Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:02:55 (2304689): wrapper (7.7.26015): starting
06:02:55 (2304689): wrapper: running run_atlas (--nthreads 4)
[2026-01-22 06:02:55] Arguments: --nthreads 4
[2026-01-22 06:02:55] Threads: 4
[2026-01-22 06:02:55] Checking for CVMFS
[2026-01-22 06:02:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 06:02:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 06:02:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 06:02:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 06:02:55] 2.9.2.0 14238 1521 85784 155392 0 188 30357541 36864001 0 130560 0 757338 99.993 27592 10984 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-22 06:02:55] CVMFS is ok
[2026-01-22 06:02:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 06:02:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 06:02:55] Further information can be found at the LHC@home message board.
[2026-01-22 06:02:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 06:02:55] Checking for apptainer binary...
[2026-01-22 06:02:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 06:02:55] Running /usr/bin/apptainer --version
[2026-01-22 06:02:55] apptainer version 1.4.1-1.1
[2026-01-22 06:02:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 06:02:55] thA373a
[2026-01-22 06:02:55] apptainer works
[2026-01-22 06:02:55] Set ATHENA_PROC_NUMBER=4
[2026-01-22 06:02:55] Set ATHENA_CORE_NUMBER=4
[2026-01-22 06:02:55] Starting ATLAS job with PandaID=6977389273
[2026-01-22 06:02:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 07:35:29]  *** The last 200 lines of the pilot log: ***
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | job 6977389273 has completed (purged errors)
[2026-01-22 07:35:29] 2026-01-22 06:34:57,895 | INFO     | overall cleanup function is called
[2026-01-22 07:35:29] 2026-01-22 06:34:58,901 | INFO     | --- collectZombieJob: --- 10, [2331262]
[2026-01-22 07:35:29] 2026-01-22 06:34:58,902 | INFO     | zombie collector waiting for pid 2331262
[2026-01-22 07:35:29] 2026-01-22 06:34:58,902 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 07:35:29] 2026-01-22 06:34:58,902 | INFO     | collected zombie processes
[2026-01-22 07:35:29] 2026-01-22 06:34:58,902 | INFO     | will attempt to kill all subprocesses of pid=2331262
[2026-01-22 07:35:29] 2026-01-22 06:34:58,940 | INFO     | process IDs to be killed: [2331262] (in reverse order)
[2026-01-22 07:35:29] 2026-01-22 06:34:58,980 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 07:35:29] 2026-01-22 06:34:58,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 07:35:29] 2026-01-22 06:34:58,982 | INFO     | did not find any defunct processes belonging to 2331262
[2026-01-22 07:35:29] 2026-01-22 06:34:58,983 | INFO     | did not find any defunct processes belonging to 2331262
[2026-01-22 07:35:29] 2026-01-22 06:34:58,983 | INFO     | ready for new job
[2026-01-22 07:35:29] 2026-01-22 06:34:58,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 07:35:29] 2026-01-22 06:34:58,984 | INFO     | **************************************
[2026-01-22 07:35:29] 2026-01-22 06:34:58,984 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 07:35:29] 2026-01-22 06:34:58,984 | INFO     | **************************************
[2026-01-22 07:35:29] 2026-01-22 06:34:58,984 | INFO     | 
[2026-01-22 07:35:29] 2026-01-22 06:34:58,985 | INFO     | architecture information:
[2026-01-22 07:35:29] 2026-01-22 06:34:58,985 | INFO     | executing command: cat /etc/os-release
[2026-01-22 07:35:29] 2026-01-22 06:34:59,000 | INFO     | cat /etc/os-release:
[2026-01-22 07:35:29] NAME="CentOS Linux"
[2026-01-22 07:35:29] VERSION="7 (Core)"
[2026-01-22 07:35:29] ID="centos"
[2026-01-22 07:35:29] ID_LIKE="rhel fedora"
[2026-01-22 07:35:29] VERSION_ID="7"
[2026-01-22 07:35:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 07:35:29] ANSI_COLOR="0;31"
[2026-01-22 07:35:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 07:35:29] HOME_URL="https://www.centos.org/"
[2026-01-22 07:35:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 07:35:29] 
[2026-01-22 07:35:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 07:35:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 07:35:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 07:35:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 07:35:29] 
[2026-01-22 07:35:29] 2026-01-22 06:34:59,000 | INFO     | **************************************
