Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
09:25:31 (368321): wrapper (7.7.26015): starting
09:25:31 (368321): wrapper: running run_atlas (--nthreads 12)
[2026-01-21 09:25:31] Arguments: --nthreads 12
[2026-01-21 09:25:31] Threads: 12
[2026-01-21 09:25:31] Checking for CVMFS
[2026-01-21 09:25:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 09:25:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 09:25:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 09:25:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 09:25:32] 2.12.7.0 196394 159 53176 155389 1 188 2660296 4194305 2697 130560 13 387016 99.533 142706 250 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-01-21 09:25:32] CVMFS is ok
[2026-01-21 09:25:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 09:25:32] Checking for apptainer binary...
[2026-01-21 09:25:32] apptainer is not installed, using version from CVMFS
[2026-01-21 09:25:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 09:25:32] Trebeth
[2026-01-21 09:25:32] apptainer works
[2026-01-21 09:25:32] Set ATHENA_PROC_NUMBER=12
[2026-01-21 09:25:32] Set ATHENA_CORE_NUMBER=12
[2026-01-21 09:25:32] Starting ATLAS job with PandaID=6976893985
[2026-01-21 09:25:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 10:27:15]  *** The last 200 lines of the pilot log: ***
[2026-01-21 10:27:15]  is_altstaged=None
[2026-01-21 10:27:15]  is_tar=False
[2026-01-21 10:27:15]  lfn=log.48301086._000140.job.log.tgz.1
[2026-01-21 10:27:15]  mtime=0
[2026-01-21 10:27:15]  protocol_id=None
[2026-01-21 10:27:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-21 10:27:15]  replicas=None
[2026-01-21 10:27:15]  scope=mc23_13p6TeV
[2026-01-21 10:27:15]  status=None
[2026-01-21 10:27:15]  status_code=0
[2026-01-21 10:27:15]  storage_token=
[2026-01-21 10:27:15]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6976893985/log.48301086._000140.job.log.tgz.1
[2026-01-21 10:27:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/d4/log.48301086._000140.job.log.tgz.1
[2026-01-21 10:27:15]  workdir=None
[2026-01-21 10:27:15] ]
[2026-01-21 10:27:15] 2026-01-21 15:26:40,220 | INFO     | transferring file log.48301086._000140.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6976893985/log.48301086._000140.job.log.tgz.1 to /var/lib/boinc
[2026-01-21 10:27:15] 2026-01-21 15:26:40,220 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6976893985/log.48301086._000140.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.483010
[2026-01-21 10:27:15] 2026-01-21 15:26:40,233 | INFO     | adding to output.list: log.48301086._000140.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9d/d4/log.48301086._000140.job.log.tg
[2026-01-21 10:27:15] 2026-01-21 15:26:40,234 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 10:27:15] 2026-01-21 15:26:40,234 | INFO     | summary of transferred files:
[2026-01-21 10:27:15] 2026-01-21 15:26:40,234 | INFO     |  -- lfn=log.48301086._000140.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 10:27:15] 2026-01-21 15:26:40,234 | INFO     | stage-out finished correctly
[2026-01-21 10:27:15] 2026-01-21 15:26:40,348 | INFO     | time since job start (3656s) is within the limit (349056.0s)
[2026-01-21 10:27:15] 2026-01-21 15:26:40,348 | INFO     | 3661s have passed since pilot start - server update state is 'RUNNING'
[2026-01-21 10:27:15] 2026-01-21 15:26:42,354 | INFO     | time since job start (3658s) is within the limit (349056.0s)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,025 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 10:27:15] 2026-01-21 15:26:43,483 | INFO     | job 6976893985 has state=finished
[2026-01-21 10:27:15] 2026-01-21 15:26:43,484 | INFO     | preparing for final server update for job 6976893985 in state='finished'
[2026-01-21 10:27:15] 2026-01-21 15:26:43,484 | INFO     | reading metadata from: /var/lib/boinc-client/slots/2/PanDA_Pilot-6976893985/jobReport.json
[2026-01-21 10:27:15] 2026-01-21 15:26:43,487 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/2/workernode_map.json
[2026-01-21 10:27:15] 2026-01-21 15:26:43,487 | INFO     | this job has now completed (state=finished)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,487 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,488 | INFO     | log transfer has been attempted: DONE
