Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:04:24 (26592): wrapper (7.7.26015): starting
18:04:24 (26592): wrapper: running run_atlas (--nthreads 8)
[2026-01-21 18:04:24] Arguments: --nthreads 8
[2026-01-21 18:04:24] Threads: 8
[2026-01-21 18:04:24] Checking for CVMFS
[2026-01-21 18:04:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 18:04:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 18:04:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 18:04:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 18:04:33] 2.11.0.0 4333 146205 109904 155392 1 98 3541569 4090646 363 130560 3 10686721 99.630 9471935 514 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-21 18:04:33] CVMFS is ok
[2026-01-21 18:04:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 18:04:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 18:04:33] Further information can be found at the LHC@home message board.
[2026-01-21 18:04:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 18:04:33] Checking for apptainer binary...
[2026-01-21 18:04:33] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-21 18:04:33] apptainer is not installed, using version from CVMFS
[2026-01-21 18:04:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 18:04:34] WARNING: Environment variable TMPDIR already has value [/tmp/job_11035116/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node035
[2026-01-21 18:04:34] apptainer works
[2026-01-21 18:04:34] Set ATHENA_PROC_NUMBER=8
[2026-01-21 18:04:34] Set ATHENA_CORE_NUMBER=8
[2026-01-21 18:04:34] Starting ATLAS job with PandaID=6976952751
[2026-01-21 18:04:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11035116/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 18:55:14]  *** The last 200 lines of the pilot log: ***
[2026-01-21 18:55:14]  is_altstaged=None
[2026-01-21 18:55:14]  is_tar=False
[2026-01-21 18:55:14]  lfn=log.48298381._000424.job.log.tgz.1
[2026-01-21 18:55:14]  mtime=0
[2026-01-21 18:55:14]  protocol_id=None
[2026-01-21 18:55:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-21 18:55:14]  replicas=None
[2026-01-21 18:55:14]  scope=mc23_13p6TeV
[2026-01-21 18:55:14]  status=None
[2026-01-21 18:55:14]  status_code=0
[2026-01-21 18:55:14]  storage_token=
[2026-01-21 18:55:14]  surl=/tmp/job_11035116/atlas/pilot/slots/0/PanDA_Pilot-6976952751/log.48298381._000424.job.log.tgz.1
[2026-01-21 18:55:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/33/log.48298381._000424.job.log.tgz.1
[2026-01-21 18:55:14]  workdir=None
[2026-01-21 18:55:14] ]
[2026-01-21 18:55:14] 2026-01-21 17:54:22,735 | INFO     | transferring file log.48298381._000424.job.log.tgz.1 from /tmp/job_11035116/atlas/pilot/slots/0/PanDA_Pilot-6976952751/log.48298381._000424.job.log.tgz.1 to /tmp/j
[2026-01-21 18:55:14] 2026-01-21 17:54:22,735 | INFO     | executing command: /usr/bin/env mv /tmp/job_11035116/atlas/pilot/slots/0/PanDA_Pilot-6976952751/log.48298381._000424.job.log.tgz.1 /tmp/job_11035116/atlas/pilot/sl
[2026-01-21 18:55:14] 2026-01-21 17:54:22,743 | INFO     | adding to output.list: log.48298381._000424.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d4/33/log.48298381._000424.job.log.tg
[2026-01-21 18:55:14] 2026-01-21 17:54:22,744 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 18:55:14] 2026-01-21 17:54:22,744 | INFO     | summary of transferred files:
[2026-01-21 18:55:14] 2026-01-21 17:54:22,744 | INFO     |  -- lfn=log.48298381._000424.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 18:55:14] 2026-01-21 17:54:22,744 | INFO     | stage-out finished correctly
[2026-01-21 18:55:14] 2026-01-21 17:54:23,311 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 18:55:14] 2026-01-21 17:54:23,683 | INFO     | time since job start (2959s) is within the limit (349056.0s)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,407 | INFO     | job 6976952751 has state=finished
[2026-01-21 18:55:14] 2026-01-21 17:54:25,407 | INFO     | preparing for final server update for job 6976952751 in state='finished'
[2026-01-21 18:55:14] 2026-01-21 17:54:25,688 | INFO     | time since job start (2961s) is within the limit (349056.0s)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,969 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,969 | INFO     | reading metadata from: /tmp/job_11035116/atlas/pilot/slots/0/PanDA_Pilot-6976952751/jobReport.json
[2026-01-21 18:55:14] 2026-01-21 17:54:25,970 | INFO     | added worker_node to metadata from /tmp/job_11035116/atlas/pilot/slots/0/workernode_map.json
[2026-01-21 18:55:14] 2026-01-21 17:54:25,971 | INFO     | this job has now completed (state=finished)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,971 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,971 | INFO     | log transfer has been attempted: DONE
[2026-01-21 18:55:14] 2026-01-21 17:54:25,971 | INFO     | job 6976952751 has finished - writing final server update
[2026-01-21 18:55:14] 2026-01-21 17:54:25,971 | INFO     | total number of processed events: 400 (read)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,988 | INFO     | using path: /tmp/job_11035116/atlas/pilot/slots/0/PanDA_Pilot-6976952751/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,989 | INFO     | extracted standard info from prmon json
[2026-01-21 18:55:14] 2026-01-21 17:54:25,989 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 18:55:14] 2026-01-21 17:54:25,989 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 18:55:14] 2026-01-21 17:54:25,989 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 18:55:14] 2026-01-21 17:54:25,989 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 18:55:14] 2026-01-21 17:54:25,989 | INFO     | fitting pss+swap vs Time
[2026-01-21 18:55:14] 2026-01-21 17:54:25,989 | INFO     | sum of square deviations: 22960430.5
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | sum of deviations: 7422859755.500001
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | mean x: 1769016675.5
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | mean y: 2462071.4523809524
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | intersect: -571901565920.4163
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | chi2: 1.9801534505090315
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | current memory leak: 323.29 B/s (using 42 data points, chi2=1.98)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | could have reported an average CPU frequency of 2489 MHz (5 samples)
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | ..............................
