Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:44:10 (1090017): wrapper (7.7.26015): starting
08:44:10 (1090017): wrapper: running run_atlas (--nthreads 2)
[2026-01-22 08:44:10] Arguments: --nthreads 2
[2026-01-22 08:44:10] Threads: 2
[2026-01-22 08:44:10] Checking for CVMFS
[2026-01-22 08:44:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 08:44:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 08:44:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 08:44:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 08:44:10] 2.9.2.0 878484 2021 57004 155392 0 188 19891090 36864000 0 130560 0 611084 99.984 42035 14058 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-22 08:44:10] CVMFS is ok
[2026-01-22 08:44:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 08:44:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 08:44:10] Further information can be found at the LHC@home message board.
[2026-01-22 08:44:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 08:44:10] Checking for apptainer binary...
[2026-01-22 08:44:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 08:44:10] Running /usr/bin/apptainer --version
[2026-01-22 08:44:10] apptainer version 1.4.1-1.1
[2026-01-22 08:44:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 08:44:10] madmaxA277a
[2026-01-22 08:44:10] apptainer works
[2026-01-22 08:44:10] Set ATHENA_PROC_NUMBER=2
[2026-01-22 08:44:10] Set ATHENA_CORE_NUMBER=2
[2026-01-22 08:44:10] Starting ATLAS job with PandaID=6978100255
[2026-01-22 08:44:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 12:28:55]  *** The last 200 lines of the pilot log: ***
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | job 6978100255 has completed (purged errors)
[2026-01-22 12:28:55] 2026-01-22 11:28:19,302 | INFO     | overall cleanup function is called
[2026-01-22 12:28:55] 2026-01-22 11:28:20,308 | INFO     | --- collectZombieJob: --- 10, [1098452]
[2026-01-22 12:28:55] 2026-01-22 11:28:20,309 | INFO     | zombie collector waiting for pid 1098452
[2026-01-22 12:28:55] 2026-01-22 11:28:20,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 12:28:55] 2026-01-22 11:28:20,309 | INFO     | collected zombie processes
[2026-01-22 12:28:55] 2026-01-22 11:28:20,309 | INFO     | will attempt to kill all subprocesses of pid=1098452
[2026-01-22 12:28:55] 2026-01-22 11:28:20,341 | INFO     | process IDs to be killed: [1098452] (in reverse order)
[2026-01-22 12:28:55] 2026-01-22 11:28:20,362 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 12:28:55] 2026-01-22 11:28:20,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 12:28:55] 2026-01-22 11:28:20,362 | INFO     | did not find any defunct processes belonging to 1098452
[2026-01-22 12:28:55] 2026-01-22 11:28:20,363 | INFO     | did not find any defunct processes belonging to 1098452
[2026-01-22 12:28:55] 2026-01-22 11:28:20,363 | INFO     | ready for new job
[2026-01-22 12:28:55] 2026-01-22 11:28:20,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 12:28:55] 2026-01-22 11:28:20,364 | INFO     | **************************************
[2026-01-22 12:28:55] 2026-01-22 11:28:20,364 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 12:28:55] 2026-01-22 11:28:20,364 | INFO     | **************************************
[2026-01-22 12:28:55] 2026-01-22 11:28:20,364 | INFO     | 
[2026-01-22 12:28:55] 2026-01-22 11:28:20,364 | INFO     | architecture information:
[2026-01-22 12:28:55] 2026-01-22 11:28:20,364 | INFO     | executing command: cat /etc/os-release
[2026-01-22 12:28:55] 2026-01-22 11:28:20,372 | INFO     | cat /etc/os-release:
[2026-01-22 12:28:55] NAME="CentOS Linux"
[2026-01-22 12:28:55] VERSION="7 (Core)"
[2026-01-22 12:28:55] ID="centos"
[2026-01-22 12:28:55] ID_LIKE="rhel fedora"
[2026-01-22 12:28:55] VERSION_ID="7"
[2026-01-22 12:28:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 12:28:55] ANSI_COLOR="0;31"
[2026-01-22 12:28:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 12:28:55] HOME_URL="https://www.centos.org/"
[2026-01-22 12:28:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 12:28:55] 
[2026-01-22 12:28:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 12:28:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 12:28:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 12:28:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 12:28:55] 
