Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:04:34 (12419): wrapper (7.7.26015): starting
13:04:34 (12419): wrapper: running run_atlas (--nthreads 12)
[2026-01-21 13:04:34] Arguments: --nthreads 12
[2026-01-21 13:04:34] Threads: 12
[2026-01-21 13:04:34] Checking for CVMFS
[2026-01-21 13:04:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 13:04:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 13:04:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 13:04:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 13:04:35] 2.11.2.0 3103 158633 100132 155392 0 188 11786127 20275200 1 130560 0 63900145 99.910 8795202 29920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-21 13:04:35] CVMFS is ok
[2026-01-21 13:04:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 13:04:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 13:04:35] Further information can be found at the LHC@home message board.
[2026-01-21 13:04:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 13:04:35] Checking for apptainer binary...
[2026-01-21 13:04:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 13:04:35] Running /usr/bin/apptainer --version
[2026-01-21 13:04:35] apptainer version 1.3.2-1.el7
[2026-01-21 13:04:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 13:04:37] c-115-41.aglt2.org
[2026-01-21 13:04:37] apptainer works
[2026-01-21 13:04:37] Set ATHENA_PROC_NUMBER=12
[2026-01-21 13:04:37] Set ATHENA_CORE_NUMBER=12
[2026-01-21 13:04:37] Starting ATLAS job with PandaID=6969263959
[2026-01-21 13:04:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 13:48:01]  *** The last 200 lines of the pilot log: ***
[2026-01-21 13:48:01]  mtime=0
[2026-01-21 13:48:01]  protocol_id=None
[2026-01-21 13:48:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-21 13:48:01]  replicas=None
[2026-01-21 13:48:01]  scope=mc23_13p6TeV
[2026-01-21 13:48:01]  status=None
[2026-01-21 13:48:01]  status_code=0
[2026-01-21 13:48:01]  storage_token=
[2026-01-21 13:48:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969263959/log.48215263._004040.job.log.tgz.1
[2026-01-21 13:48:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/f3/log.48215263._004040.job.log.tgz.1
[2026-01-21 13:48:01]  workdir=None
[2026-01-21 13:48:01] ]
[2026-01-21 13:48:01] 2026-01-21 18:47:13,276 | INFO     | transferring file log.48215263._004040.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969263959/log.48215263._004040.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-21 13:48:01] 2026-01-21 18:47:13,277 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969263959/log.48215263._004040.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._004040.job
[2026-01-21 13:48:01] 2026-01-21 18:47:13,299 | INFO     | adding to output.list: log.48215263._004040.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/f3/log.48215263._004040.job.log.tg
[2026-01-21 13:48:01] 2026-01-21 18:47:13,300 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 13:48:01] 2026-01-21 18:47:13,301 | INFO     | summary of transferred files:
[2026-01-21 13:48:01] 2026-01-21 18:47:13,301 | INFO     |  -- lfn=log.48215263._004040.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 13:48:01] 2026-01-21 18:47:13,301 | INFO     | stage-out finished correctly
[2026-01-21 13:48:01] 2026-01-21 18:47:13,413 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 13:48:01] 2026-01-21 18:47:13,590 | INFO     | job 6969263959 has state=finished
[2026-01-21 13:48:01] 2026-01-21 18:47:13,591 | INFO     | preparing for final server update for job 6969263959 in state='finished'
[2026-01-21 13:48:01] 2026-01-21 18:47:13,591 | INFO     | this job has now completed (state=finished)
[2026-01-21 13:48:01] 2026-01-21 18:47:13,591 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 13:48:01] 2026-01-21 18:47:13,592 | INFO     | log transfer has been attempted: DONE
[2026-01-21 13:48:01] 2026-01-21 18:47:13,592 | INFO     | job 6969263959 has finished - writing final server update
[2026-01-21 13:48:01] 2026-01-21 18:47:13,592 | INFO     | total number of processed events: 400 (read)
[2026-01-21 13:48:01] 2026-01-21 18:47:13,593 | INFO     | executing command: lscpu
[2026-01-21 13:48:01] 2026-01-21 18:47:13,620 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-21 13:48:01] 2026-01-21 18:47:14,083 | INFO     | time since job start (2542s) is within the limit (349056.0s)
[2026-01-21 13:48:01] 2026-01-21 18:47:14,996 | WARNING  | process 24147 can no longer be monitored (due to stat problems) - aborting
[2026-01-21 13:48:01] 2026-01-21 18:47:14,996 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969263959/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 13:48:01] 2026-01-21 18:47:15,084 | INFO     | number of running child processes to parent process 24147: 1
[2026-01-21 13:48:01] 2026-01-21 18:47:15,084 | INFO     | maximum number of monitored processes: 6
[2026-01-21 13:48:01] 2026-01-21 18:47:16,087 | INFO     | time since job start (2544s) is within the limit (349056.0s)
[2026-01-21 13:48:01] 2026-01-21 18:47:17,586 | INFO     | monitor loop #193: job 0:6969263959 is in state 'finished'
[2026-01-21 13:48:01] 2026-01-21 18:47:17,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-21 13:48:01] 2026-01-21 18:47:18,093 | INFO     | time since job start (2546s) is within the limit (349056.0s)
[2026-01-21 13:48:01] 2026-01-21 18:47:19,198 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-21 13:48:01] 2026-01-21 18:47:19,202 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2026-01-21 13:48:01] 2026-01-21 18:47:19,204 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969263959/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 13:48:01] 2026-01-21 18:47:19,205 | INFO     | extracted standard info from prmon json
[2026-01-21 13:48:01] 2026-01-21 18:47:19,205 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 13:48:01] 2026-01-21 18:47:19,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 13:48:01] 2026-01-21 18:47:19,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 13:48:01] 2026-01-21 18:47:19,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 13:48:01] 2026-01-21 18:47:19,207 | INFO     | fitting pss+swap vs Time
[2026-01-21 13:48:01] 2026-01-21 18:47:19,208 | INFO     | sum of square deviations: 13283970.0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,208 | INFO     | sum of deviations: 375078508.0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,208 | INFO     | mean x: 1769020062.0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,208 | INFO     | mean y: 3035885.4571428574
[2026-01-21 13:48:01] 2026-01-21 18:47:19,208 | INFO     | intersect: -49945993318.69097
[2026-01-21 13:48:01] 2026-01-21 18:47:19,209 | INFO     | chi2: 9.85704730772244e-05
[2026-01-21 13:48:01] 2026-01-21 18:47:19,209 | INFO     | current memory leak: 28.24 B/s (using 35 data points, chi2=0.00)
[2026-01-21 13:48:01] 2026-01-21 18:47:19,209 | INFO     | could have reported an average CPU frequency of 2019 MHz (5 samples)
[2026-01-21 13:48:01] 2026-01-21 18:47:19,209 | INFO     | ..............................
[2026-01-21 13:48:01] 2026-01-21 18:47:19,209 | INFO     | . Timing measurements:
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | . get job = 0 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | . initial setup = 2 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | . payload setup = 6 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | . stage-in = 0 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | . payload execution = 2514 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | . stage-out = 0 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | . log creation = 0 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,210 | INFO     | ..............................
[2026-01-21 13:48:01] 2026-01-21 18:47:19,283 | INFO     | 
[2026-01-21 13:48:01] 2026-01-21 18:47:19,283 | INFO     | job summary report
[2026-01-21 13:48:01] 2026-01-21 18:47:19,284 | INFO     | --------------------------------------------------
[2026-01-21 13:48:01] 2026-01-21 18:47:19,284 | INFO     | PanDA job id: 6969263959
[2026-01-21 13:48:01] 2026-01-21 18:47:19,284 | INFO     | task id: 48215263
[2026-01-21 13:48:01] 2026-01-21 18:47:19,284 | INFO     | errors: (none)
[2026-01-21 13:48:01] 2026-01-21 18:47:19,284 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 13:48:01] 2026-01-21 18:47:19,284 | INFO     | pilot state: finished 
[2026-01-21 13:48:01] 2026-01-21 18:47:19,284 | INFO     | transexitcode: 0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,285 | INFO     | exeerrorcode: 0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,285 | INFO     | exeerrordiag: 
[2026-01-21 13:48:01] 2026-01-21 18:47:19,285 | INFO     | exitcode: 0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,285 | INFO     | exitmsg: OK
[2026-01-21 13:48:01] 2026-01-21 18:47:19,285 | INFO     | cpuconsumptiontime: 27061 s
[2026-01-21 13:48:01] 2026-01-21 18:47:19,285 | INFO     | nevents: 400
[2026-01-21 13:48:01] 2026-01-21 18:47:19,286 | INFO     | neventsw: 0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,286 | INFO     | pid: 24147
[2026-01-21 13:48:01] 2026-01-21 18:47:19,286 | INFO     | pgrp: 24147
[2026-01-21 13:48:01] 2026-01-21 18:47:19,286 | INFO     | corecount: 12
[2026-01-21 13:48:01] 2026-01-21 18:47:19,286 | INFO     | event service: False
[2026-01-21 13:48:01] 2026-01-21 18:47:19,287 | INFO     | sizes: {0: 2283945, 5: 2284207, 11: 2284263, 2524: 2309354, 2525: 2318408, 2531: 2318578}
[2026-01-21 13:48:01] 2026-01-21 18:47:19,287 | INFO     | --------------------------------------------------
[2026-01-21 13:48:01] 2026-01-21 18:47:19,287 | INFO     | 
[2026-01-21 13:48:01] 2026-01-21 18:47:19,287 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-21 13:48:01] 2026-01-21 18:47:19,311 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,311 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,311 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,312 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,314 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 13:48:01] 2026-01-21 18:47:19,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,314 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 13:48:01] 2026-01-21 18:47:19,314 | INFO     | job 6969263959 has completed (purged errors)
[2026-01-21 13:48:01] 2026-01-21 18:47:19,314 | INFO     | overall cleanup function is called
[2026-01-21 13:48:01] 2026-01-21 18:47:20,322 | INFO     | --- collectZombieJob: --- 10, [24147]
[2026-01-21 13:48:01] 2026-01-21 18:47:20,323 | INFO     | zombie collector waiting for pid 24147
[2026-01-21 13:48:01] 2026-01-21 18:47:20,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 13:48:01] 2026-01-21 18:47:20,323 | INFO     | collected zombie processes
[2026-01-21 13:48:01] 2026-01-21 18:47:20,323 | INFO     | will attempt to kill all subprocesses of pid=24147
[2026-01-21 13:48:01] 2026-01-21 18:47:20,410 | INFO     | process IDs to be killed: [24147] (in reverse order)
[2026-01-21 13:48:01] 2026-01-21 18:47:20,458 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 13:48:01] 2026-01-21 18:47:20,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 13:48:01] 2026-01-21 18:47:20,462 | INFO     | did not find any defunct processes belonging to 24147
[2026-01-21 13:48:01] 2026-01-21 18:47:20,465 | INFO     | did not find any defunct processes belonging to 24147
[2026-01-21 13:48:01] 2026-01-21 18:47:20,466 | INFO     | ready for new job
[2026-01-21 13:48:01] 2026-01-21 18:47:20,466 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 13:48:01] 2026-01-21 18:47:20,467 | INFO     | ***************************************
[2026-01-21 13:48:01] 2026-01-21 18:47:20,467 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-21 13:48:01] 2026-01-21 18:47:20,468 | INFO     | ***************************************
[2026-01-21 13:48:01] 2026-01-21 18:47:20,468 | INFO     | 
[2026-01-21 13:48:01] 2026-01-21 18:47:20,469 | INFO     | architecture information:
[2026-01-21 13:48:01] 2026-01-21 18:47:20,469 | INFO     | executing command: cat /etc/os-release
[2026-01-21 13:48:01] 2026-01-21 18:47:20,484 | INFO     | cat /etc/os-release:
[2026-01-21 13:48:01] NAME="CentOS Linux"
[2026-01-21 13:48:01] VERSION="7 (Core)"
[2026-01-21 13:48:01] ID="centos"
[2026-01-21 13:48:01] ID_LIKE="rhel fedora"
[2026-01-21 13:48:01] VERSION_ID="7"
[2026-01-21 13:48:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 13:48:01] ANSI_COLOR="0;31"
[2026-01-21 13:48:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 13:48:01] HOME_URL="https://www.centos.org/"
[2026-01-21 13:48:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 13:48:01] 
[2026-01-21 13:48:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 13:48:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 13:48:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 13:48:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 13:48:01] 
[2026-01-21 13:48:01] 2026-01-21 18:47:20,485 | INFO     | ***************************************
[2026-01-21 13:48:01] 2026-01-21 18:47:20,988 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-21 13:48:01] 2026-01-21 18:47:21,004 | INFO     | sufficient remaining disk space (17854103552 B)
[2026-01-21 13:48:01] 2026-01-21 18:47:21,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 13:48:01] 2026-01-21 18:47:21,004 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 13:48:01] 2026-01-21 18:47:21,005 | INFO     | update_server=False
[2026-01-21 13:48:01] 2026-01-21 18:47:21,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 13:48:01] 2026-01-21 18:47:21,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 13:48:01] 2026-01-21 18:47:21,008 | INFO     | all payload control threads have been joined
[2026-01-21 13:48:01] 2026-01-21 18:47:21,094 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 13:48:01] 2026-01-21 18:47:21,095 | INFO     | aborting loop
[2026-01-21 13:48:01] 2026-01-21 18:47:21,389 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 13:48:01] 2026-01-21 18:47:21,518 | INFO     | all data control threads have been joined
[2026-01-21 13:48:01] 2026-01-21 18:47:22,009 | INFO     | [payload] control thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,010 | INFO     | [job] retrieve thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,011 | INFO     | [job] queue monitor thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,031 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,100 | INFO     | [job] job monitor thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,123 | INFO     | all job control threads have been joined
[2026-01-21 13:48:01] 2026-01-21 18:47:22,469 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,480 | INFO     | [data] copytool_in thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,523 | INFO     | [data] control thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:22,636 | INFO     | [payload] failed_post thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:23,086 | INFO     | [job] validate thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:23,129 | INFO     | [job] control thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:23,202 | INFO     | [payload] validate_post thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:23,296 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:23,395 | INFO     | [data] copytool_out thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:23,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 13:48:01] 2026-01-21 18:47:27,998 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:31,269 | INFO     | job.realtimelogging is not enabled
[2026-01-21 13:48:01] 2026-01-21 18:47:32,274 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 13:48:01] 2026-01-21 18:47:51,288 | INFO     | PID=16424 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-21 13:48:01] 2026-01-21 18:47:51,289 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 13:48:01] 2026-01-21 18:47:51,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 13:48:01] 2026-01-21 18:47:51,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 13:48:01] 2026-01-21 18:47:55,832 | INFO     | [monitor] cgroup control has ended
[2026-01-21 13:48:01] 2026-01-21 18:47:56,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987610146624)>', '<ExcThread(monitor, started 139987295115008)>']
[2026-01-21 13:48:01] 2026-01-21 18:47:57,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 13:48:01] 2026-01-21 18:47:57,306 | INFO     | [monitor] control thread has ended
[2026-01-21 13:48:01] 2026-01-21 18:48:01,642 | INFO     | all workflow threads have been joined
[2026-01-21 13:48:01] 2026-01-21 18:48:01,642 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 13:48:01] 2026-01-21 18:48:01,650 | INFO     | traces error code: 0
[2026-01-21 13:48:01] 2026-01-21 18:48:01,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 13:48:01] 2026-01-21 18:48:01,733 [wrapper] ==== pilot stdout END ====
[2026-01-21 13:48:01] 2026-01-21 18:48:01,736 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 13:48:01] 2026-01-21 18:48:01,740 [wrapper] pilotpid: 16424
[2026-01-21 13:48:01] 2026-01-21 18:48:01,743 [wrapper] Pilot exit status: 0
[2026-01-21 13:48:01] 2026-01-21 18:48:01,759 [wrapper] pandaids: 6969263959
[2026-01-21 13:48:01] 2026-01-21 18:48:01,797 [wrapper] cleanup supervisor_pilot  6414 16425