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . Timing measurements:
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . get job = 0 s
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . initial setup = 2 s
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . payload setup = 2 s
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . stage-in = 0 s
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . payload execution = 2941 s
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . stage-out = 0 s
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | . log creation = 0 s
[2026-01-21 18:55:14] 2026-01-21 17:54:25,990 | INFO     | ..............................
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | 
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | job summary report
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | --------------------------------------------------
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | PanDA job id: 6976952751
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | task id: 48298381
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | errors: (none)
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | pilot state: finished 
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | transexitcode: 0
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | exeerrorcode: 0
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | exeerrordiag: 
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | exitcode: 0
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | exitmsg: OK
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | cpuconsumptiontime: 18501 s
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | nevents: 400
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | neventsw: 0
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | pid: 21964
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | pgrp: 21964
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | corecount: 8
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | event service: False
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | sizes: {0: 2284515, 11: 2284515, 2946: 2309874, 2947: 2318958, 2950: 2319128}
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | --------------------------------------------------
[2026-01-21 18:55:14] 2026-01-21 17:54:26,220 | INFO     | 
[2026-01-21 18:55:14] 2026-01-21 17:54:26,221 | INFO     | executing command: ls -lF /tmp/job_11035116/atlas/pilot/slots/0
[2026-01-21 18:55:14] 2026-01-21 17:54:26,229 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | job 6976952751 has completed (purged errors)
[2026-01-21 18:55:14] 2026-01-21 17:54:26,230 | INFO     | overall cleanup function is called
[2026-01-21 18:55:14] 2026-01-21 17:54:27,236 | INFO     | --- collectZombieJob: --- 10, [21964]
[2026-01-21 18:55:14] 2026-01-21 17:54:27,236 | INFO     | zombie collector waiting for pid 21964
[2026-01-21 18:55:14] 2026-01-21 17:54:27,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 18:55:14] 2026-01-21 17:54:27,237 | INFO     | collected zombie processes
[2026-01-21 18:55:14] 2026-01-21 17:54:27,237 | INFO     | will attempt to kill all subprocesses of pid=21964
[2026-01-21 18:55:14] 2026-01-21 17:54:27,339 | INFO     | process IDs to be killed: [21964] (in reverse order)
[2026-01-21 18:55:14] 2026-01-21 17:54:27,377 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 18:55:14] 2026-01-21 17:54:27,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 18:55:14] 2026-01-21 17:54:27,380 | INFO     | did not find any defunct processes belonging to 21964
[2026-01-21 18:55:14] 2026-01-21 17:54:27,384 | INFO     | did not find any defunct processes belonging to 21964
[2026-01-21 18:55:14] 2026-01-21 17:54:27,384 | INFO     | ready for new job
[2026-01-21 18:55:14] 2026-01-21 17:54:27,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 18:55:14] 2026-01-21 17:54:27,384 | INFO     | **************************************
[2026-01-21 18:55:14] 2026-01-21 17:54:27,384 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 18:55:14] 2026-01-21 17:54:27,384 | INFO     | **************************************
[2026-01-21 18:55:14] 2026-01-21 17:54:27,384 | INFO     | 
[2026-01-21 18:55:14] 2026-01-21 17:54:27,399 | INFO     | architecture information:
[2026-01-21 18:55:14] 2026-01-21 17:54:27,399 | INFO     | executing command: cat /etc/os-release
[2026-01-21 18:55:14] 2026-01-21 17:54:27,405 | INFO     | cat /etc/os-release:
[2026-01-21 18:55:14] NAME="CentOS Linux"
[2026-01-21 18:55:14] VERSION="7 (Core)"
[2026-01-21 18:55:14] ID="centos"
[2026-01-21 18:55:14] ID_LIKE="rhel fedora"
[2026-01-21 18:55:14] VERSION_ID="7"
[2026-01-21 18:55:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 18:55:14] ANSI_COLOR="0;31"
[2026-01-21 18:55:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 18:55:14] HOME_URL="https://www.centos.org/"
[2026-01-21 18:55:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 18:55:14] 