[2026-01-22 07:35:29] 2026-01-22 06:34:59,503 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-22 07:35:29] 2026-01-22 06:34:59,518 | INFO     | sufficient remaining disk space (325121474560 B)
[2026-01-22 07:35:29] 2026-01-22 06:34:59,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 07:35:29] 2026-01-22 06:34:59,518 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 07:35:29] 2026-01-22 06:34:59,518 | INFO     | update_server=False
[2026-01-22 07:35:29] 2026-01-22 06:34:59,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 07:35:29] 2026-01-22 06:34:59,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 07:35:29] 2026-01-22 06:34:59,519 | INFO     | aborting loop
[2026-01-22 07:35:29] 2026-01-22 06:34:59,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 07:35:29] 2026-01-22 06:34:59,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 07:35:29] 2026-01-22 06:35:00,195 | INFO     | all data control threads have been joined
[2026-01-22 07:35:29] 2026-01-22 06:35:00,396 | INFO     | all payload control threads have been joined
[2026-01-22 07:35:29] 2026-01-22 06:35:00,524 | INFO     | [job] retrieve thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:00,524 | INFO     | [job] job monitor thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:00,524 | INFO     | [job] queue monitor thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:00,629 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:00,681 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:00,823 | INFO     | [payload] validate_post thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:00,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 07:35:29] 2026-01-22 06:35:00,938 | INFO     | [data] copytool_in thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:01,047 | INFO     | all job control threads have been joined
[2026-01-22 07:35:29] 2026-01-22 06:35:01,201 | INFO     | [data] control thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:01,401 | INFO     | [payload] control thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:01,518 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:01,783 | INFO     | [payload] failed_post thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:01,955 | INFO     | [job] validate thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:02,053 | INFO     | [job] control thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:02,923 | INFO     | [data] copytool_out thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:03,524 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:10,246 | INFO     | job.realtimelogging is not enabled
[2026-01-22 07:35:29] 2026-01-22 06:35:11,251 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 07:35:29] 2026-01-22 06:35:15,738 | INFO     | [monitor] cgroup control has ended
[2026-01-22 07:35:29] 2026-01-22 06:35:17,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006839670592)>', '<ExcThread(monitor, started 140006085596928)>']
[2026-01-22 07:35:29] 2026-01-22 06:35:22,567 | INFO     | all workflow threads have been joined
[2026-01-22 07:35:29] 2026-01-22 06:35:22,567 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 07:35:29] 2026-01-22 06:35:22,567 | INFO     | traces error code: 0
[2026-01-22 07:35:29] 2026-01-22 06:35:22,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 07:35:29] 2026-01-22 06:35:29,415 | INFO     | PID=2312888 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-22 07:35:29] 2026-01-22 06:35:29,415 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 07:35:29] 2026-01-22 06:35:29,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 07:35:29] 2026-01-22 06:35:29,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 07:35:29] 2026-01-22 06:35:29,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 07:35:29] 2026-01-22 06:35:29,415 | INFO     | [monitor] control thread has ended
[2026-01-22 07:35:29] 2026-01-22 06:35:29,489 [wrapper] ==== pilot stdout END ====
[2026-01-22 07:35:29] 2026-01-22 06:35:29,493 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 07:35:29] 2026-01-22 06:35:29,496 [wrapper] pilotpid: 2312888
[2026-01-22 07:35:29] 2026-01-22 06:35:29,500 [wrapper] Pilot exit status: 0
[2026-01-22 07:35:29] 2026-01-22 06:35:29,512 [wrapper] pandaids: 6977389273
[2026-01-22 07:35:29] 2026-01-22 06:35:29,534 [wrapper] cleanup supervisor_pilot 1027675 2312889
[2026-01-22 07:35:29] 2026-01-22 06:35:29,538 [wrapper] Test setup, not cleaning
[2026-01-22 07:35:29] 2026-01-22 06:35:29,541 [wrapper] apfmon messages muted
[2026-01-22 07:35:29] 2026-01-22 06:35:29,545 [wrapper] ==== wrapper stdout END ====
