Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
05:21:37 (31347): wrapper (7.7.26015): starting
05:21:37 (31347): wrapper: running run_atlas (--nthreads 8)
[2026-01-22 05:21:37] Arguments: --nthreads 8
[2026-01-22 05:21:37] Threads: 8
[2026-01-22 05:21:37] Checking for CVMFS
[2026-01-22 05:21:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 05:21:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 05:21:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 05:21:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 05:21:37] 2.11.0.0 8171 147264 81116 155392 1 188 3262450 4096000 4488 130560 4 5467844 99.010 8998048 457 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-22 05:21:37] CVMFS is ok
[2026-01-22 05:21:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 05:21:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 05:21:38] Further information can be found at the LHC@home message board.
[2026-01-22 05:21:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 05:21:38] Checking for apptainer binary...
[2026-01-22 05:21:38] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-22 05:21:38] apptainer is not installed, using version from CVMFS
[2026-01-22 05:21:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 05:21:38] WARNING: Environment variable TMPDIR already has value [/tmp/job_11036739/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node098
[2026-01-22 05:21:38] apptainer works
[2026-01-22 05:21:38] Set ATHENA_PROC_NUMBER=8
[2026-01-22 05:21:38] Set ATHENA_CORE_NUMBER=8
[2026-01-22 05:21:38] Starting ATLAS job with PandaID=6977268792
[2026-01-22 05:21:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11036739/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 06:06:54]  *** The last 200 lines of the pilot log: ***
[2026-01-22 06:06:54]  filesize=298945
[2026-01-22 06:06:54]  filetype=log
[2026-01-22 06:06:54]  guid=182c5c4c-81d7-4041-b9f2-7a164fc42ce0
[2026-01-22 06:06:54]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-22 06:06:54]  is_altstaged=None
[2026-01-22 06:06:54]  is_tar=False
[2026-01-22 06:06:54]  lfn=log.48298244._000392.job.log.tgz.1
[2026-01-22 06:06:54]  mtime=0
[2026-01-22 06:06:54]  protocol_id=None
[2026-01-22 06:06:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-22 06:06:54]  replicas=None
[2026-01-22 06:06:54]  scope=mc23_13p6TeV
[2026-01-22 06:06:54]  status=None
[2026-01-22 06:06:54]  status_code=0
[2026-01-22 06:06:54]  storage_token=
[2026-01-22 06:06:54]  surl=/tmp/job_11036739/atlas/pilot/slots/0/PanDA_Pilot-6977268792/log.48298244._000392.job.log.tgz.1
[2026-01-22 06:06:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/32/log.48298244._000392.job.log.tgz.1
[2026-01-22 06:06:54]  workdir=None
[2026-01-22 06:06:54] ]
[2026-01-22 06:06:54] 2026-01-22 05:06:02,533 | INFO     | transferring file log.48298244._000392.job.log.tgz.1 from /tmp/job_11036739/atlas/pilot/slots/0/PanDA_Pilot-6977268792/log.48298244._000392.job.log.tgz.1 to /tmp/j
[2026-01-22 06:06:54] 2026-01-22 05:06:02,534 | INFO     | executing command: /usr/bin/env mv /tmp/job_11036739/atlas/pilot/slots/0/PanDA_Pilot-6977268792/log.48298244._000392.job.log.tgz.1 /tmp/job_11036739/atlas/pilot/sl
[2026-01-22 06:06:54] 2026-01-22 05:06:02,542 | INFO     | adding to output.list: log.48298244._000392.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/32/log.48298244._000392.job.log.tg
[2026-01-22 06:06:54] 2026-01-22 05:06:02,542 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-22 06:06:54] 2026-01-22 05:06:02,542 | INFO     | summary of transferred files:
[2026-01-22 06:06:54] 2026-01-22 05:06:02,542 | INFO     |  -- lfn=log.48298244._000392.job.log.tgz.1, status_code=0, status=transferred
[2026-01-22 06:06:54] 2026-01-22 05:06:02,542 | INFO     | stage-out finished correctly
[2026-01-22 06:06:54] 2026-01-22 05:06:02,592 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-22 06:06:54] 2026-01-22 05:06:04,366 | INFO     | time since job start (2660s) is within the limit (349056.0s)
[2026-01-22 06:06:54] 2026-01-22 05:06:04,726 | INFO     | monitor loop #204: job 0:6977268792 is in state 'finished'
[2026-01-22 06:06:54] 2026-01-22 05:06:04,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,637 | INFO     | job 6977268792 has state=finished
[2026-01-22 06:06:54] 2026-01-22 05:06:05,637 | INFO     | preparing for final server update for job 6977268792 in state='finished'
[2026-01-22 06:06:54] 2026-01-22 05:06:05,638 | INFO     | reading metadata from: /tmp/job_11036739/atlas/pilot/slots/0/PanDA_Pilot-6977268792/jobReport.json
[2026-01-22 06:06:54] 2026-01-22 05:06:05,639 | INFO     | added worker_node to metadata from /tmp/job_11036739/atlas/pilot/slots/0/workernode_map.json
[2026-01-22 06:06:54] 2026-01-22 05:06:05,639 | INFO     | this job has now completed (state=finished)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,639 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,639 | INFO     | log transfer has been attempted: DONE
[2026-01-22 06:06:54] 2026-01-22 05:06:05,639 | INFO     | job 6977268792 has finished - writing final server update
[2026-01-22 06:06:54] 2026-01-22 05:06:05,639 | INFO     | total number of processed events: 400 (read)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,657 | INFO     | using path: /tmp/job_11036739/atlas/pilot/slots/0/PanDA_Pilot-6977268792/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,657 | INFO     | extracted standard info from prmon json