[2026-01-21 10:27:15] 2026-01-21 15:26:43,488 | INFO     | job 6976893985 has finished - writing final server update
[2026-01-21 10:27:15] 2026-01-21 15:26:43,488 | INFO     | total number of processed events: 400 (read)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,517 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6976893985/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,518 | INFO     | extracted standard info from prmon json
[2026-01-21 10:27:15] 2026-01-21 15:26:43,518 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 10:27:15] 2026-01-21 15:26:43,518 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 10:27:15] 2026-01-21 15:26:43,519 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 10:27:15] 2026-01-21 15:26:43,519 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 10:27:15] 2026-01-21 15:26:43,520 | INFO     | fitting pss+swap vs Time
[2026-01-21 10:27:15] 2026-01-21 15:26:43,521 | INFO     | sum of square deviations: 46147842.0
[2026-01-21 10:27:15] 2026-01-21 15:26:43,521 | INFO     | sum of deviations: 2313094562.9999995
[2026-01-21 10:27:15] 2026-01-21 15:26:43,521 | INFO     | mean x: 1769007454.0
[2026-01-21 10:27:15] 2026-01-21 15:26:43,521 | INFO     | mean y: 2652242.2264150945
[2026-01-21 10:27:15] 2026-01-21 15:26:43,521 | INFO     | intersect: -88666315718.48282
[2026-01-21 10:27:15] 2026-01-21 15:26:43,521 | INFO     | chi2: 0.05699225486716697
[2026-01-21 10:27:15] 2026-01-21 15:26:43,522 | INFO     | current memory leak: 50.12 B/s (using 53 data points, chi2=0.06)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,522 | INFO     | could have reported an average CPU frequency of 2148 MHz (6 samples)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,522 | INFO     | ..............................
[2026-01-21 10:27:15] 2026-01-21 15:26:43,522 | INFO     | . Timing measurements:
[2026-01-21 10:27:15] 2026-01-21 15:26:43,522 | INFO     | . get job = 0 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,522 | INFO     | . initial setup = 5 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,523 | INFO     | . payload setup = 4 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,523 | INFO     | . stage-in = 0 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,523 | INFO     | . payload execution = 3636 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,523 | INFO     | . stage-out = 0 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,523 | INFO     | . log creation = 0 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,523 | INFO     | ..............................
[2026-01-21 10:27:15] 2026-01-21 15:26:43,610 | INFO     | 
[2026-01-21 10:27:15] 2026-01-21 15:26:43,610 | INFO     | job summary report
[2026-01-21 10:27:15] 2026-01-21 15:26:43,610 | INFO     | --------------------------------------------------
[2026-01-21 10:27:15] 2026-01-21 15:26:43,610 | INFO     | PanDA job id: 6976893985
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | task id: 48301086
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | errors: (none)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | pilot state: finished 
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | transexitcode: 0
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | exeerrorcode: 0
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | exeerrordiag: 
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | exitcode: 0
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | exitmsg: OK
[2026-01-21 10:27:15] 2026-01-21 15:26:43,611 | INFO     | cpuconsumptiontime: 38107 s
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | nevents: 400
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | neventsw: 0
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | pid: 377085
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | pgrp: 377085
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | corecount: 12
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | event service: False
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | sizes: {0: 2284239, 11: 2284239, 3643: 2310056, 3644: 2319068, 3647: 2319124, 3648: 2319318}
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | --------------------------------------------------
