026-01-23 01:25:06] 2026-01-22 23:25:06,489 [wrapper] Pilot exit status: 0
[2026-01-23 01:25:06] 2026-01-22 23:25:06,496 [wrapper] pandaids: 6978089649
[2026-01-23 01:25:06] 2026-01-22 23:25:06,519 [wrapper] cleanup supervisor_pilot 3805928 3628847
[2026-01-23 01:25:06] 2026-01-22 23:25:06,521 [wrapper] Test setup, not cleaning
[2026-01-23 01:25:06] 2026-01-22 23:25:06,522 [wrapper] apfmon messages muted
[2026-01-23 01:25:06] 2026-01-22 23:25:06,524 [wrapper] ==== wrapper stdout END ====
[2026-01-23 01:25:06] 2026-01-22 23:25:06,526 [wrapper] ==== wrapper stderr END ====
[2026-01-23 01:25:06]  *** Error codes and diagnostics ***
[2026-01-23 01:25:06]     "exeErrorCode": 0,
[2026-01-23 01:25:06]     "exeErrorDiag": "",
[2026-01-23 01:25:06]     "pilotErrorCode": 0,
[2026-01-23 01:25:06]     "pilotErrorDiag": "",
[2026-01-23 01:25:06]  *** Listing of results directory ***
[2026-01-23 01:25:06] total 610236
[2026-01-23 01:25:06] -rw-r--r-- 1 ek ek    584422 Jan 21 18:31 pilot3.tar.gz
[2026-01-23 01:25:06] -rwx------ 1 ek ek     36322 Jan 21 18:32 runpilot2-wrapper.sh
[2026-01-23 01:25:06] -rw-r--r-- 1 ek ek      5111 Jan 21 18:32 queuedata.json
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek       100 Jan 22 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-23 01:25:06] -rwxr-xr-x 1 ek ek      7986 Jan 22 23:33 run_atlas
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek       105 Jan 22 23:33 job.xml
[2026-01-23 01:25:06] -rw-r--r-- 2 ek ek 294151797 Jan 22 23:33 EVNT.48313433._000003.pool.root.1
[2026-01-23 01:25:06] -rw-r--r-- 2 ek ek    597760 Jan 22 23:33 input.tar.gz
[2026-01-23 01:25:06] -rw-r--r-- 2 ek ek     15845 Jan 22 23:33 start_atlas.sh
[2026-01-23 01:25:06] drwxrwx--x 2 ek ek      4096 Jan 22 23:33 shared
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek         0 Jan 22 23:33 boinc_setup_complete
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek      9841 Jan 22 23:33 init_data.xml
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek         0 Jan 22 23:33 boinc_lockfile
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek      2613 Jan 22 23:33 pandaJob.out
[2026-01-23 01:25:06] -rw------- 1 ek ek        50 Jan 22 23:33 setup.sh.local
[2026-01-23 01:25:06] -rw------- 1 ek ek   1003905 Jan 22 23:33 agis_schedconf.cvmfs.json
[2026-01-23 01:25:06] -rw------- 1 ek ek   1516246 Jan 22 23:33 agis_ddmendpoints.agis.ALL.json
[2026-01-23 01:25:06] -rw------- 1 ek ek       433 Jan 22 23:33 workernode_map.json
[2026-01-23 01:25:06] drwx------ 5 ek ek      4096 Jan 22 23:33 pilot3
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek       529 Jan 23 01:23 boinc_task_state.xml
[2026-01-23 01:25:06] -rw------- 1 ek ek 324299000 Jan 23 01:23 HITS.48313436._000056.pool.root.1
[2026-01-23 01:25:06] -rw------- 1 ek ek      1042 Jan 23 01:24 memory_monitor_summary.json
[2026-01-23 01:25:06] -rw------- 1 ek ek    289536 Jan 23 01:24 log.48313436._000056.job.log.tgz.1
[2026-01-23 01:25:06] -rw------- 1 ek ek      6356 Jan 23 01:24 heartbeat.json
[2026-01-23 01:25:06] -rw------- 1 ek ek        95 Jan 23 01:24 pilot_heartbeat.json
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek      8192 Jan 23 01:24 boinc_mmap_file
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek        27 Jan 23 01:24 wrapper_checkpoint.txt
[2026-01-23 01:25:06] -rw------- 1 ek ek      5337 Jan 23 01:25 pilotlog.txt
[2026-01-23 01:25:06] -rw------- 1 ek ek    950025 Jan 23 01:25 log.48313436._000056.job.log.1
[2026-01-23 01:25:06] -rw------- 1 ek ek       357 Jan 23 01:25 output.list
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek       620 Jan 23 01:25 runtime_log
[2026-01-23 01:25:06] -rw------- 1 ek ek   1259520 Jan 23 01:25 result.tar.gz
[2026-01-23 01:25:06] -rw------- 1 ek ek       669 Jan 23 01:25 c98KDm7Iq28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmisyKDmjP8xum.diag
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek      9501 Jan 23 01:25 runtime_log.err
[2026-01-23 01:25:06] -rw-rw-r-- 1 ek ek     20870 Jan 23 01:25 stderr.txt
[2026-01-23 01:25:06] HITS file was successfully produced:
[2026-01-23 01:25:06] -rw------- 1 ek ek 324299000 Jan 23 01:23 shared/HITS.pool.root.1
[2026-01-23 01:25:06]  *** Contents of shared directory: ***
[2026-01-23 01:25:06] total 605800
[2026-01-23 01:25:06] -rw-r--r-- 2 ek ek 294151797 Jan 22 23:33 ATLAS.root_0
[2026-01-23 01:25:06] -rw-r--r-- 2 ek ek    597760 Jan 22 23:33 input.tar.gz
[2026-01-23 01:25:06] -rw-r--r-- 2 ek ek     15845 Jan 22 23:33 start_atlas.sh
[2026-01-23 01:25:06] -rw------- 1 ek ek 324299000 Jan 23 01:23 HITS.pool.root.1
[2026-01-23 01:25:06] -rw------- 1 ek ek   1259520 Jan 23 01:25 result.tar.gz
01:25:08 (3625017): run_atlas exited; CPU time 25344.292751
01:25:08 (3625017): called boinc_finish(0)

</stderr_txt>
]]>

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