Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:55:15 (3632047): wrapper (7.7.26015): starting
00:55:15 (3632047): wrapper: running run_atlas (--nthreads 4)
[2026-01-22 00:55:15] Arguments: --nthreads 4
[2026-01-22 00:55:15] Threads: 4
[2026-01-22 00:55:15] Checking for CVMFS
[2026-01-22 00:55:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 00:55:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 00:55:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 00:55:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 00:55:16] 2.9.2.0 3269150 1881 97684 155392 1 188 33432608 36864000 0 130560 0 1080827 99.990 51883 13553 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-22 00:55:16] CVMFS is ok
[2026-01-22 00:55:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 00:55:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 00:55:16] Further information can be found at the LHC@home message board.
[2026-01-22 00:55:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 00:55:16] Checking for apptainer binary...
[2026-01-22 00:55:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 00:55:16] Running /usr/bin/apptainer --version
[2026-01-22 00:55:16] apptainer version 1.4.1-1.1
[2026-01-22 00:55:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 00:55:16] thA315b
[2026-01-22 00:55:16] apptainer works
[2026-01-22 00:55:16] Set ATHENA_PROC_NUMBER=4
[2026-01-22 00:55:16] Set ATHENA_CORE_NUMBER=4
[2026-01-22 00:55:16] Starting ATLAS job with PandaID=6978100357
[2026-01-22 00:55:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 02:49:42]  *** The last 200 lines of the pilot log: ***
[2026-01-22 02:49:42] 2026-01-22 01:49:11,546 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 02:49:42] 2026-01-22 01:49:11,546 | INFO     | collected zombie processes
[2026-01-22 02:49:42] 2026-01-22 01:49:11,546 | INFO     | will attempt to kill all subprocesses of pid=3640666
[2026-01-22 02:49:42] 2026-01-22 01:49:11,591 | INFO     | process IDs to be killed: [3640666] (in reverse order)
[2026-01-22 02:49:42] 2026-01-22 01:49:11,619 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 02:49:42] 2026-01-22 01:49:11,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 02:49:42] 2026-01-22 01:49:11,620 | INFO     | did not find any defunct processes belonging to 3640666
[2026-01-22 02:49:42] 2026-01-22 01:49:11,621 | INFO     | did not find any defunct processes belonging to 3640666
[2026-01-22 02:49:42] 2026-01-22 01:49:11,621 | INFO     | ready for new job
[2026-01-22 02:49:42] 2026-01-22 01:49:11,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 02:49:42] 2026-01-22 01:49:11,622 | INFO     | **************************************
[2026-01-22 02:49:42] 2026-01-22 01:49:11,622 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 02:49:42] 2026-01-22 01:49:11,622 | INFO     | **************************************
[2026-01-22 02:49:42] 2026-01-22 01:49:11,622 | INFO     | 
[2026-01-22 02:49:42] 2026-01-22 01:49:11,622 | INFO     | architecture information:
[2026-01-22 02:49:42] 2026-01-22 01:49:11,623 | INFO     | executing command: cat /etc/os-release
[2026-01-22 02:49:42] 2026-01-22 01:49:11,632 | INFO     | cat /etc/os-release:
[2026-01-22 02:49:42] NAME="CentOS Linux"
[2026-01-22 02:49:42] VERSION="7 (Core)"
[2026-01-22 02:49:42] ID="centos"
[2026-01-22 02:49:42] ID_LIKE="rhel fedora"
[2026-01-22 02:49:42] VERSION_ID="7"
[2026-01-22 02:49:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 02:49:42] ANSI_COLOR="0;31"
[2026-01-22 02:49:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 02:49:42] HOME_URL="https://www.centos.org/"
[2026-01-22 02:49:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 02:49:42] 
[2026-01-22 02:49:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 02:49:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 02:49:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 02:49:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 02:49:42] 
[2026-01-22 02:49:42] 2026-01-22 01:49:11,632 | INFO     | **************************************
[2026-01-22 02:49:42] 2026-01-22 01:49:12,136 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-22 02:49:42] 2026-01-22 01:49:12,149 | INFO     | sufficient remaining disk space (326570606592 B)
[2026-01-22 02:49:42] 2026-01-22 01:49:12,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 02:49:42] 2026-01-22 01:49:12,149 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 02:49:42] 2026-01-22 01:49:12,149 | INFO     | update_server=False