[2026-01-21 10:27:15] 2026-01-21 15:26:43,612 | INFO     | 
[2026-01-21 10:27:15] 2026-01-21 15:26:43,613 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,632 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 10:27:15] 2026-01-21 15:26:43,633 | INFO     | job 6976893985 has completed (purged errors)
[2026-01-21 10:27:15] 2026-01-21 15:26:43,633 | INFO     | overall cleanup function is called
[2026-01-21 10:27:15] 2026-01-21 15:26:44,080 | WARNING  | process 377085 can no longer be monitored (due to stat problems) - aborting
[2026-01-21 10:27:15] 2026-01-21 15:26:44,263 | INFO     | using path: /var/lib/boinc-client/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 10:27:15] 2026-01-21 15:26:44,486 | INFO     | number of running child processes to parent process 377085: 1
[2026-01-21 10:27:15] 2026-01-21 15:26:44,486 | INFO     | maximum number of monitored processes: 6
[2026-01-21 10:27:15] 2026-01-21 15:26:44,486 | INFO     | aborting job monitoring since job object (job id=6976893985) has expired
[2026-01-21 10:27:15] 2026-01-21 15:26:44,641 | INFO     | --- collectZombieJob: --- 10, [377085]
[2026-01-21 10:27:15] 2026-01-21 15:26:44,641 | INFO     | zombie collector waiting for pid 377085
[2026-01-21 10:27:15] 2026-01-21 15:26:44,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 10:27:15] 2026-01-21 15:26:44,641 | INFO     | collected zombie processes
[2026-01-21 10:27:15] 2026-01-21 15:26:44,641 | INFO     | will attempt to kill all subprocesses of pid=377085
[2026-01-21 10:27:15] 2026-01-21 15:26:44,869 | INFO     | process IDs to be killed: [377085] (in reverse order)
[2026-01-21 10:27:15] 2026-01-21 15:26:44,929 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 10:27:15] 2026-01-21 15:26:44,930 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 10:27:15] 2026-01-21 15:26:44,936 | INFO     | did not find any defunct processes belonging to 377085
[2026-01-21 10:27:15] 2026-01-21 15:26:44,942 | INFO     | did not find any defunct processes belonging to 377085
[2026-01-21 10:27:15] 2026-01-21 15:26:44,942 | INFO     | ready for new job
[2026-01-21 10:27:15] 2026-01-21 15:26:44,942 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 10:27:15] 2026-01-21 15:26:44,945 | INFO     | **************************************
[2026-01-21 10:27:15] 2026-01-21 15:26:44,945 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 10:27:15] 2026-01-21 15:26:44,945 | INFO     | **************************************
[2026-01-21 10:27:15] 2026-01-21 15:26:44,945 | INFO     | 
[2026-01-21 10:27:15] 2026-01-21 15:26:44,966 | INFO     | architecture information:
[2026-01-21 10:27:15] 2026-01-21 15:26:44,967 | INFO     | executing command: cat /etc/os-release
[2026-01-21 10:27:15] 2026-01-21 15:26:44,978 | INFO     | cat /etc/os-release:
[2026-01-21 10:27:15] NAME="CentOS Linux"
[2026-01-21 10:27:15] VERSION="7 (Core)"
[2026-01-21 10:27:15] ID="centos"
[2026-01-21 10:27:15] ID_LIKE="rhel fedora"
[2026-01-21 10:27:15] VERSION_ID="7"
[2026-01-21 10:27:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 10:27:15] ANSI_COLOR="0;31"
[2026-01-21 10:27:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 10:27:15] HOME_URL="https://www.centos.org/"
[2026-01-21 10:27:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 10:27:15] 
[2026-01-21 10:27:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 10:27:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 10:27:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 10:27:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 10:27:15] 
[2026-01-21 10:27:15] 2026-01-21 15:26:44,979 | INFO     | **************************************
[2026-01-21 10:27:15] 2026-01-21 15:26:45,482 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2026-01-21 10:27:15] 2026-01-21 15:26:45,493 | INFO     | sufficient remaining disk space (391550861312 B)
[2026-01-21 10:27:15] 2026-01-21 15:26:45,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 10:27:15] 2026-01-21 15:26:45,494 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 10:27:15] 2026-01-21 15:26:45,494 | INFO     | update_server=False
