Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:29:20 (1103877): wrapper (7.7.26015): starting
12:29:20 (1103877): wrapper: running run_atlas (--nthreads 2)
[2026-01-22 12:29:20] Arguments: --nthreads 2
[2026-01-22 12:29:20] Threads: 2
[2026-01-22 12:29:20] Checking for CVMFS
[2026-01-22 12:29:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 12:29:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 12:29:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 12:29:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 12:29:23] 2.9.2.0 878484 2246 57268 155392 3 188 19898931 36864001 0 130560 0 653249 99.985 42068 13329 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-22 12:29:23] CVMFS is ok
[2026-01-22 12:29:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 12:29:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 12:29:23] Further information can be found at the LHC@home message board.
[2026-01-22 12:29:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 12:29:23] Checking for apptainer binary...
[2026-01-22 12:29:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 12:29:23] Running /usr/bin/apptainer --version
[2026-01-22 12:29:23] apptainer version 1.4.1-1.1
[2026-01-22 12:29:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 12:29:23] madmaxA277a
[2026-01-22 12:29:23] apptainer works
[2026-01-22 12:29:23] Set ATHENA_PROC_NUMBER=2
[2026-01-22 12:29:23] Set ATHENA_CORE_NUMBER=2
[2026-01-22 12:29:23] Starting ATLAS job with PandaID=6977297922
[2026-01-22 12:29:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 14:29:00]  *** The last 200 lines of the pilot log: ***
[2026-01-22 14:29:00] 2026-01-22 13:28:13,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | job 6977297922 has completed (purged errors)
[2026-01-22 14:29:00] 2026-01-22 13:28:13,200 | INFO     | overall cleanup function is called
[2026-01-22 14:29:00] 2026-01-22 13:28:14,201 | INFO     | --- collectZombieJob: --- 10, [1112316]
[2026-01-22 14:29:00] 2026-01-22 13:28:14,201 | INFO     | zombie collector waiting for pid 1112316
[2026-01-22 14:29:00] 2026-01-22 13:28:14,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 14:29:00] 2026-01-22 13:28:14,202 | INFO     | collected zombie processes
[2026-01-22 14:29:00] 2026-01-22 13:28:14,202 | INFO     | will attempt to kill all subprocesses of pid=1112316
[2026-01-22 14:29:00] 2026-01-22 13:28:14,233 | INFO     | process IDs to be killed: [1112316] (in reverse order)
[2026-01-22 14:29:00] 2026-01-22 13:28:14,254 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 14:29:00] 2026-01-22 13:28:14,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 14:29:00] 2026-01-22 13:28:14,255 | INFO     | did not find any defunct processes belonging to 1112316
[2026-01-22 14:29:00] 2026-01-22 13:28:14,255 | INFO     | did not find any defunct processes belonging to 1112316
[2026-01-22 14:29:00] 2026-01-22 13:28:14,256 | INFO     | ready for new job
[2026-01-22 14:29:00] 2026-01-22 13:28:14,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 14:29:00] 2026-01-22 13:28:14,256 | INFO     | **************************************
[2026-01-22 14:29:00] 2026-01-22 13:28:14,256 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 14:29:00] 2026-01-22 13:28:14,256 | INFO     | **************************************
[2026-01-22 14:29:00] 2026-01-22 13:28:14,256 | INFO     | 
[2026-01-22 14:29:00] 2026-01-22 13:28:14,256 | INFO     | architecture information:
[2026-01-22 14:29:00] 2026-01-22 13:28:14,257 | INFO     | executing command: cat /etc/os-release
[2026-01-22 14:29:00] 2026-01-22 13:28:14,265 | INFO     | cat /etc/os-release:
[2026-01-22 14:29:00] NAME="CentOS Linux"
[2026-01-22 14:29:00] VERSION="7 (Core)"
[2026-01-22 14:29:00] ID="centos"
[2026-01-22 14:29:00] ID_LIKE="rhel fedora"
[2026-01-22 14:29:00] VERSION_ID="7"
[2026-01-22 14:29:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 14:29:00] ANSI_COLOR="0;31"
[2026-01-22 14:29:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 14:29:00] HOME_URL="https://www.centos.org/"
[2026-01-22 14:29:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 14:29:00] 
[2026-01-22 14:29:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 14:29:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 14:29:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 14:29:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 14:29:00] 
[2026-01-22 14:29:00] 2026-01-22 13:28:14,265 | INFO     | **************************************