[2026-01-21 13:48:01] 2026-01-21 18:48:01,801 [wrapper] Test setup, not cleaning
[2026-01-21 13:48:01] 2026-01-21 18:48:01,804 [wrapper] apfmon messages muted
[2026-01-21 13:48:01] 2026-01-21 18:48:01,808 [wrapper] ==== wrapper stdout END ====
[2026-01-21 13:48:01] 2026-01-21 18:48:01,812 [wrapper] ==== wrapper stderr END ====
[2026-01-21 13:48:01]  *** Error codes and diagnostics ***
[2026-01-21 13:48:01]     "exeErrorCode": 0,
[2026-01-21 13:48:01]     "exeErrorDiag": "",
[2026-01-21 13:48:01]     "pilotErrorCode": 0,
[2026-01-21 13:48:01]     "pilotErrorDiag": "",
[2026-01-21 13:48:01]  *** Listing of results directory ***
[2026-01-21 13:48:01] total 738112
[2026-01-21 13:48:01] -rwx------ 1 boincer umatlas     36322 Jan 13 17:01 runpilot2-wrapper.sh
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 17:12 pilot3.tar.gz
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 17:20 queuedata.json
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas       100 Jan 21 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 13:48:01] -rwxr-xr-x 1 boincer umatlas      7986 Jan 21 13:04 run_atlas
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas       105 Jan 21 13:04 job.xml
[2026-01-21 13:48:01] -rw-r--r-- 2 boincer umatlas 597263426 Jan 21 13:04 EVNT.32794306._000162.pool.root.1
[2026-01-21 13:48:01] -rw-r--r-- 2 boincer umatlas     15847 Jan 21 13:04 start_atlas.sh
[2026-01-21 13:48:01] drwxrwx--x 2 boincer umatlas      4096 Jan 21 13:04 shared
[2026-01-21 13:48:01] -rw-r--r-- 2 boincer umatlas    592392 Jan 21 13:04 input.tar.gz
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas         0 Jan 21 13:04 boinc_lockfile
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas      2505 Jan 21 13:04 pandaJob.out
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas        57 Jan 21 13:04 setup.sh.local
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas   1002771 Jan 21 13:04 agis_schedconf.cvmfs.json
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas   1516246 Jan 21 13:04 agis_ddmendpoints.agis.ALL.json
[2026-01-21 13:48:01] drwx------ 5 boincer umatlas      4096 Jan 21 13:04 pilot3
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas 153134747 Jan 21 13:46 HITS.48215263._004040.pool.root.1
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas      1039 Jan 21 13:47 memory_monitor_summary.json
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas       530 Jan 21 13:47 boinc_task_state.xml
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas    359678 Jan 21 13:47 log.48215263._004040.job.log.tgz.1
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas      7843 Jan 21 13:47 heartbeat.json
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas      5954 Jan 21 13:47 init_data.xml
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas      8192 Jan 21 13:47 boinc_mmap_file
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas        27 Jan 21 13:47 wrapper_checkpoint.txt
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas        95 Jan 21 13:47 pilot_heartbeat.json
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas      4818 Jan 21 13:48 pilotlog.txt
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas    392978 Jan 21 13:48 log.48215263._004040.job.log.1
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas       357 Jan 21 13:48 output.list
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas       620 Jan 21 13:48 runtime_log
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas    768000 Jan 21 13:48 result.tar.gz
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas       655 Jan 21 13:48 Wb4KDmCd1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmc6oKDmWKQc0m.diag
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas      9344 Jan 21 13:48 runtime_log.err
[2026-01-21 13:48:01] -rw-r--r-- 1 boincer umatlas     21720 Jan 21 13:48 stderr.txt
[2026-01-21 13:48:01] HITS file was successfully produced:
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas 153134747 Jan 21 13:46 shared/HITS.pool.root.1
[2026-01-21 13:48:01]  *** Contents of shared directory: ***
[2026-01-21 13:48:01] total 734168
[2026-01-21 13:48:01] -rw-r--r-- 2 boincer umatlas 597263426 Jan 21 13:04 ATLAS.root_0
[2026-01-21 13:48:01] -rw-r--r-- 2 boincer umatlas     15847 Jan 21 13:04 start_atlas.sh
[2026-01-21 13:48:01] -rw-r--r-- 2 boincer umatlas    592392 Jan 21 13:04 input.tar.gz
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas 153134747 Jan 21 13:46 HITS.pool.root.1
[2026-01-21 13:48:01] -rw------- 1 boincer umatlas    768000 Jan 21 13:48 result.tar.gz
13:48:03 (12419): run_atlas exited; CPU time 27040.155220
13:48:03 (12419): called boinc_finish(0)

</stderr_txt>
]]>

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