[2026-01-21 10:27:15] 2026-01-21 15:26:45,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 10:27:15] 2026-01-21 15:26:45,494 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:27:15] 2026-01-21 15:26:45,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:27:15] 2026-01-21 15:26:45,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 10:27:15] 2026-01-21 15:26:45,495 | INFO     | aborting loop
[2026-01-21 10:27:15] 2026-01-21 15:26:45,602 | INFO     | all payload control threads have been joined
[2026-01-21 10:27:15] 2026-01-21 15:26:45,640 | INFO     | all data control threads have been joined
[2026-01-21 10:27:15] 2026-01-21 15:26:45,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 10:27:15] 2026-01-21 15:26:46,495 | INFO     | [job] retrieve thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:46,499 | INFO     | [job] queue monitor thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:46,500 | INFO     | [job] job monitor thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:46,605 | INFO     | [payload] control thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:46,623 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:46,643 | INFO     | [data] control thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:46,959 | INFO     | [payload] validate_post thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:46,979 | INFO     | [job] validate thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:47,118 | INFO     | all job control threads have been joined
[2026-01-21 10:27:15] 2026-01-21 15:26:47,329 | INFO     | [payload] failed_post thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:47,341 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:47,399 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:47,528 | INFO     | [data] copytool_in thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:47,839 | INFO     | [data] copytool_out thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:47,967 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:48,119 | INFO     | [job] control thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:49,501 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 10:27:15] 2026-01-21 15:26:50,019 | INFO     | [monitor] cgroup control has ended
[2026-01-21 10:27:15] 2026-01-21 15:26:51,402 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781598398272)>', '<ExcThread(monitor, started 139781178648320)>']
[2026-01-21 10:27:15] 2026-01-21 15:26:56,427 | INFO     | all workflow threads have been joined
[2026-01-21 10:27:15] 2026-01-21 15:26:56,427 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 10:27:15] 2026-01-21 15:26:56,428 | INFO     | traces error code: 0
[2026-01-21 10:27:15] 2026-01-21 15:26:56,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 10:27:15] 2026-01-21 15:27:15,705 | INFO     | PID=372289 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 10:27:15] 2026-01-21 15:27:15,705 | INFO     | .. there are 4 such processes running
[2026-01-21 10:27:15] 2026-01-21 15:27:15,706 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 10:27:15] 2026-01-21 15:27:15,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 10:27:15] 2026-01-21 15:27:15,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 10:27:15] 2026-01-21 15:27:15,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 10:27:15] 2026-01-21 15:27:15,706 | INFO     | [monitor] control thread has ended
[2026-01-21 10:27:15] 2026-01-21 15:27:15,802 [wrapper] ==== pilot stdout END ====
[2026-01-21 10:27:15] 2026-01-21 15:27:15,804 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 10:27:15] 2026-01-21 15:27:15,806 [wrapper] pilotpid: 372289
[2026-01-21 10:27:15] 2026-01-21 15:27:15,807 [wrapper] Pilot exit status: 0
[2026-01-21 10:27:15] 2026-01-21 15:27:15,815 [wrapper] pandaids: 6976893985
[2026-01-21 10:27:15] 2026-01-21 15:27:15,854 [wrapper] cleanup supervisor_pilot  457153 372290
[2026-01-21 10:27:15] 2026-01-21 15:27:15,857 [wrapper] Test setup, not cleaning
[2026-01-21 10:27:15] 2026-01-21 15:27:15,858 [wrapper] apfmon messages muted
[2026-01-21 10:27:15] 2026-01-21 15:27:15,863 [wrapper] ==== wrapper stdout END ====
[2026-01-21 10:27:15] 2026-01-21 15:27:15,865 [wrapper] ==== wrapper stderr END ====
[2026-01-21 10:27:15]  *** Error codes and diagnostics ***
[2026-01-21 10:27:15]     "exeErrorCode": 0,