[2026-01-22 07:35:29] 2026-01-22 06:35:29,548 [wrapper] ==== wrapper stderr END ====
[2026-01-22 07:35:29]  *** Error codes and diagnostics ***
[2026-01-22 07:35:29]     "exeErrorCode": 0,
[2026-01-22 07:35:29]     "exeErrorDiag": "",
[2026-01-22 07:35:29]     "pilotErrorCode": 0,
[2026-01-22 07:35:29]     "pilotErrorDiag": "",
[2026-01-22 07:35:29]  *** Listing of results directory ***
[2026-01-22 07:35:29] total 417360
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc    584422 Jan 21 11:08 pilot3.tar.gz
[2026-01-22 07:35:29] -rwx------ 1 boinc boinc     36322 Jan 21 11:09 runpilot2-wrapper.sh
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc      5111 Jan 21 11:10 queuedata.json
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc       100 Jan 22 06:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 07:35:29] -rwxr-xr-x 1 boinc boinc      7986 Jan 22 06:02 run_atlas
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc       105 Jan 22 06:02 job.xml
[2026-01-22 07:35:29] -rw-r--r-- 2 boinc boinc 251718185 Jan 22 06:02 EVNT.48299683._000016.pool.root.1
[2026-01-22 07:35:29] -rw-r--r-- 2 boinc boinc    597794 Jan 22 06:02 input.tar.gz
[2026-01-22 07:35:29] -rw-r--r-- 2 boinc boinc     15845 Jan 22 06:02 start_atlas.sh
[2026-01-22 07:35:29] drwxrwx--x 2 boinc boinc      4096 Jan 22 06:02 shared
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc         0 Jan 22 06:02 boinc_setup_complete
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc      6377 Jan 22 06:02 init_data.xml
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc         0 Jan 22 06:02 boinc_lockfile
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc      2652 Jan 22 06:02 pandaJob.out
[2026-01-22 07:35:29] -rw------- 1 boinc boinc   1002771 Jan 22 06:03 agis_schedconf.cvmfs.json
[2026-01-22 07:35:29] -rw------- 1 boinc boinc   1516246 Jan 22 06:03 agis_ddmendpoints.agis.ALL.json
[2026-01-22 07:35:29] -rw------- 1 boinc boinc       427 Jan 22 06:03 workernode_map.json
[2026-01-22 07:35:29] drwx------ 5 boinc boinc      4096 Jan 22 06:03 pilot3
[2026-01-22 07:35:29] -rw------- 1 boinc boinc        95 Jan 22 07:34 pilot_heartbeat.json
[2026-01-22 07:35:29] -rw------- 1 boinc boinc 169565028 Jan 22 07:34 HITS.48299685._000394.pool.root.1
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc       529 Jan 22 07:34 boinc_task_state.xml
[2026-01-22 07:35:29] -rw------- 1 boinc boinc      1021 Jan 22 07:34 memory_monitor_summary.json
[2026-01-22 07:35:29] -rw------- 1 boinc boinc    284740 Jan 22 07:34 log.48299685._000394.job.log.tgz.1
[2026-01-22 07:35:29] -rw------- 1 boinc boinc      6302 Jan 22 07:34 heartbeat.json
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc        27 Jan 22 07:35 wrapper_checkpoint.txt
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc      8192 Jan 22 07:35 boinc_mmap_file
[2026-01-22 07:35:29] -rw------- 1 boinc boinc       747 Jan 22 07:35 pilotlog.txt
[2026-01-22 07:35:29] -rw------- 1 boinc boinc    801845 Jan 22 07:35 log.48299685._000394.job.log.1
[2026-01-22 07:35:29] -rw------- 1 boinc boinc       357 Jan 22 07:35 output.list
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc       620 Jan 22 07:35 runtime_log
[2026-01-22 07:35:29] -rw------- 1 boinc boinc   1105920 Jan 22 07:35 result.tar.gz
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc      8901 Jan 22 07:35 runtime_log.err
[2026-01-22 07:35:29] -rw------- 1 boinc boinc       658 Jan 22 07:35 7WxMDmHKk28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWQyKDm1O5s4m.diag
[2026-01-22 07:35:29] -rw-r--r-- 1 boinc boinc     11918 Jan 22 07:35 stderr.txt
[2026-01-22 07:35:29] HITS file was successfully produced:
[2026-01-22 07:35:29] -rw------- 1 boinc boinc 169565028 Jan 22 07:34 shared/HITS.pool.root.1
[2026-01-22 07:35:29]  *** Contents of shared directory: ***
[2026-01-22 07:35:29] total 413100
[2026-01-22 07:35:29] -rw-r--r-- 2 boinc boinc 251718185 Jan 22 06:02 ATLAS.root_0
[2026-01-22 07:35:29] -rw-r--r-- 2 boinc boinc    597794 Jan 22 06:02 input.tar.gz
[2026-01-22 07:35:29] -rw-r--r-- 2 boinc boinc     15845 Jan 22 06:02 start_atlas.sh
[2026-01-22 07:35:29] -rw------- 1 boinc boinc 169565028 Jan 22 07:34 HITS.pool.root.1
[2026-01-22 07:35:29] -rw------- 1 boinc boinc   1105920 Jan 22 07:35 result.tar.gz
07:35:30 (2304689): run_atlas exited; CPU time 20973.334311
07:35:30 (2304689): called boinc_finish(0)

</stderr_txt>
]]>

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