[2026-01-22 06:06:54] 2026-01-22 05:06:05,657 | INFO     | extracted standard memory fields from prmon json
[2026-01-22 06:06:54] 2026-01-22 05:06:05,657 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-22 06:06:54] 2026-01-22 05:06:05,658 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-22 06:06:54] 2026-01-22 05:06:05,658 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-22 06:06:54] 2026-01-22 05:06:05,658 | INFO     | fitting pss+swap vs Time
[2026-01-22 06:06:54] 2026-01-22 05:06:05,658 | INFO     | sum of square deviations: 15695178.0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,658 | INFO     | sum of deviations: 440691938.0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,658 | INFO     | mean x: 1769057124.0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,658 | INFO     | mean y: 2603552.243243243
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | intersect: -49669290096.128654
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | chi2: 0.0005068425893025859
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | current memory leak: 28.08 B/s (using 37 data points, chi2=0.00)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | could have reported an average CPU frequency of 2649 MHz (5 samples)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | ..............................
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . Timing measurements:
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . get job = 0 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . initial setup = 2 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . payload setup = 2 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . stage-in = 0 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . payload execution = 2640 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . stage-out = 0 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | . log creation = 0 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,659 | INFO     | ..............................
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | 
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | job summary report
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | --------------------------------------------------
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | PanDA job id: 6977268792
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | task id: 48298244
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | errors: (none)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-22 06:06:54] 2026-01-22 05:06:05,706 | INFO     | pilot state: finished 
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | transexitcode: 0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | exeerrorcode: 0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | exeerrordiag: 
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | exitcode: 0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | exitmsg: OK
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | cpuconsumptiontime: 19366 s
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | nevents: 400
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | neventsw: 0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | pid: 10012
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | pgrp: 10012
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | corecount: 8
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | event service: False
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | sizes: {0: 2284508, 11: 2284508, 2646: 2309862, 2647: 2318946, 2650: 2319116}
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | --------------------------------------------------
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | 
[2026-01-22 06:06:54] 2026-01-22 05:06:05,707 | INFO     | executing command: ls -lF /tmp/job_11036739/atlas/pilot/slots/0
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | job 6977268792 has completed (purged errors)
[2026-01-22 06:06:54] 2026-01-22 05:06:05,717 | INFO     | overall cleanup function is called
[2026-01-22 06:06:54] 2026-01-22 05:06:06,723 | INFO     | --- collectZombieJob: --- 10, [10012]
[2026-01-22 06:06:54] 2026-01-22 05:06:06,723 | INFO     | zombie collector waiting for pid 10012
[2026-01-22 06:06:54] 2026-01-22 05:06:06,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 06:06:54] 2026-01-22 05:06:06,723 | INFO     | collected zombie processes
[2026-01-22 06:06:54] 2026-01-22 05:06:06,723 | INFO     | will attempt to kill all subprocesses of pid=10012
[2026-01-22 06:06:54] 2026-01-22 05:06:06,828 | INFO     | process IDs to be killed: [10012] (in reverse order)
[2026-01-22 06:06:54] 2026-01-22 05:06:06,867 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 06:06:54] 2026-01-22 05:06:06,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 06:06:54] 2026-01-22 05:06:06,872 | INFO     | did not find any defunct processes belonging to 10012
[2026-01-22 06:06:54] 2026-01-22 05:06:06,875 | INFO     | did not find any defunct processes belonging to 10012
[2026-01-22 06:06:54] 2026-01-22 05:06:06,875 | INFO     | ready for new job