[2026-01-22 14:29:00] 2026-01-22 13:28:14,768 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-22 14:29:00] 2026-01-22 13:28:14,780 | INFO     | sufficient remaining disk space (498197331968 B)
[2026-01-22 14:29:00] 2026-01-22 13:28:14,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 14:29:00] 2026-01-22 13:28:14,780 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 14:29:00] 2026-01-22 13:28:14,780 | INFO     | update_server=False
[2026-01-22 14:29:00] 2026-01-22 13:28:14,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 14:29:00] 2026-01-22 13:28:14,780 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-22 14:29:00] 2026-01-22 13:28:14,781 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 14:29:00] 2026-01-22 13:28:14,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 14:29:00] 2026-01-22 13:28:14,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 14:29:00] 2026-01-22 13:28:14,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 14:29:00] 2026-01-22 13:28:14,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 14:29:00] 2026-01-22 13:28:14,902 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 14:29:00] 2026-01-22 13:28:15,119 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-22 14:29:00] 2026-01-22 13:28:15,120 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-22 14:29:00] 2026-01-22 13:28:15,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 14:29:00] 2026-01-22 13:28:15,120 | INFO     | will abort loop
[2026-01-22 14:29:00] 2026-01-22 13:28:15,255 | INFO     | all job control threads have been joined
[2026-01-22 14:29:00] 2026-01-22 13:28:15,786 | INFO     | [job] retrieve thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:15,787 | INFO     | [job] queue monitor thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:15,860 | INFO     | all data control threads have been joined
[2026-01-22 14:29:00] 2026-01-22 13:28:15,887 | INFO     | [payload] failed_post thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,126 | INFO     | [job] job monitor thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,186 | INFO     | all payload control threads have been joined
[2026-01-22 14:29:00] 2026-01-22 13:28:16,261 | INFO     | [job] control thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,558 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,616 | INFO     | [job] validate thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,702 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,758 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,862 | INFO     | [data] copytool_in thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,865 | INFO     | [data] control thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,886 | INFO     | [payload] validate_post thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:16,908 | INFO     | [data] copytool_out thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:17,192 | INFO     | [payload] control thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:18,788 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:25,836 | INFO     | job.realtimelogging is not enabled
[2026-01-22 14:29:00] 2026-01-22 13:28:26,842 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 14:29:00] 2026-01-22 13:28:54,969 | INFO     | [monitor] cgroup control has ended
[2026-01-22 14:29:00] 2026-01-22 13:28:55,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140277495117632)>', '<ExcThread(monitor, started 140276786001664)>']
[2026-01-22 14:29:00] 2026-01-22 13:28:55,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 14:29:00] 2026-01-22 13:28:55,993 | INFO     | [monitor] control thread has ended
[2026-01-22 14:29:00] 2026-01-22 13:29:00,674 | INFO     | all workflow threads have been joined
[2026-01-22 14:29:00] 2026-01-22 13:29:00,675 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 14:29:00] 2026-01-22 13:29:00,676 | INFO     | traces error code: 0
[2026-01-22 14:29:00] 2026-01-22 13:29:00,676 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 14:29:00] 2026-01-22 13:29:00,719 [wrapper] ==== pilot stdout END ====
[2026-01-22 14:29:00] 2026-01-22 13:29:00,721 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 14:29:00] 2026-01-22 13:29:00,723 [wrapper] pilotpid: 1107907
[2026-01-22 14:29:00] 2026-01-22 13:29:00,725 [wrapper] Pilot exit status: 0
[2026-01-22 14:29:00] 2026-01-22 13:29:00,731 [wrapper] pandaids: 6977297922
[2026-01-22 14:29:00] 2026-01-22 13:29:00,742 [wrapper] cleanup supervisor_pilot 1117161 1107908
[2026-01-22 14:29:00] 2026-01-22 13:29:00,744 [wrapper] Test setup, not cleaning
[2026-01-22 14:29:00] 2026-01-22 13:29:00,746 [wrapper] apfmon messages muted