[2026-01-22 12:28:55] 2026-01-22 11:28:20,373 | INFO     | **************************************
[2026-01-22 12:28:55] 2026-01-22 11:28:20,876 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | INFO     | sufficient remaining disk space (497928896512 B)
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | INFO     | update_server=False
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 12:28:55] 2026-01-22 11:28:20,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 12:28:55] 2026-01-22 11:28:20,889 | INFO     | aborting loop
[2026-01-22 12:28:55] 2026-01-22 11:28:21,265 | INFO     | all data control threads have been joined
[2026-01-22 12:28:55] 2026-01-22 11:28:21,793 | INFO     | all payload control threads have been joined
[2026-01-22 12:28:55] 2026-01-22 11:28:21,894 | INFO     | [job] retrieve thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:21,895 | INFO     | [job] queue monitor thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:21,895 | INFO     | [job] job monitor thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:21,928 | INFO     | [data] copytool_in thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:22,049 | INFO     | all job control threads have been joined
[2026-01-22 12:28:55] 2026-01-22 11:28:22,271 | INFO     | [data] control thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:22,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 12:28:55] 2026-01-22 11:28:22,422 | INFO     | [payload] failed_post thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:22,484 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:22,798 | INFO     | [payload] control thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:22,894 | INFO     | [data] copytool_out thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:22,899 | INFO     | [job] validate thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:23,010 | INFO     | [payload] validate_post thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:23,055 | INFO     | [job] control thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:23,162 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:23,330 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:26,310 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:31,754 | INFO     | job.realtimelogging is not enabled
[2026-01-22 12:28:55] 2026-01-22 11:28:32,760 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 12:28:55] 2026-01-22 11:28:49,953 | INFO     | [monitor] cgroup control has ended
[2026-01-22 12:28:55] 2026-01-22 11:28:50,529 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520821745472)>', '<ExcThread(monitor, started 140520189851392)>']
[2026-01-22 12:28:55] 2026-01-22 11:28:51,746 | INFO     | PID=1094045 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-22 12:28:55] 2026-01-22 11:28:51,746 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 12:28:55] 2026-01-22 11:28:51,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 12:28:55] 2026-01-22 11:28:51,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 12:28:55] 2026-01-22 11:28:51,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 12:28:55] 2026-01-22 11:28:51,746 | INFO     | [monitor] control thread has ended
[2026-01-22 12:28:55] 2026-01-22 11:28:55,555 | INFO     | all workflow threads have been joined
[2026-01-22 12:28:55] 2026-01-22 11:28:55,555 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 12:28:55] 2026-01-22 11:28:55,555 | INFO     | traces error code: 0
[2026-01-22 12:28:55] 2026-01-22 11:28:55,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 12:28:55] 2026-01-22 11:28:55,596 [wrapper] ==== pilot stdout END ====
[2026-01-22 12:28:55] 2026-01-22 11:28:55,598 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 12:28:55] 2026-01-22 11:28:55,600 [wrapper] pilotpid: 1094045
[2026-01-22 12:28:55] 2026-01-22 11:28:55,602 [wrapper] Pilot exit status: 0
[2026-01-22 12:28:55] 2026-01-22 11:28:55,608 [wrapper] pandaids: 6978100255
[2026-01-22 12:28:55] 2026-01-22 11:28:55,620 [wrapper] cleanup supervisor_pilot 1103726 1094046
[2026-01-22 12:28:55] 2026-01-22 11:28:55,622 [wrapper] Test setup, not cleaning
[2026-01-22 12:28:55] 2026-01-22 11:28:55,624 [wrapper] apfmon messages muted
[2026-01-22 12:28:55] 2026-01-22 11:28:55,626 [wrapper] ==== wrapper stdout END ====
[2026-01-22 12:28:55] 2026-01-22 11:28:55,628 [wrapper] ==== wrapper stderr END ====
