Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:05:07 (356903): wrapper (7.7.26015): starting
05:05:07 (356903): wrapper: running run_atlas (--nthreads 3)
[2026-01-22 05:05:07] Arguments: --nthreads 3
[2026-01-22 05:05:07] Threads: 3
[2026-01-22 05:05:07] Checking for CVMFS
[2026-01-22 05:05:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-22 05:05:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-22 05:05:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-22 05:05:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-22 05:05:08] 2.9.2.0 41747 1009 54528 155392 1 188 12772856 36864001 0 130560 0 423059 99.995 10068 5701 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-22 05:05:08] CVMFS is ok
[2026-01-22 05:05:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-22 05:05:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-22 05:05:08] Further information can be found at the LHC@home message board.
[2026-01-22 05:05:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-22 05:05:08] Checking for apptainer binary...
[2026-01-22 05:05:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-22 05:05:08] Running /usr/bin/apptainer --version
[2026-01-22 05:05:08] apptainer version 1.4.1-1.1
[2026-01-22 05:05:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-22 05:05:08] atlasA221b
[2026-01-22 05:05:08] apptainer works
[2026-01-22 05:05:08] Set ATHENA_PROC_NUMBER=3
[2026-01-22 05:05:08] Set ATHENA_CORE_NUMBER=3
[2026-01-22 05:05:08] Starting ATLAS job with PandaID=6977221085
[2026-01-22 05:05:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-22 06:45:37]  *** The last 200 lines of the pilot log: ***
[2026-01-22 06:45:37] 2026-01-22 05:44:37,683 | INFO     | process IDs to be killed: [365434] (in reverse order)
[2026-01-22 06:45:37] 2026-01-22 05:44:37,712 | WARNING  | found no corresponding commands to process id(s)
[2026-01-22 06:45:37] 2026-01-22 05:44:37,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-22 06:45:37] 2026-01-22 05:44:37,719 | INFO     | did not find any defunct processes belonging to 365434
[2026-01-22 06:45:37] 2026-01-22 05:44:37,725 | INFO     | did not find any defunct processes belonging to 365434
[2026-01-22 06:45:37] 2026-01-22 05:44:37,725 | INFO     | ready for new job
[2026-01-22 06:45:37] 2026-01-22 05:44:37,725 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-22 06:45:37] 2026-01-22 05:44:37,726 | INFO     | **************************************
[2026-01-22 06:45:37] 2026-01-22 05:44:37,726 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-22 06:45:37] 2026-01-22 05:44:37,726 | INFO     | **************************************
[2026-01-22 06:45:37] 2026-01-22 05:44:37,726 | INFO     | 
[2026-01-22 06:45:37] 2026-01-22 05:44:37,727 | INFO     | architecture information:
[2026-01-22 06:45:37] 2026-01-22 05:44:37,727 | INFO     | executing command: cat /etc/os-release
[2026-01-22 06:45:37] 2026-01-22 05:44:37,736 | INFO     | cat /etc/os-release:
[2026-01-22 06:45:37] NAME="CentOS Linux"
[2026-01-22 06:45:37] VERSION="7 (Core)"
[2026-01-22 06:45:37] ID="centos"
[2026-01-22 06:45:37] ID_LIKE="rhel fedora"
[2026-01-22 06:45:37] VERSION_ID="7"
[2026-01-22 06:45:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-22 06:45:37] ANSI_COLOR="0;31"
[2026-01-22 06:45:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-22 06:45:37] HOME_URL="https://www.centos.org/"
[2026-01-22 06:45:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-22 06:45:37] 
[2026-01-22 06:45:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-22 06:45:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-22 06:45:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-22 06:45:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-22 06:45:37] 
[2026-01-22 06:45:37] 2026-01-22 05:44:37,737 | INFO     | **************************************
[2026-01-22 06:45:37] 2026-01-22 05:44:37,749 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-22 06:45:37] 2026-01-22 05:44:37,805 | INFO     | number of running child processes to parent process 365434: 1
[2026-01-22 06:45:37] 2026-01-22 05:44:37,805 | INFO     | maximum number of monitored processes: 6
[2026-01-22 06:45:37] 2026-01-22 05:44:37,805 | INFO     | aborting job monitoring since job object (job id=6977221085) has expired
[2026-01-22 06:45:37] 2026-01-22 05:44:38,239 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-22 06:45:37] 2026-01-22 05:44:38,252 | INFO     | sufficient remaining disk space (346943389696 B)