[2026-01-21 18:55:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 18:55:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 18:55:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 18:55:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 18:55:14] 
[2026-01-21 18:55:14] 2026-01-21 17:54:27,405 | INFO     | **************************************
[2026-01-21 18:55:14] 2026-01-21 17:54:27,907 | INFO     | executing command: df -mP /tmp/job_11035116/atlas/pilot/slots/0
[2026-01-21 18:55:14] 2026-01-21 17:54:27,913 | INFO     | sufficient remaining disk space (223074058240 B)
[2026-01-21 18:55:14] 2026-01-21 17:54:27,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 18:55:14] 2026-01-21 17:54:27,913 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 18:55:14] 2026-01-21 17:54:27,913 | INFO     | update_server=False
[2026-01-21 18:55:14] 2026-01-21 17:54:27,913 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 18:55:14] 2026-01-21 17:54:27,913 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 18:55:14] 2026-01-21 17:54:28,006 | INFO     | all data control threads have been joined
[2026-01-21 18:55:14] 2026-01-21 17:54:28,303 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 18:55:14] 2026-01-21 17:54:28,542 | WARNING  | process 21964 can no longer be monitored (due to stat problems) - aborting
[2026-01-21 18:55:14] 2026-01-21 17:54:28,620 | INFO     | using path: /tmp/job_11035116/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 18:55:14] 2026-01-21 17:54:28,638 | INFO     | all job control threads have been joined
[2026-01-21 18:55:14] 2026-01-21 17:54:28,716 | INFO     | number of running child processes to parent process 21964: 1
[2026-01-21 18:55:14] 2026-01-21 17:54:28,716 | INFO     | maximum number of monitored processes: 6
[2026-01-21 18:55:14] 2026-01-21 17:54:28,716 | INFO     | aborting job monitoring since job object (job id=6976952751) has expired
[2026-01-21 18:55:14] 2026-01-21 17:54:28,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 18:55:14] 2026-01-21 17:54:28,717 | INFO     | will abort loop
[2026-01-21 18:55:14] 2026-01-21 17:54:28,785 | INFO     | all payload control threads have been joined
[2026-01-21 18:55:14] 2026-01-21 17:54:28,919 | INFO     | [job] retrieve thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:28,919 | INFO     | [job] queue monitor thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:28,977 | INFO     | [data] copytool_in thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,011 | INFO     | [data] control thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,355 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 18:55:14] 2026-01-21 17:54:29,375 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,643 | INFO     | [job] control thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,722 | INFO     | [job] job monitor thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,790 | INFO     | [payload] control thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,802 | INFO     | [payload] validate_post thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:29,926 | INFO     | [payload] failed_post thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:30,052 | INFO     | [job] validate thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:30,243 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:30,308 | INFO     | [data] copytool_out thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:30,391 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:33,367 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 18:55:14] 2026-01-21 17:54:58,880 | INFO     | PID=9724 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-21 18:55:14] 2026-01-21 17:54:58,880 | INFO     | .. there are 4 such processes running
[2026-01-21 18:55:14] 2026-01-21 17:54:58,881 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 18:55:14] 2026-01-21 17:54:58,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 18:55:14] 2026-01-21 17:54:58,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 18:55:14] 2026-01-21 17:55:08,683 | INFO     | [monitor] cgroup control has ended
[2026-01-21 18:55:14] 2026-01-21 17:55:09,688 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061081344)>']
[2026-01-21 18:55:14] 2026-01-21 17:55:09,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 18:55:14] 2026-01-21 17:55:09,936 | INFO     | [monitor] control thread has ended
[2026-01-21 18:55:14] 2026-01-21 17:55:14,714 | INFO     | all workflow threads have been joined
[2026-01-21 18:55:14] 2026-01-21 17:55:14,714 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 18:55:14] 2026-01-21 17:55:14,714 | INFO     | traces error code: 0
[2026-01-21 18:55:14] 2026-01-21 17:55:14,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 18:55:14] 2026-01-21 17:55:14,764 [wrapper] ==== pilot stdout END ====
[2026-01-21 18:55:14] 2026-01-21 17:55:14,765 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 18:55:14] 2026-01-21 17:55:14,766 [wrapper] pilotpid: 9724