[2026-01-21 10:27:15]     "exeErrorDiag": "",
[2026-01-21 10:27:15]     "pilotErrorCode": 0,
[2026-01-21 10:27:15]     "pilotErrorDiag": "",
[2026-01-21 10:27:15]  *** Listing of results directory ***
[2026-01-21 10:27:15] total 672040
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc    584422 Jan 20 16:34 pilot3.tar.gz
[2026-01-21 10:27:15] -rwx------ 1 boinc boinc     36322 Jan 20 16:36 runpilot2-wrapper.sh
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc      5111 Jan 20 16:37 queuedata.json
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc       100 Jan 21 09:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 10:27:15] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 09:25 run_atlas
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc       105 Jan 21 09:25 job.xml
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc      7579 Jan 21 09:25 init_data.xml
[2026-01-21 10:27:15] -rw-r--r-- 2 boinc boinc 495576437 Jan 21 09:25 EVNT.48301084._000003.pool.root.1
[2026-01-21 10:27:15] -rw-r--r-- 2 boinc boinc     15845 Jan 21 09:25 start_atlas.sh
[2026-01-21 10:27:15] drwxrwx--x 2 boinc boinc      4096 Jan 21 09:25 shared
[2026-01-21 10:27:15] -rw-r--r-- 2 boinc boinc    597751 Jan 21 09:25 input.tar.gz
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc         0 Jan 21 09:25 boinc_lockfile
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc      2517 Jan 21 09:25 pandaJob.out
[2026-01-21 10:27:15] -rw------- 1 boinc boinc        50 Jan 21 09:25 setup.sh.local
[2026-01-21 10:27:15] -rw------- 1 boinc boinc   1002709 Jan 21 09:25 agis_schedconf.cvmfs.json
[2026-01-21 10:27:15] -rw------- 1 boinc boinc   1516246 Jan 21 09:25 agis_ddmendpoints.agis.ALL.json
[2026-01-21 10:27:15] -rw------- 1 boinc boinc       429 Jan 21 09:25 workernode_map.json
[2026-01-21 10:27:15] drwx------ 5 boinc boinc      4096 Jan 21 09:25 pilot3
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc       530 Jan 21 10:26 boinc_task_state.xml
[2026-01-21 10:27:15] -rw------- 1 boinc boinc 186728844 Jan 21 10:26 HITS.48301086._000140.pool.root.1
[2026-01-21 10:27:15] -rw------- 1 boinc boinc        95 Jan 21 10:26 pilot_heartbeat.json
[2026-01-21 10:27:15] -rw------- 1 boinc boinc      1030 Jan 21 10:26 memory_monitor_summary.json
[2026-01-21 10:27:15] -rw------- 1 boinc boinc    404217 Jan 21 10:26 log.48301086._000140.job.log.tgz.1
[2026-01-21 10:27:15] -rw------- 1 boinc boinc      6331 Jan 21 10:26 heartbeat.json
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc      8192 Jan 21 10:27 boinc_mmap_file
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc        27 Jan 21 10:27 wrapper_checkpoint.txt
[2026-01-21 10:27:15] -rw------- 1 boinc boinc       821 Jan 21 10:27 pilotlog.txt
[2026-01-21 10:27:15] -rw------- 1 boinc boinc    556804 Jan 21 10:27 log.48301086._000140.job.log.1
[2026-01-21 10:27:15] -rw------- 1 boinc boinc       357 Jan 21 10:27 output.list
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc       620 Jan 21 10:27 runtime_log
[2026-01-21 10:27:15] -rw------- 1 boinc boinc    983040 Jan 21 10:27 result.tar.gz
[2026-01-21 10:27:15] -rw------- 1 boinc boinc       650 Jan 21 10:27 ZYJLDmkZY28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcPqKDmj0bpIn.diag
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc      9403 Jan 21 10:27 runtime_log.err
[2026-01-21 10:27:15] -rw-r--r-- 1 boinc boinc     21242 Jan 21 10:27 stderr.txt
[2026-01-21 10:27:15] HITS file was successfully produced:
[2026-01-21 10:27:15] -rw------- 1 boinc boinc 186728844 Jan 21 10:26 shared/HITS.pool.root.1
[2026-01-21 10:27:15]  *** Contents of shared directory: ***
[2026-01-21 10:27:15] total 667888
[2026-01-21 10:27:15] -rw-r--r-- 2 boinc boinc 495576437 Jan 21 09:25 ATLAS.root_0
[2026-01-21 10:27:15] -rw-r--r-- 2 boinc boinc     15845 Jan 21 09:25 start_atlas.sh
[2026-01-21 10:27:15] -rw-r--r-- 2 boinc boinc    597751 Jan 21 09:25 input.tar.gz
[2026-01-21 10:27:15] -rw------- 1 boinc boinc 186728844 Jan 21 10:26 HITS.pool.root.1
[2026-01-21 10:27:15] -rw------- 1 boinc boinc    983040 Jan 21 10:27 result.tar.gz
10:27:17 (368321): run_atlas exited; CPU time 38187.603581
10:27:17 (368321): called boinc_finish(0)

</stderr_txt>
]]>

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