[2026-01-22 06:45:37] 2026-01-22 05:44:38,252 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-22 06:45:37] 2026-01-22 05:44:38,252 | INFO     | current server update state: UPDATING_FINAL
[2026-01-22 06:45:37] 2026-01-22 05:44:38,252 | INFO     | update_server=False
[2026-01-22 06:45:37] 2026-01-22 05:44:38,252 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-22 06:45:37] 2026-01-22 05:44:38,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-22 06:45:37] 2026-01-22 05:44:38,253 | INFO     | will abort loop
[2026-01-22 06:45:37] 2026-01-22 05:44:38,253 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-22 06:45:37] 2026-01-22 05:44:38,253 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-22 06:45:37] 2026-01-22 05:44:38,253 | INFO     | found 0 job(s) in 20 queues
[2026-01-22 06:45:37] 2026-01-22 05:44:38,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-22 06:45:37] 2026-01-22 05:44:38,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-22 06:45:37] 2026-01-22 05:44:38,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-22 06:45:37] 2026-01-22 05:44:38,589 | INFO     | all data control threads have been joined
[2026-01-22 06:45:37] 2026-01-22 05:44:38,608 | INFO     | all payload control threads have been joined
[2026-01-22 06:45:37] 2026-01-22 05:44:39,119 | INFO     | all job control threads have been joined
[2026-01-22 06:45:37] 2026-01-22 05:44:39,256 | INFO     | [job] queue monitor thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,257 | INFO     | [job] retrieve thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,257 | INFO     | [job] job monitor thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,262 | INFO     | [payload] execute_payloads thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-22 06:45:37] 2026-01-22 05:44:39,513 | INFO     | [job] validate thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,573 | INFO     | [payload] validate_post thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,594 | INFO     | [data] control thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,613 | INFO     | [payload] control thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,621 | INFO     | [job] create_data_payload thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,662 | INFO     | [payload] validate_pre thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:39,802 | INFO     | [data] copytool_in thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:40,124 | INFO     | [job] control thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:40,683 | INFO     | [payload] failed_post thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:41,352 | INFO     | [data] copytool_out thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:42,258 | INFO     | [data] queue_monitor thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:44:44,514 | INFO     | job.realtimelogging is not enabled
[2026-01-22 06:45:37] 2026-01-22 05:44:45,515 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-22 06:45:37] 2026-01-22 05:45:30,855 | INFO     | [monitor] cgroup control has ended
[2026-01-22 06:45:37] 2026-01-22 05:45:31,841 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140658298767168)>', '<ExcThread(monitor, started 140657217758976)>']
[2026-01-22 06:45:37] 2026-01-22 05:45:32,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-22 06:45:37] 2026-01-22 05:45:32,516 | INFO     | [monitor] control thread has ended
[2026-01-22 06:45:37] 2026-01-22 05:45:36,861 | INFO     | all workflow threads have been joined
[2026-01-22 06:45:37] 2026-01-22 05:45:36,861 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-22 06:45:37] 2026-01-22 05:45:36,862 | INFO     | traces error code: 0
[2026-01-22 06:45:37] 2026-01-22 05:45:36,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-22 06:45:37] 2026-01-22 05:45:36,942 [wrapper] ==== pilot stdout END ====
[2026-01-22 06:45:37] 2026-01-22 05:45:36,946 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-22 06:45:37] 2026-01-22 05:45:36,949 [wrapper] pilotpid: 360961
[2026-01-22 06:45:37] 2026-01-22 05:45:36,952 [wrapper] Pilot exit status: 0
[2026-01-22 06:45:37] 2026-01-22 05:45:36,960 [wrapper] pandaids: 6977221085
[2026-01-22 06:45:37] 2026-01-22 05:45:36,982 [wrapper] cleanup supervisor_pilot  383874 360962
[2026-01-22 06:45:37] 2026-01-22 05:45:36,985 [wrapper] Test setup, not cleaning
[2026-01-22 06:45:37] 2026-01-22 05:45:36,987 [wrapper] apfmon messages muted
[2026-01-22 06:45:37] 2026-01-22 05:45:36,990 [wrapper] ==== wrapper stdout END ====