[2026-01-22 06:06:54] 2026-01-22 05:06:06,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 06:06:54] 2026-01-22 05:06:06,876 | INFO     | **************************************
[2026-01-22 06:06:54] 2026-01-22 05:06:06,876 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 06:06:54] 2026-01-22 05:06:06,876 | INFO     | **************************************
[2026-01-22 06:06:54] 2026-01-22 05:06:06,876 | INFO     | 
[2026-01-22 06:06:54] 2026-01-22 05:06:06,891 | INFO     | architecture information:
[2026-01-22 06:06:54] 2026-01-22 05:06:06,891 | INFO     | executing command: cat /etc/os-release
[2026-01-22 06:06:54] 2026-01-22 05:06:06,896 | INFO     | cat /etc/os-release:
[2026-01-22 06:06:54] NAME="CentOS Linux"
[2026-01-22 06:06:54] VERSION="7 (Core)"
[2026-01-22 06:06:54] ID="centos"
[2026-01-22 06:06:54] ID_LIKE="rhel fedora"
[2026-01-22 06:06:54] VERSION_ID="7"
[2026-01-22 06:06:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 06:06:54] ANSI_COLOR="0;31"
[2026-01-22 06:06:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 06:06:54] HOME_URL="https://www.centos.org/"
[2026-01-22 06:06:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 06:06:54] 
[2026-01-22 06:06:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 06:06:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 06:06:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 06:06:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 06:06:54] 
[2026-01-22 06:06:54] 2026-01-22 05:06:06,897 | INFO     | **************************************
[2026-01-22 06:06:54] 2026-01-22 05:06:07,399 | INFO     | executing command: df -mP /tmp/job_11036739/atlas/pilot/slots/0
[2026-01-22 06:06:54] 2026-01-22 05:06:07,405 | INFO     | sufficient remaining disk space (224445595648 B)
[2026-01-22 06:06:54] 2026-01-22 05:06:07,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 06:06:54] 2026-01-22 05:06:07,405 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 06:06:54] 2026-01-22 05:06:07,405 | INFO     | update_server=False
[2026-01-22 06:06:54] 2026-01-22 05:06:07,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 06:06:54] 2026-01-22 05:06:07,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 06:06:54] 2026-01-22 05:06:07,534 | INFO     | all data control threads have been joined
[2026-01-22 06:06:54] 2026-01-22 05:06:07,704 | INFO     | all payload control threads have been joined
[2026-01-22 06:06:54] 2026-01-22 05:06:07,897 | INFO     | all job control threads have been joined
[2026-01-22 06:06:54] 2026-01-22 05:06:08,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 06:06:54] 2026-01-22 05:06:08,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 06:06:54] 2026-01-22 05:06:08,234 | INFO     | aborting loop
[2026-01-22 06:06:54] 2026-01-22 05:06:08,411 | INFO     | [job] retrieve thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,411 | INFO     | [job] queue monitor thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,539 | INFO     | [data] control thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 06:06:54] 2026-01-22 05:06:08,709 | INFO     | [payload] control thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,712 | INFO     | [job] validate thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,736 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,825 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,902 | INFO     | [job] control thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:08,987 | INFO     | [payload] failed_post thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:09,015 | INFO     | [data] copytool_in thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:09,150 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:09,239 | INFO     | [job] job monitor thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:09,396 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:09,599 | INFO     | [payload] validate_post thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:10,105 | INFO     | [data] copytool_out thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:12,647 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 06:06:54] 2026-01-22 05:06:37,562 | INFO     | PID=3919 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-22 06:06:54] 2026-01-22 05:06:37,562 | INFO     | .. there are 5 such processes running
[2026-01-22 06:06:54] 2026-01-22 05:06:37,562 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 06:06:54] 2026-01-22 05:06:37,562 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 06:06:54] 2026-01-22 05:06:37,562 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 06:06:54] 2026-01-22 05:06:42,291 [wrapper] supervise_pilot (15 min periods counter: 4)
[2026-01-22 06:06:54] 2026-01-22 05:06:48,819 | INFO     | [monitor] cgroup control has ended
[2026-01-22 06:06:54] 2026-01-22 05:06:49,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065283840)>']
[2026-01-22 06:06:54] 2026-01-22 05:06:49,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 06:06:54] 2026-01-22 05:06:49,623 | INFO     | [monitor] control thread has ended
[2026-01-22 06:06:54] 2026-01-22 05:06:54,312 | INFO     | all workflow threads have been joined
[2026-01-22 06:06:54] 2026-01-22 05:06:54,312 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 06:06:54] 2026-01-22 05:06:54,312 | INFO     | traces error code: 0