[2026-01-22 14:29:00] 2026-01-22 13:29:00,748 [wrapper] ==== wrapper stdout END ====
[2026-01-22 14:29:00] 2026-01-22 13:29:00,750 [wrapper] ==== wrapper stderr END ====
[2026-01-22 14:29:00]  *** Error codes and diagnostics ***
[2026-01-22 14:29:00]     "exeErrorCode": 0,
[2026-01-22 14:29:00]     "exeErrorDiag": "",
[2026-01-22 14:29:00]     "pilotErrorCode": 0,
[2026-01-22 14:29:00]     "pilotErrorDiag": "",
[2026-01-22 14:29:00]  *** Listing of results directory ***
[2026-01-22 14:29:01] total 429620
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc    584422 Jan 21 07:41 pilot3.tar.gz
[2026-01-22 14:29:01] -rwx------ 1 boinc boinc     36322 Jan 21 07:42 runpilot2-wrapper.sh
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc      5111 Jan 21 07:43 queuedata.json
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc       100 Jan 22 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 14:29:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 22 12:29 run_atlas
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc       105 Jan 22 12:29 job.xml
[2026-01-22 14:29:01] -rw-r--r-- 2 boinc boinc 259896099 Jan 22 12:29 EVNT.48299547._000002.pool.root.1
[2026-01-22 14:29:01] -rw-r--r-- 2 boinc boinc    597776 Jan 22 12:29 input.tar.gz
[2026-01-22 14:29:01] -rw-r--r-- 2 boinc boinc     15845 Jan 22 12:29 start_atlas.sh
[2026-01-22 14:29:01] drwxrwx--x 2 boinc boinc      4096 Jan 22 12:29 shared
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc         0 Jan 22 12:29 boinc_setup_complete
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc      6210 Jan 22 12:29 init_data.xml
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc         0 Jan 22 12:29 boinc_lockfile
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc      2619 Jan 22 12:29 pandaJob.out
[2026-01-22 14:29:01] -rw------- 1 boinc boinc   1002771 Jan 22 12:29 agis_schedconf.cvmfs.json
[2026-01-22 14:29:01] -rw------- 1 boinc boinc   1516246 Jan 22 12:29 agis_ddmendpoints.agis.ALL.json
[2026-01-22 14:29:01] -rw------- 1 boinc boinc       424 Jan 22 12:29 workernode_map.json
[2026-01-22 14:29:01] drwx------ 5 boinc boinc      4096 Jan 22 12:29 pilot3
[2026-01-22 14:29:01] -rw------- 1 boinc boinc 173525228 Jan 22 14:27 HITS.48299549._000039.pool.root.1
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc       529 Jan 22 14:27 boinc_task_state.xml
[2026-01-22 14:29:01] -rw------- 1 boinc boinc      1018 Jan 22 14:28 memory_monitor_summary.json
[2026-01-22 14:29:01] -rw------- 1 boinc boinc    268885 Jan 22 14:28 log.48299549._000039.job.log.tgz.1
[2026-01-22 14:29:01] -rw------- 1 boinc boinc        95 Jan 22 14:28 pilot_heartbeat.json
[2026-01-22 14:29:01] -rw------- 1 boinc boinc      6305 Jan 22 14:28 heartbeat.json
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc        27 Jan 22 14:28 wrapper_checkpoint.txt
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc      8192 Jan 22 14:28 boinc_mmap_file
[2026-01-22 14:29:01] -rw------- 1 boinc boinc      4810 Jan 22 14:29 pilotlog.txt
[2026-01-22 14:29:01] -rw------- 1 boinc boinc   1022312 Jan 22 14:29 log.48299549._000039.job.log.1
[2026-01-22 14:29:01] -rw------- 1 boinc boinc       357 Jan 22 14:29 output.list
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc       620 Jan 22 14:29 runtime_log
[2026-01-22 14:29:01] -rw------- 1 boinc boinc   1310720 Jan 22 14:29 result.tar.gz
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc      8921 Jan 22 14:29 runtime_log.err
[2026-01-22 14:29:01] -rw------- 1 boinc boinc       662 Jan 22 14:29 2INMDmI6g28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbVrKDmhUMf7m.diag
[2026-01-22 14:29:01] -rw-r--r-- 1 boinc boinc     12595 Jan 22 14:29 stderr.txt
[2026-01-22 14:29:01] HITS file was successfully produced:
[2026-01-22 14:29:01] -rw------- 1 boinc boinc 173525228 Jan 22 14:27 shared/HITS.pool.root.1
[2026-01-22 14:29:01]  *** Contents of shared directory: ***
[2026-01-22 14:29:01] total 425152
[2026-01-22 14:29:01] -rw-r--r-- 2 boinc boinc 259896099 Jan 22 12:29 ATLAS.root_0
[2026-01-22 14:29:01] -rw-r--r-- 2 boinc boinc    597776 Jan 22 12:29 input.tar.gz
[2026-01-22 14:29:01] -rw-r--r-- 2 boinc boinc     15845 Jan 22 12:29 start_atlas.sh
[2026-01-22 14:29:01] -rw------- 1 boinc boinc 173525228 Jan 22 14:27 HITS.pool.root.1
[2026-01-22 14:29:01] -rw------- 1 boinc boinc   1310720 Jan 22 14:29 result.tar.gz
14:29:02 (1103877): run_atlas exited; CPU time 13764.128808
14:29:02 (1103877): called boinc_finish(0)

</stderr_txt>
]]>

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