[2026-01-22 02:49:42] 2026-01-22 01:49:12,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 02:49:42] 2026-01-22 01:49:12,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 02:49:42] 2026-01-22 01:49:12,150 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 02:49:42] 2026-01-22 01:49:12,226 | INFO     | all payload control threads have been joined
[2026-01-22 02:49:42] 2026-01-22 01:49:12,283 | INFO     | all job control threads have been joined
[2026-01-22 02:49:42] 2026-01-22 01:49:12,985 | INFO     | all data control threads have been joined
[2026-01-22 02:49:42] 2026-01-22 01:49:13,138 | WARNING  | process 3640666 can no longer be monitored (due to stat problems) - aborting
[2026-01-22 02:49:42] 2026-01-22 01:49:13,155 | INFO     | [job] retrieve thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:13,155 | INFO     | [job] queue monitor thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:13,169 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 02:49:42] 2026-01-22 01:49:13,208 | INFO     | number of running child processes to parent process 3640666: 1
[2026-01-22 02:49:42] 2026-01-22 01:49:13,208 | INFO     | maximum number of monitored processes: 6
[2026-01-22 02:49:42] 2026-01-22 01:49:13,208 | INFO     | aborting job monitoring since job object (job id=6978100357) has expired
[2026-01-22 02:49:42] 2026-01-22 01:49:13,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 02:49:42] 2026-01-22 01:49:13,208 | INFO     | will abort loop
[2026-01-22 02:49:42] 2026-01-22 01:49:13,232 | INFO     | [payload] control thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:13,289 | INFO     | [job] control thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:13,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 02:49:42] 2026-01-22 01:49:13,669 | INFO     | [payload] validate_post thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:13,935 | INFO     | [job] validate thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:13,991 | INFO     | [data] control thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:14,029 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:14,033 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:14,213 | INFO     | [job] job monitor thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:14,264 | INFO     | [data] copytool_in thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:14,595 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:14,752 | INFO     | [payload] failed_post thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:15,302 | INFO     | [data] copytool_out thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:16,156 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:22,870 | INFO     | job.realtimelogging is not enabled
[2026-01-22 02:49:42] 2026-01-22 01:49:23,876 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 02:49:42] 2026-01-22 01:49:36,038 | INFO     | [monitor] cgroup control has ended
[2026-01-22 02:49:42] 2026-01-22 01:49:37,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140101672765248)>', '<ExcThread(monitor, started 140100893669120)>']
[2026-01-22 02:49:42] 2026-01-22 01:49:41,877 | INFO     | PID=3636172 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-22 02:49:42] 2026-01-22 01:49:41,877 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 02:49:42] 2026-01-22 01:49:41,877 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 02:49:42] 2026-01-22 01:49:41,877 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 02:49:42] 2026-01-22 01:49:41,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 02:49:42] 2026-01-22 01:49:41,877 | INFO     | [monitor] control thread has ended
[2026-01-22 02:49:42] 2026-01-22 01:49:42,614 | INFO     | all workflow threads have been joined
[2026-01-22 02:49:42] 2026-01-22 01:49:42,614 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 02:49:42] 2026-01-22 01:49:42,615 | INFO     | traces error code: 0
[2026-01-22 02:49:42] 2026-01-22 01:49:42,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 02:49:42] 2026-01-22 01:49:42,666 [wrapper] ==== pilot stdout END ====
[2026-01-22 02:49:42] 2026-01-22 01:49:42,669 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 02:49:42] 2026-01-22 01:49:42,672 [wrapper] pilotpid: 3636172
[2026-01-22 02:49:42] 2026-01-22 01:49:42,674 [wrapper] Pilot exit status: 0
[2026-01-22 02:49:42] 2026-01-22 01:49:42,682 [wrapper] pandaids: 6978100357
[2026-01-22 02:49:42] 2026-01-22 01:49:42,700 [wrapper] cleanup supervisor_pilot 3645719 3636173
[2026-01-22 02:49:42] 2026-01-22 01:49:42,703 [wrapper] Test setup, not cleaning
[2026-01-22 02:49:42] 2026-01-22 01:49:42,705 [wrapper] apfmon messages muted