[2026-01-22 06:06:54] 2026-01-22 05:06:54,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 06:06:54] 2026-01-22 05:06:54,362 [wrapper] ==== pilot stdout END ====
[2026-01-22 06:06:54] 2026-01-22 05:06:54,364 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 06:06:54] 2026-01-22 05:06:54,365 [wrapper] pilotpid: 3919
[2026-01-22 06:06:54] 2026-01-22 05:06:54,366 [wrapper] Pilot exit status: 0
[2026-01-22 06:06:54] 2026-01-22 05:06:54,370 [wrapper] pandaids: 6977268792
[2026-01-22 06:06:54] 2026-01-22 05:06:54,392 [wrapper] cleanup supervisor_pilot 10899 3920
[2026-01-22 06:06:54] 2026-01-22 05:06:54,393 [wrapper] Test setup, not cleaning
[2026-01-22 06:06:54] 2026-01-22 05:06:54,395 [wrapper] apfmon messages muted
[2026-01-22 06:06:54] 2026-01-22 05:06:54,396 [wrapper] ==== wrapper stdout END ====
[2026-01-22 06:06:54] 2026-01-22 05:06:54,397 [wrapper] ==== wrapper stderr END ====
[2026-01-22 06:06:54]  *** Error codes and diagnostics ***
[2026-01-22 06:06:54]     "exeErrorCode": 0,
[2026-01-22 06:06:54]     "exeErrorDiag": "",
[2026-01-22 06:06:54]     "pilotErrorCode": 0,
[2026-01-22 06:06:54]     "pilotErrorDiag": "",
[2026-01-22 06:06:54]  *** Listing of results directory ***
[2026-01-22 06:06:54] total 430528
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      5111 Jan 21 07:41 queuedata.json
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user    584422 Jan 21 07:41 pilot3.tar.gz
[2026-01-22 06:06:54] -rwx------ 1 mf493845 unix-user     36322 Jan 21 07:41 runpilot2-wrapper.sh
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user       100 Jan 22 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 06:06:54] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 22 04:15 run_atlas
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user       105 Jan 22 04:15 job.xml
[2026-01-22 06:06:54] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 22 05:21 start_atlas.sh
[2026-01-22 06:06:54] drwxrwx--x 2 mf493845 unix-user       100 Jan 22 05:21 shared
[2026-01-22 06:06:54] -rw-r--r-- 2 mf493845 unix-user    597775 Jan 22 05:21 input.tar.gz
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      6390 Jan 22 05:21 init_data.xml
[2026-01-22 06:06:54] -rw-r--r-- 2 mf493845 unix-user 258775771 Jan 22 05:21 EVNT.48298242._000016.pool.root.1
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user         0 Jan 22 05:21 boinc_setup_complete
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      8192 Jan 22 05:21 boinc_mmap_file
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user         0 Jan 22 05:21 boinc_lockfile
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      2627 Jan 22 05:21 pandaJob.out
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user   1002771 Jan 22 05:21 agis_schedconf.cvmfs.json
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user   1516246 Jan 22 05:21 agis_ddmendpoints.agis.ALL.json
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user       413 Jan 22 05:21 workernode_map.json
[2026-01-22 06:06:54] drwx------ 5 mf493845 unix-user       440 Jan 22 05:21 pilot3
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user 176719576 Jan 22 06:05 HITS.48298244._000392.pool.root.1
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      1010 Jan 22 06:05 memory_monitor_summary.json
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user    298945 Jan 22 06:06 log.48298244._000392.job.log.tgz.1
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      6284 Jan 22 06:06 heartbeat.json
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user        95 Jan 22 06:06 pilot_heartbeat.json
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      4830 Jan 22 06:06 pilotlog.txt
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user    428005 Jan 22 06:06 log.48298244._000392.job.log.1
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user       357 Jan 22 06:06 output.list
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user       620 Jan 22 06:06 runtime_log
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user    747520 Jan 22 06:06 result.tar.gz
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user      9219 Jan 22 06:06 runtime_log.err
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user       637 Jan 22 06:06 gKdLDmf5g28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH0xKDmZ6db6m.diag
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user     21678 Jan 22 06:06 stderr.txt
[2026-01-22 06:06:54] HITS file was successfully produced:
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user 176719576 Jan 22 06:05 shared/HITS.pool.root.1
[2026-01-22 06:06:54]  *** Contents of shared directory: ***
[2026-01-22 06:06:54] total 426624
[2026-01-22 06:06:54] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 22 05:21 start_atlas.sh
[2026-01-22 06:06:54] -rw-r--r-- 2 mf493845 unix-user    597775 Jan 22 05:21 input.tar.gz
[2026-01-22 06:06:54] -rw-r--r-- 2 mf493845 unix-user 258775771 Jan 22 05:21 ATLAS.root_0
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user 176719576 Jan 22 06:05 HITS.pool.root.1
[2026-01-22 06:06:54] -rw------- 1 mf493845 unix-user    747520 Jan 22 06:06 result.tar.gz
06:06:56 (31347): run_atlas exited; CPU time 19404.216331
06:06:56 (31347): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN