Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:27:54 (26530): wrapper (7.7.26015): starting
00:27:54 (26530): wrapper: running run_atlas (--nthreads 8)
[2026-01-22 00:27:54] Arguments: --nthreads 8
[2026-01-22 00:27:54] Threads: 8
[2026-01-22 00:27:54] Checking for CVMFS
[2026-01-22 00:27:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 00:27:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 00:27:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 00:27:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 00:27:55] 2.11.0.0 7941 146975 92904 155392 0 188 2184342 4096000 3615 130560 3 8363142 99.316 10544054 517 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-22 00:27:55] CVMFS is ok
[2026-01-22 00:27:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 00:27:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 00:27:55] Further information can be found at the LHC@home message board.
[2026-01-22 00:27:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 00:27:55] Checking for apptainer binary...
[2026-01-22 00:27:55] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-22 00:27:55] apptainer is not installed, using version from CVMFS
[2026-01-22 00:27:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 00:27:55] WARNING: Environment variable TMPDIR already has value [/tmp/job_11035990/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node090
[2026-01-22 00:27:55] apptainer works
[2026-01-22 00:27:55] Set ATHENA_PROC_NUMBER=8
[2026-01-22 00:27:55] Set ATHENA_CORE_NUMBER=8
[2026-01-22 00:27:55] Starting ATLAS job with PandaID=6976934949
[2026-01-22 00:27:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11035990/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 01:12:12]  *** The last 200 lines of the pilot log: ***
[2026-01-22 01:12:12]  lfn=log.48299517._000858.job.log.tgz.1
[2026-01-22 01:12:12]  mtime=0
[2026-01-22 01:12:12]  protocol_id=None
[2026-01-22 01:12:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-22 01:12:12]  replicas=None
[2026-01-22 01:12:12]  scope=mc23_13p6TeV
[2026-01-22 01:12:12]  status=None
[2026-01-22 01:12:12]  status_code=0
[2026-01-22 01:12:12]  storage_token=
[2026-01-22 01:12:12]  surl=/tmp/job_11035990/atlas/pilot/slots/0/PanDA_Pilot-6976934949/log.48299517._000858.job.log.tgz.1
[2026-01-22 01:12:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/12/log.48299517._000858.job.log.tgz.1
[2026-01-22 01:12:12]  workdir=None
[2026-01-22 01:12:12] ]
[2026-01-22 01:12:12] 2026-01-22 00:11:08,867 | INFO     | transferring file log.48299517._000858.job.log.tgz.1 from /tmp/job_11035990/atlas/pilot/slots/0/PanDA_Pilot-6976934949/log.48299517._000858.job.log.tgz.1 to /tmp/j
[2026-01-22 01:12:12] 2026-01-22 00:11:08,868 | INFO     | executing command: /usr/bin/env mv /tmp/job_11035990/atlas/pilot/slots/0/PanDA_Pilot-6976934949/log.48299517._000858.job.log.tgz.1 /tmp/job_11035990/atlas/pilot/sl
[2026-01-22 01:12:12] 2026-01-22 00:11:08,876 | INFO     | adding to output.list: log.48299517._000858.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/12/log.48299517._000858.job.log.tg
[2026-01-22 01:12:12] 2026-01-22 00:11:08,876 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-22 01:12:12] 2026-01-22 00:11:08,876 | INFO     | summary of transferred files:
[2026-01-22 01:12:12] 2026-01-22 00:11:08,876 | INFO     |  -- lfn=log.48299517._000858.job.log.tgz.1, status_code=0, status=transferred
[2026-01-22 01:12:12] 2026-01-22 00:11:08,876 | INFO     | stage-out finished correctly
[2026-01-22 01:12:12] 2026-01-22 00:11:09,054 | INFO     | PID=30349 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-22 01:12:12] 2026-01-22 00:11:09,054 | INFO     | .. there are 3 such processes running
[2026-01-22 01:12:12] 2026-01-22 00:11:10,055 | INFO     | time since job start (2588s) is within the limit (349056.0s)
[2026-01-22 01:12:12] 2026-01-22 00:11:10,619 | INFO     | monitor loop #199: job 0:6976934949 is in state 'finished'
[2026-01-22 01:12:12] 2026-01-22 00:11:10,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 01:12:12] 2026-01-22 00:11:11,367 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-22 01:12:12] 2026-01-22 00:11:12,060 | INFO     | time since job start (2590s) is within the limit (349056.0s)
[2026-01-22 01:12:12] 2026-01-22 00:11:13,122 | INFO     | monitor loop #200: job 0:6976934949 is in state 'finished'
[2026-01-22 01:12:12] 2026-01-22 00:11:13,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,065 | INFO     | time since job start (2592s) is within the limit (349056.0s)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,359 | INFO     | job 6976934949 has state=finished
[2026-01-22 01:12:12] 2026-01-22 00:11:14,359 | INFO     | preparing for final server update for job 6976934949 in state='finished'
[2026-01-22 01:12:12] 2026-01-22 00:11:14,359 | INFO     | reading metadata from: /tmp/job_11035990/atlas/pilot/slots/0/PanDA_Pilot-6976934949/jobReport.json
[2026-01-22 01:12:12] 2026-01-22 00:11:14,360 | INFO     | added worker_node to metadata from /tmp/job_11035990/atlas/pilot/slots/0/workernode_map.json
[2026-01-22 01:12:12] 2026-01-22 00:11:14,360 | INFO     | this job has now completed (state=finished)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,360 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,360 | INFO     | log transfer has been attempted: DONE
[2026-01-22 01:12:12] 2026-01-22 00:11:14,360 | INFO     | job 6976934949 has finished - writing final server update
[2026-01-22 01:12:12] 2026-01-22 00:11:14,361 | INFO     | total number of processed events: 400 (read)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,378 | INFO     | using path: /tmp/job_11035990/atlas/pilot/slots/0/PanDA_Pilot-6976934949/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,379 | INFO     | extracted standard info from prmon json
[2026-01-22 01:12:12] 2026-01-22 00:11:14,379 | INFO     | extracted standard memory fields from prmon json
[2026-01-22 01:12:12] 2026-01-22 00:11:14,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-22 01:12:12] 2026-01-22 00:11:14,379 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-22 01:12:12] 2026-01-22 00:11:14,379 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | fitting pss+swap vs Time
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | sum of square deviations: 14456085.0
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | sum of deviations: 312884677.00000006
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | mean x: 1769039470.5
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | mean y: 2615762.8333333335
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | intersect: -38286128619.0407
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | chi2: 0.00015036547515689217
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | current memory leak: 21.64 B/s (using 36 data points, chi2=0.00)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | could have reported an average CPU frequency of 2676 MHz (5 samples)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | ..............................
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . Timing measurements:
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . get job = 0 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . initial setup = 2 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . payload setup = 2 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . stage-in = 0 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . payload execution = 2568 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . stage-out = 0 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,380 | INFO     | . log creation = 0 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,381 | INFO     | ..............................
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | 
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | job summary report
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | --------------------------------------------------
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | PanDA job id: 6976934949
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | task id: 48299517
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | errors: (none)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | pilot state: finished 
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | transexitcode: 0
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | exeerrorcode: 0
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | exeerrordiag: 
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | exitcode: 0
[2026-01-22 01:12:12] 2026-01-22 00:11:14,426 | INFO     | exitmsg: OK
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | cpuconsumptiontime: 18540 s
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | nevents: 400
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | neventsw: 0
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | pid: 2959
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | pgrp: 2959
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | corecount: 8
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | event service: False
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | sizes: {0: 2283914, 1: 2284486, 11: 2284486, 2575: 2309833, 2576: 2318861, 2579: 2318917, 2582: 2319271}
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | --------------------------------------------------
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | 
[2026-01-22 01:12:12] 2026-01-22 00:11:14,427 | INFO     | executing command: ls -lF /tmp/job_11035990/atlas/pilot/slots/0
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,437 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-22 01:12:12] 2026-01-22 00:11:14,438 | INFO     | job 6976934949 has completed (purged errors)
[2026-01-22 01:12:12] 2026-01-22 00:11:14,438 | INFO     | overall cleanup function is called
[2026-01-22 01:12:12] 2026-01-22 00:11:15,443 | INFO     | --- collectZombieJob: --- 10, [2959]
[2026-01-22 01:12:12] 2026-01-22 00:11:15,444 | INFO     | zombie collector waiting for pid 2959
[2026-01-22 01:12:12] 2026-01-22 00:11:15,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-22 01:12:12] 2026-01-22 00:11:15,444 | INFO     | collected zombie processes
[2026-01-22 01:12:12] 2026-01-22 00:11:15,444 | INFO     | will attempt to kill all subprocesses of pid=2959
[2026-01-22 01:12:12] 2026-01-22 00:11:15,541 | INFO     | process IDs to be killed: [2959] (in reverse order)
[2026-01-22 01:12:12] 2026-01-22 00:11:15,576 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 01:12:12] 2026-01-22 00:11:15,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 01:12:12] 2026-01-22 00:11:15,580 | INFO     | did not find any defunct processes belonging to 2959
[2026-01-22 01:12:12] 2026-01-22 00:11:15,583 | INFO     | did not find any defunct processes belonging to 2959