[2026-01-21 18:55:14] 2026-01-21 17:55:14,767 [wrapper] Pilot exit status: 0
[2026-01-21 18:55:14] 2026-01-21 17:55:14,771 [wrapper] pandaids: 6976952751
[2026-01-21 18:55:14] 2026-01-21 17:55:14,794 [wrapper] cleanup supervisor_pilot 10903 9726
[2026-01-21 18:55:14] 2026-01-21 17:55:14,796 [wrapper] Test setup, not cleaning
[2026-01-21 18:55:14] 2026-01-21 17:55:14,797 [wrapper] apfmon messages muted
[2026-01-21 18:55:14] 2026-01-21 17:55:14,798 [wrapper] ==== wrapper stdout END ====
[2026-01-21 18:55:14] 2026-01-21 17:55:14,799 [wrapper] ==== wrapper stderr END ====
[2026-01-21 18:55:14]  *** Error codes and diagnostics ***
[2026-01-21 18:55:14]     "exeErrorCode": 0,
[2026-01-21 18:55:14]     "exeErrorDiag": "",
[2026-01-21 18:55:14]     "pilotErrorCode": 0,
[2026-01-21 18:55:14]     "pilotErrorDiag": "",
[2026-01-21 18:55:14]  *** Listing of results directory ***
[2026-01-21 18:55:14] total 425852
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user    584422 Jan 20 22:34 pilot3.tar.gz
[2026-01-21 18:55:14] -rwx------ 1 mf493845 unix-user     36322 Jan 20 22:37 runpilot2-wrapper.sh
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      5111 Jan 20 22:39 queuedata.json
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user       100 Jan 21 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 18:55:14] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 21 16:57 run_atlas
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user       105 Jan 21 16:57 job.xml
[2026-01-21 18:55:14] -rw-r--r-- 2 mf493845 unix-user 261404809 Jan 21 18:04 EVNT.48298377._000017.pool.root.1
[2026-01-21 18:55:14] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 21 18:04 start_atlas.sh
[2026-01-21 18:55:14] drwxrwx--x 2 mf493845 unix-user       100 Jan 21 18:04 shared
[2026-01-21 18:55:14] -rw-r--r-- 2 mf493845 unix-user    597780 Jan 21 18:04 input.tar.gz
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      6390 Jan 21 18:04 init_data.xml
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user         0 Jan 21 18:04 boinc_setup_complete
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      8192 Jan 21 18:04 boinc_mmap_file
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user         0 Jan 21 18:04 boinc_lockfile
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      2632 Jan 21 18:04 pandaJob.out
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user   1002771 Jan 21 18:05 agis_schedconf.cvmfs.json
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user   1516246 Jan 21 18:05 agis_ddmendpoints.agis.ALL.json
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user       420 Jan 21 18:05 workernode_map.json
[2026-01-21 18:55:14] drwx------ 5 mf493845 unix-user       440 Jan 21 18:05 pilot3
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user 169196554 Jan 21 18:54 HITS.48298381._000424.pool.root.1
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      1016 Jan 21 18:54 memory_monitor_summary.json
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user    313076 Jan 21 18:54 log.48298381._000424.job.log.tgz.1
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      6309 Jan 21 18:54 heartbeat.json
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user        95 Jan 21 18:54 pilot_heartbeat.json
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      5362 Jan 21 18:55 pilotlog.txt
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user    470518 Jan 21 18:55 log.48298381._000424.job.log.1
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user       357 Jan 21 18:55 output.list
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user       620 Jan 21 18:55 runtime_log
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user    798720 Jan 21 18:55 result.tar.gz
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user      9219 Jan 21 18:55 runtime_log.err
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user       642 Jan 21 18:55 2vILDm3aY28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkRqKDmn36zMm.diag
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user     21992 Jan 21 18:55 stderr.txt
[2026-01-21 18:55:14] HITS file was successfully produced:
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user 169196554 Jan 21 18:54 shared/HITS.pool.root.1
[2026-01-21 18:55:14]  *** Contents of shared directory: ***
[2026-01-21 18:55:14] total 421892
[2026-01-21 18:55:14] -rw-r--r-- 2 mf493845 unix-user 261404809 Jan 21 18:04 ATLAS.root_0
[2026-01-21 18:55:14] -rw-r--r-- 2 mf493845 unix-user     15845 Jan 21 18:04 start_atlas.sh
[2026-01-21 18:55:14] -rw-r--r-- 2 mf493845 unix-user    597780 Jan 21 18:04 input.tar.gz
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user 169196554 Jan 21 18:54 HITS.pool.root.1
[2026-01-21 18:55:14] -rw------- 1 mf493845 unix-user    798720 Jan 21 18:55 result.tar.gz
18:55:16 (26592): run_atlas exited; CPU time 18540.115932
18:55:16 (26592): called boinc_finish(0)

</stderr_txt>
]]>

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