[2026-01-22 02:49:42] 2026-01-22 01:49:42,708 [wrapper] ==== wrapper stdout END ====
[2026-01-22 02:49:42] 2026-01-22 01:49:42,710 [wrapper] ==== wrapper stderr END ====
[2026-01-22 02:49:42]  *** Error codes and diagnostics ***
[2026-01-22 02:49:42]     "exeErrorCode": 0,
[2026-01-22 02:49:42]     "exeErrorDiag": "",
[2026-01-22 02:49:42]     "pilotErrorCode": 0,
[2026-01-22 02:49:42]     "pilotErrorDiag": "",
[2026-01-22 02:49:42]  *** Listing of results directory ***
[2026-01-22 02:49:42] total 712064
[2026-01-22 02:49:42] -rwx------ 1 boinc boinc     36322 Jan 21 17:32 runpilot2-wrapper.sh
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc      5111 Jan 21 17:33 queuedata.json
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc    584422 Jan 21 17:33 pilot3.tar.gz
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc       100 Jan 22 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 02:49:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 22 00:55 run_atlas
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc       105 Jan 22 00:55 job.xml
[2026-01-22 02:49:42] -rw-r--r-- 2 boinc boinc 355164142 Jan 22 00:55 EVNT.48313010._000005.pool.root.1
[2026-01-22 02:49:42] -rw-r--r-- 2 boinc boinc    597765 Jan 22 00:55 input.tar.gz
[2026-01-22 02:49:42] -rw-r--r-- 2 boinc boinc     15845 Jan 22 00:55 start_atlas.sh
[2026-01-22 02:49:42] drwxrwx--x 2 boinc boinc      4096 Jan 22 00:55 shared
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc         0 Jan 22 00:55 boinc_setup_complete
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc      6443 Jan 22 00:55 init_data.xml
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc         0 Jan 22 00:55 boinc_lockfile
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc      2626 Jan 22 00:55 pandaJob.out
[2026-01-22 02:49:42] -rw------- 1 boinc boinc   1002771 Jan 22 00:55 agis_schedconf.cvmfs.json
[2026-01-22 02:49:42] -rw------- 1 boinc boinc   1516246 Jan 22 00:55 agis_ddmendpoints.agis.ALL.json
[2026-01-22 02:49:42] -rw------- 1 boinc boinc       424 Jan 22 00:55 workernode_map.json
[2026-01-22 02:49:42] drwx------ 5 boinc boinc      4096 Jan 22 00:55 pilot3
[2026-01-22 02:49:42] -rw------- 1 boinc boinc 367356227 Jan 22 02:48 HITS.48313012._000103.pool.root.1
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc       530 Jan 22 02:48 boinc_task_state.xml
[2026-01-22 02:49:42] -rw------- 1 boinc boinc        95 Jan 22 02:48 pilot_heartbeat.json
[2026-01-22 02:49:42] -rw------- 1 boinc boinc      1011 Jan 22 02:49 memory_monitor_summary.json
[2026-01-22 02:49:42] -rw------- 1 boinc boinc    374239 Jan 22 02:49 log.48313012._000103.job.log.tgz.1
[2026-01-22 02:49:42] -rw------- 1 boinc boinc      6291 Jan 22 02:49 heartbeat.json
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc        27 Jan 22 02:49 wrapper_checkpoint.txt
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc      8192 Jan 22 02:49 boinc_mmap_file
[2026-01-22 02:49:42] -rw------- 1 boinc boinc      5344 Jan 22 02:49 pilotlog.txt
[2026-01-22 02:49:42] -rw------- 1 boinc boinc    982885 Jan 22 02:49 log.48313012._000103.job.log.1
[2026-01-22 02:49:42] -rw------- 1 boinc boinc       357 Jan 22 02:49 output.list
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc       620 Jan 22 02:49 runtime_log
[2026-01-22 02:49:42] -rw------- 1 boinc boinc   1372160 Jan 22 02:49 result.tar.gz
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc      8901 Jan 22 02:49 runtime_log.err
[2026-01-22 02:49:42] -rw------- 1 boinc boinc       658 Jan 22 02:49 MnaLDmjJq28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsGsKDm7Vqvcm.diag
[2026-01-22 02:49:42] -rw-r--r-- 1 boinc boinc     11141 Jan 22 02:49 stderr.txt
[2026-01-22 02:49:42] HITS file was successfully produced:
[2026-01-22 02:49:42] -rw------- 1 boinc boinc 367356227 Jan 22 02:48 shared/HITS.pool.root.1
[2026-01-22 02:49:42]  *** Contents of shared directory: ***
[2026-01-22 02:49:42] total 707536
[2026-01-22 02:49:42] -rw-r--r-- 2 boinc boinc 355164142 Jan 22 00:55 ATLAS.root_0
[2026-01-22 02:49:42] -rw-r--r-- 2 boinc boinc    597765 Jan 22 00:55 input.tar.gz
[2026-01-22 02:49:42] -rw-r--r-- 2 boinc boinc     15845 Jan 22 00:55 start_atlas.sh
[2026-01-22 02:49:42] -rw------- 1 boinc boinc 367356227 Jan 22 02:48 HITS.pool.root.1
[2026-01-22 02:49:42] -rw------- 1 boinc boinc   1372160 Jan 22 02:49 result.tar.gz
02:49:44 (3632047): run_atlas exited; CPU time 26189.221776
02:49:44 (3632047): called boinc_finish(0)

</stderr_txt>
]]>

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