[2026-01-22 06:45:37] 2026-01-22 05:45:36,993 [wrapper] ==== wrapper stderr END ====
[2026-01-22 06:45:37]  *** Error codes and diagnostics ***
[2026-01-22 06:45:37]     "exeErrorCode": 0,
[2026-01-22 06:45:37]     "exeErrorDiag": "",
[2026-01-22 06:45:37]     "pilotErrorCode": 0,
[2026-01-22 06:45:37]     "pilotErrorDiag": "",
[2026-01-22 06:45:37]  *** Listing of results directory ***
[2026-01-22 06:45:37] total 422080
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc    584422 Jan 21 04:29 pilot3.tar.gz
[2026-01-22 06:45:37] -rwx------ 1 boinc boinc     36322 Jan 21 04:31 runpilot2-wrapper.sh
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc      5111 Jan 21 04:34 queuedata.json
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc       100 Jan 22 05:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-22 06:45:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 22 05:05 run_atlas
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc       105 Jan 22 05:05 job.xml
[2026-01-22 06:45:37] -rw-r--r-- 2 boinc boinc 256333028 Jan 22 05:05 EVNT.48299571._000006.pool.root.1
[2026-01-22 06:45:37] drwxrwx--x 2 boinc boinc      4096 Jan 22 05:05 shared
[2026-01-22 06:45:37] -rw-r--r-- 2 boinc boinc    597765 Jan 22 05:05 input.tar.gz
[2026-01-22 06:45:37] -rw-r--r-- 2 boinc boinc     15845 Jan 22 05:05 start_atlas.sh
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc         0 Jan 22 05:05 boinc_setup_complete
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc      6199 Jan 22 05:05 init_data.xml
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc         0 Jan 22 05:05 boinc_lockfile
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc      2622 Jan 22 05:05 pandaJob.out
[2026-01-22 06:45:37] -rw------- 1 boinc boinc   1002771 Jan 22 05:05 agis_schedconf.cvmfs.json
[2026-01-22 06:45:37] -rw------- 1 boinc boinc   1516246 Jan 22 05:05 agis_ddmendpoints.agis.ALL.json
[2026-01-22 06:45:37] -rw------- 1 boinc boinc       430 Jan 22 05:05 workernode_map.json
[2026-01-22 06:45:37] drwx------ 5 boinc boinc      4096 Jan 22 05:05 pilot3
[2026-01-22 06:45:37] -rw------- 1 boinc boinc        95 Jan 22 06:43 pilot_heartbeat.json
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc       529 Jan 22 06:44 boinc_task_state.xml
[2026-01-22 06:45:37] -rw------- 1 boinc boinc 169676045 Jan 22 06:44 HITS.48299573._000141.pool.root.1
[2026-01-22 06:45:37] -rw------- 1 boinc boinc      1030 Jan 22 06:44 memory_monitor_summary.json
[2026-01-22 06:45:37] -rw------- 1 boinc boinc    274671 Jan 22 06:44 log.48299573._000141.job.log.tgz.1
[2026-01-22 06:45:37] -rw------- 1 boinc boinc      6318 Jan 22 06:44 heartbeat.json
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc      8192 Jan 22 06:45 boinc_mmap_file
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc        27 Jan 22 06:45 wrapper_checkpoint.txt
[2026-01-22 06:45:37] -rw------- 1 boinc boinc      5033 Jan 22 06:45 pilotlog.txt
[2026-01-22 06:45:37] -rw------- 1 boinc boinc    860154 Jan 22 06:45 log.48299573._000141.job.log.1
[2026-01-22 06:45:37] -rw------- 1 boinc boinc       357 Jan 22 06:45 output.list
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc       620 Jan 22 06:45 runtime_log
[2026-01-22 06:45:37] -rw------- 1 boinc boinc   1157120 Jan 22 06:45 result.tar.gz
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc      8916 Jan 22 06:45 runtime_log.err
[2026-01-22 06:45:37] -rw------- 1 boinc boinc       661 Jan 22 06:45 K6NODmG7d28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeOrKDm58m3bm.diag
[2026-01-22 06:45:37] -rw-r--r-- 1 boinc boinc     10587 Jan 22 06:45 stderr.txt
[2026-01-22 06:45:37] HITS file was successfully produced:
[2026-01-22 06:45:37] -rw------- 1 boinc boinc 169676045 Jan 22 06:44 shared/HITS.pool.root.1
[2026-01-22 06:45:37]  *** Contents of shared directory: ***
[2026-01-22 06:45:37] total 417768
[2026-01-22 06:45:37] -rw-r--r-- 2 boinc boinc 256333028 Jan 22 05:05 ATLAS.root_0
[2026-01-22 06:45:37] -rw-r--r-- 2 boinc boinc    597765 Jan 22 05:05 input.tar.gz
[2026-01-22 06:45:37] -rw-r--r-- 2 boinc boinc     15845 Jan 22 05:05 start_atlas.sh
[2026-01-22 06:45:37] -rw------- 1 boinc boinc 169676045 Jan 22 06:44 HITS.pool.root.1
[2026-01-22 06:45:37] -rw------- 1 boinc boinc   1157120 Jan 22 06:45 result.tar.gz
06:45:59 (356903): run_atlas exited; CPU time 17203.584171
06:45:59 (356903): called boinc_finish(0)

</stderr_txt>
]]>

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