[2026-01-22 01:12:12] 2026-01-22 00:11:15,583 | INFO     | ready for new job
[2026-01-22 01:12:12] 2026-01-22 00:11:15,583 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 01:12:12] 2026-01-22 00:11:15,584 | INFO     | **************************************
[2026-01-22 01:12:12] 2026-01-22 00:11:15,584 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 01:12:12] 2026-01-22 00:11:15,584 | INFO     | **************************************
[2026-01-22 01:12:12] 2026-01-22 00:11:15,584 | INFO     | 
[2026-01-22 01:12:12] 2026-01-22 00:11:15,598 | INFO     | architecture information:
[2026-01-22 01:12:12] 2026-01-22 00:11:15,598 | INFO     | executing command: cat /etc/os-release
[2026-01-22 01:12:12] 2026-01-22 00:11:15,604 | INFO     | cat /etc/os-release:
[2026-01-22 01:12:12] NAME="CentOS Linux"
[2026-01-22 01:12:12] VERSION="7 (Core)"
[2026-01-22 01:12:12] ID="centos"
[2026-01-22 01:12:12] ID_LIKE="rhel fedora"
[2026-01-22 01:12:12] VERSION_ID="7"
[2026-01-22 01:12:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 01:12:12] ANSI_COLOR="0;31"
[2026-01-22 01:12:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 01:12:12] HOME_URL="https://www.centos.org/"
[2026-01-22 01:12:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 01:12:12] 
[2026-01-22 01:12:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 01:12:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 01:12:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 01:12:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 01:12:12] 
[2026-01-22 01:12:12] 2026-01-22 00:11:15,605 | INFO     | **************************************
[2026-01-22 01:12:12] 2026-01-22 00:11:16,107 | INFO     | executing command: df -mP /tmp/job_11035990/atlas/pilot/slots/0
[2026-01-22 01:12:12] 2026-01-22 00:11:16,115 | INFO     | sufficient remaining disk space (225408188416 B)
[2026-01-22 01:12:12] 2026-01-22 00:11:16,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 01:12:12] 2026-01-22 00:11:16,115 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 01:12:12] 2026-01-22 00:11:16,115 | INFO     | update_server=False
[2026-01-22 01:12:12] 2026-01-22 00:11:16,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 01:12:12] 2026-01-22 00:11:16,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 01:12:12] 2026-01-22 00:11:16,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 01:12:12] 2026-01-22 00:11:16,630 | INFO     | aborting loop
[2026-01-22 01:12:12] 2026-01-22 00:11:16,920 | INFO     | all data control threads have been joined
[2026-01-22 01:12:12] 2026-01-22 00:11:16,937 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 01:12:12] 2026-01-22 00:11:17,120 | INFO     | [job] retrieve thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:17,120 | INFO     | [job] queue monitor thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:17,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 01:12:12] 2026-01-22 00:11:17,447 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:17,572 | INFO     | all payload control threads have been joined
[2026-01-22 01:12:12] 2026-01-22 00:11:17,635 | INFO     | [job] job monitor thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:17,736 | INFO     | all job control threads have been joined
[2026-01-22 01:12:12] 2026-01-22 00:11:17,837 | INFO     | [job] validate thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:17,925 | INFO     | [data] control thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,021 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,099 | INFO     | [payload] validate_post thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,183 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,383 | INFO     | [data] copytool_in thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,397 | INFO     | [payload] failed_post thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,578 | INFO     | [payload] control thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,741 | INFO     | [job] control thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:18,942 | INFO     | [data] copytool_out thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:21,425 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:27,121 | INFO     | job.realtimelogging is not enabled
[2026-01-22 01:12:12] 2026-01-22 00:11:28,126 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 01:12:12] 2026-01-22 00:11:47,254 | INFO     | PID=30349 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-22 01:12:12] 2026-01-22 00:11:47,254 | INFO     | .. there are 3 such processes running
[2026-01-22 01:12:12] 2026-01-22 00:11:47,255 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 01:12:12] 2026-01-22 00:11:47,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 01:12:12] 2026-01-22 00:11:47,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 01:12:12] 2026-01-22 00:12:05,743 | INFO     | [monitor] cgroup control has ended
[2026-01-22 01:12:12] 2026-01-22 00:12:06,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058980096)>']
[2026-01-22 01:12:12] 2026-01-22 00:12:07,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 01:12:12] 2026-01-22 00:12:07,350 | INFO     | [monitor] control thread has ended
[2026-01-22 01:12:12] 2026-01-22 00:12:11,919 | INFO     | all workflow threads have been joined
[2026-01-22 01:12:12] 2026-01-22 00:12:11,919 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 01:12:12] 2026-01-22 00:12:11,919 | INFO     | traces error code: 0