[2026-01-22 12:28:55]  *** Error codes and diagnostics ***
[2026-01-22 12:28:55]     "exeErrorCode": 0,
[2026-01-22 12:28:55]     "exeErrorDiag": "",
[2026-01-22 12:28:55]     "pilotErrorCode": 0,
[2026-01-22 12:28:55]     "pilotErrorDiag": "",
[2026-01-22 12:28:55]  *** Listing of results directory ***
[2026-01-22 12:28:55] total 711000
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc    584422 Jan 21 17:31 pilot3.tar.gz
[2026-01-22 12:28:55] -rwx------ 1 boinc boinc     36322 Jan 21 17:32 runpilot2-wrapper.sh
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc      5111 Jan 21 17:32 queuedata.json
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc       100 Jan 22 08:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 12:28:55] -rwxr-xr-x 1 boinc boinc      7986 Jan 22 08:44 run_atlas
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc       105 Jan 22 08:44 job.xml
[2026-01-22 12:28:55] -rw-r--r-- 2 boinc boinc 359126010 Jan 22 08:44 EVNT.48313010._000001.pool.root.1
[2026-01-22 12:28:55] -rw-r--r-- 2 boinc boinc    597749 Jan 22 08:44 input.tar.gz
[2026-01-22 12:28:55] -rw-r--r-- 2 boinc boinc     15845 Jan 22 08:44 start_atlas.sh
[2026-01-22 12:28:55] drwxrwx--x 2 boinc boinc      4096 Jan 22 08:44 shared
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc         0 Jan 22 08:44 boinc_setup_complete
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc      6210 Jan 22 08:44 init_data.xml
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc         0 Jan 22 08:44 boinc_lockfile
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc      2616 Jan 22 08:44 pandaJob.out
[2026-01-22 12:28:55] -rw------- 1 boinc boinc   1002771 Jan 22 08:44 agis_schedconf.cvmfs.json
[2026-01-22 12:28:55] -rw------- 1 boinc boinc       424 Jan 22 08:44 workernode_map.json
[2026-01-22 12:28:55] drwx------ 5 boinc boinc      4096 Jan 22 08:44 pilot3
[2026-01-22 12:28:55] -rw------- 1 boinc boinc 360339503 Jan 22 12:27 HITS.48313012._000001.pool.root.1
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc       531 Jan 22 12:27 boinc_task_state.xml
[2026-01-22 12:28:55] -rw------- 1 boinc boinc      1021 Jan 22 12:28 memory_monitor_summary.json
[2026-01-22 12:28:55] -rw------- 1 boinc boinc   1516246 Jan 22 12:28 agis_ddmendpoints.agis.ALL.json
[2026-01-22 12:28:55] -rw------- 1 boinc boinc    435972 Jan 22 12:28 log.48313012._000001.job.log.tgz.1
[2026-01-22 12:28:55] -rw------- 1 boinc boinc      6291 Jan 22 12:28 heartbeat.json
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc      8192 Jan 22 12:28 boinc_mmap_file
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc        28 Jan 22 12:28 wrapper_checkpoint.txt
[2026-01-22 12:28:55] -rw------- 1 boinc boinc        95 Jan 22 12:28 pilot_heartbeat.json
[2026-01-22 12:28:55] -rw------- 1 boinc boinc      4820 Jan 22 12:28 pilotlog.txt
[2026-01-22 12:28:55] -rw------- 1 boinc boinc   1899687 Jan 22 12:28 log.48313012._000001.job.log.1
[2026-01-22 12:28:55] -rw------- 1 boinc boinc       357 Jan 22 12:28 output.list
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc       620 Jan 22 12:28 runtime_log
[2026-01-22 12:28:55] -rw------- 1 boinc boinc   2355200 Jan 22 12:28 result.tar.gz
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc      8922 Jan 22 12:28 runtime_log.err
[2026-01-22 12:28:55] -rw------- 1 boinc boinc       666 Jan 22 12:28 jXuMDm3Iq28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxFsKDmS3TxXm.diag
[2026-01-22 12:28:55] -rw-r--r-- 1 boinc boinc     11714 Jan 22 12:28 stderr.txt
[2026-01-22 12:28:55] HITS file was successfully produced:
[2026-01-22 12:28:55] -rw------- 1 boinc boinc 360339503 Jan 22 12:27 shared/HITS.pool.root.1
[2026-01-22 12:28:55]  *** Contents of shared directory: ***
[2026-01-22 12:28:55] total 705516
[2026-01-22 12:28:55] -rw-r--r-- 2 boinc boinc 359126010 Jan 22 08:44 ATLAS.root_0
[2026-01-22 12:28:55] -rw-r--r-- 2 boinc boinc    597749 Jan 22 08:44 input.tar.gz
[2026-01-22 12:28:55] -rw-r--r-- 2 boinc boinc     15845 Jan 22 08:44 start_atlas.sh
[2026-01-22 12:28:55] -rw------- 1 boinc boinc 360339503 Jan 22 12:27 HITS.pool.root.1
[2026-01-22 12:28:55] -rw------- 1 boinc boinc   2355200 Jan 22 12:28 result.tar.gz
12:28:57 (1090017): run_atlas exited; CPU time 26410.551757
12:28:57 (1090017): called boinc_finish(0)

</stderr_txt>
]]>

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