[2026-01-22 01:12:12] 2026-01-22 00:12:11,920 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 01:12:12] 2026-01-22 00:12:11,967 [wrapper] ==== pilot stdout END ====
[2026-01-22 01:12:12] 2026-01-22 00:12:11,968 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 01:12:12] 2026-01-22 00:12:11,969 [wrapper] pilotpid: 30349
[2026-01-22 01:12:12] 2026-01-22 00:12:11,970 [wrapper] Pilot exit status: 0
[2026-01-22 01:12:12] 2026-01-22 00:12:11,974 [wrapper] pandaids: 6976934949
[2026-01-22 01:12:12] 2026-01-22 00:12:11,997 [wrapper] cleanup supervisor_pilot 14131 30350
[2026-01-22 01:12:12] 2026-01-22 00:12:11,998 [wrapper] Test setup, not cleaning
[2026-01-22 01:12:12] 2026-01-22 00:12:11,999 [wrapper] apfmon messages muted
[2026-01-22 01:12:12] 2026-01-22 00:12:12,001 [wrapper] ==== wrapper stdout END ====
[2026-01-22 01:12:12] 2026-01-22 00:12:12,002 [wrapper] ==== wrapper stderr END ====
[2026-01-22 01:12:12]  *** Error codes and diagnostics ***
[2026-01-22 01:12:12]     "exeErrorCode": 0,
[2026-01-22 01:12:12]     "exeErrorDiag": "",
[2026-01-22 01:12:12]     "pilotErrorCode": 0,
[2026-01-22 01:12:12]     "pilotErrorDiag": "",
[2026-01-22 01:12:12]  *** Listing of results directory ***
[2026-01-22 01:12:12] total 422652
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user    584422 Jan 20 22:34 pilot3.tar.gz
[2026-01-22 01:12:12] -rwx------ 1 mf493845 unix-user     36322 Jan 20 22:37 runpilot2-wrapper.sh
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      5111 Jan 20 22:39 queuedata.json
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user       100 Jan 21 23:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 01:12:12] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 21 23:22 run_atlas
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user       105 Jan 21 23:22 job.xml
[2026-01-22 01:12:12] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 22 00:27 start_atlas.sh
[2026-01-22 01:12:12] drwxrwx--x 2 mf493845 unix-user       100 Jan 22 00:27 shared
[2026-01-22 01:12:12] -rw-r--r-- 2 mf493845 unix-user    597778 Jan 22 00:27 input.tar.gz
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      6389 Jan 22 00:27 init_data.xml
[2026-01-22 01:12:12] -rw-r--r-- 2 mf493845 unix-user 258792102 Jan 22 00:27 EVNT.48299515._000035.pool.root.1
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user         0 Jan 22 00:27 boinc_setup_complete
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      8192 Jan 22 00:27 boinc_mmap_file
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user         0 Jan 22 00:27 boinc_lockfile
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      2589 Jan 22 00:27 pandaJob.out
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user   1002771 Jan 22 00:27 agis_schedconf.cvmfs.json
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user   1516246 Jan 22 00:27 agis_ddmendpoints.agis.ALL.json
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user       416 Jan 22 00:28 workernode_map.json
[2026-01-22 01:12:12] drwx------ 5 mf493845 unix-user       440 Jan 22 00:28 pilot3
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user 168680355 Jan 22 01:10 HITS.48299517._000858.pool.root.1
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      1011 Jan 22 01:11 memory_monitor_summary.json
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user    284634 Jan 22 01:11 log.48299517._000858.job.log.tgz.1
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      6287 Jan 22 01:11 heartbeat.json
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user        95 Jan 22 01:11 pilot_heartbeat.json
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      4903 Jan 22 01:12 pilotlog.txt
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user    420245 Jan 22 01:12 log.48299517._000858.job.log.1
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user       357 Jan 22 01:12 output.list
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user       620 Jan 22 01:12 runtime_log
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user    727040 Jan 22 01:12 result.tar.gz
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user       637 Jan 22 01:12 x5GNDmGbY28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmS1wKDmmHfXHm.diag
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user      9219 Jan 22 01:12 runtime_log.err
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user     22225 Jan 22 01:12 stderr.txt
[2026-01-22 01:12:12] HITS file was successfully produced:
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user 168680355 Jan 22 01:10 shared/HITS.pool.root.1
[2026-01-22 01:12:12]  *** Contents of shared directory: ***
[2026-01-22 01:12:12] total 418768
[2026-01-22 01:12:12] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 22 00:27 start_atlas.sh
[2026-01-22 01:12:12] -rw-r--r-- 2 mf493845 unix-user    597778 Jan 22 00:27 input.tar.gz
[2026-01-22 01:12:12] -rw-r--r-- 2 mf493845 unix-user 258792102 Jan 22 00:27 ATLAS.root_0
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user 168680355 Jan 22 01:10 HITS.pool.root.1
[2026-01-22 01:12:12] -rw------- 1 mf493845 unix-user    727040 Jan 22 01:12 result.tar.gz
01:12:13 (26530): run_atlas exited; CPU time 18576.215123
01:12:13 (26530): called boinc_finish(0)

</stderr_txt>
]]>

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