Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
09:22:21 (353864): wrapper (7.7.26015): starting
09:22:21 (353864): wrapper: running run_atlas (--nthreads 12)
[2026-01-21 09:22:21] Arguments: --nthreads 12
[2026-01-21 09:22:21] Threads: 12
[2026-01-21 09:22:21] Checking for CVMFS
[2026-01-21 09:22:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 09:22:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 09:22:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 09:22:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 09:22:24] 2.12.7.0 196394 156 53832 155389 0 188 2657995 4194305 2751 130560 13 351813 99.488 142705 250 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-01-21 09:22:24] CVMFS is ok
[2026-01-21 09:22:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 09:22:24] Checking for apptainer binary...
[2026-01-21 09:22:24] apptainer is not installed, using version from CVMFS
[2026-01-21 09:22:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 09:22:24] Trebeth
[2026-01-21 09:22:24] apptainer works
[2026-01-21 09:22:24] Set ATHENA_PROC_NUMBER=12
[2026-01-21 09:22:24] Set ATHENA_CORE_NUMBER=12
[2026-01-21 09:22:24] Starting ATLAS job with PandaID=6977079606
[2026-01-21 09:22:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 10:22:51]  *** The last 200 lines of the pilot log: ***
[2026-01-21 10:22:51]  filetype=log
[2026-01-21 10:22:51]  guid=b8ddb6ab-3776-412a-8a7c-5dd0e6d4a583
[2026-01-21 10:22:51]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-21 10:22:51]  is_altstaged=None
[2026-01-21 10:22:51]  is_tar=False
[2026-01-21 10:22:51]  lfn=log.48301086._001454.job.log.tgz.1
[2026-01-21 10:22:51]  mtime=0
[2026-01-21 10:22:51]  protocol_id=None
[2026-01-21 10:22:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-21 10:22:51]  replicas=None
[2026-01-21 10:22:51]  scope=mc23_13p6TeV
[2026-01-21 10:22:51]  status=None
[2026-01-21 10:22:51]  status_code=0
[2026-01-21 10:22:51]  storage_token=
[2026-01-21 10:22:51]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6977079606/log.48301086._001454.job.log.tgz.1
[2026-01-21 10:22:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/e7/log.48301086._001454.job.log.tgz.1
[2026-01-21 10:22:51]  workdir=None
[2026-01-21 10:22:51] ]
[2026-01-21 10:22:51] 2026-01-21 15:22:09,697 | INFO     | transferring file log.48301086._001454.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6977079606/log.48301086._001454.job.log.tgz.1 to /var/lib/boinc
[2026-01-21 10:22:51] 2026-01-21 15:22:09,698 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6977079606/log.48301086._001454.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.483010
[2026-01-21 10:22:51] 2026-01-21 15:22:09,711 | INFO     | adding to output.list: log.48301086._001454.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/e7/log.48301086._001454.job.log.tg
[2026-01-21 10:22:51] 2026-01-21 15:22:09,712 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-21 10:22:51] 2026-01-21 15:22:09,712 | INFO     | summary of transferred files:
[2026-01-21 10:22:51] 2026-01-21 15:22:09,712 | INFO     |  -- lfn=log.48301086._001454.job.log.tgz.1, status_code=0, status=transferred
[2026-01-21 10:22:51] 2026-01-21 15:22:09,713 | INFO     | stage-out finished correctly
[2026-01-21 10:22:51] 2026-01-21 15:22:09,758 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-21 10:22:51] 2026-01-21 15:22:11,044 | INFO     | time since job start (3570s) is within the limit (349056.0s)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,179 | INFO     | monitor loop #270: job 0:6977079606 is in state 'finished'
[2026-01-21 10:22:51] 2026-01-21 15:22:11,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,907 | INFO     | job 6977079606 has state=finished
[2026-01-21 10:22:51] 2026-01-21 15:22:11,908 | INFO     | preparing for final server update for job 6977079606 in state='finished'
[2026-01-21 10:22:51] 2026-01-21 15:22:11,908 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-6977079606/jobReport.json
[2026-01-21 10:22:51] 2026-01-21 15:22:11,910 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-01-21 10:22:51] 2026-01-21 15:22:11,911 | INFO     | this job has now completed (state=finished)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,911 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,911 | INFO     | log transfer has been attempted: DONE
[2026-01-21 10:22:51] 2026-01-21 15:22:11,911 | INFO     | job 6977079606 has finished - writing final server update
[2026-01-21 10:22:51] 2026-01-21 15:22:11,912 | INFO     | total number of processed events: 400 (read)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,945 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6977079606/memory_monitor_summary.json (trf name=prmon)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,946 | INFO     | extracted standard info from prmon json
[2026-01-21 10:22:51] 2026-01-21 15:22:11,946 | INFO     | extracted standard memory fields from prmon json
[2026-01-21 10:22:51] 2026-01-21 15:22:11,946 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-21 10:22:51] 2026-01-21 15:22:11,946 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-21 10:22:51] 2026-01-21 15:22:11,947 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-21 10:22:51] 2026-01-21 15:22:11,948 | INFO     | fitting pss+swap vs Time
[2026-01-21 10:22:51] 2026-01-21 15:22:11,948 | INFO     | sum of square deviations: 43584073.0
[2026-01-21 10:22:51] 2026-01-21 15:22:11,949 | INFO     | sum of deviations: 1797358137.5
[2026-01-21 10:22:51] 2026-01-21 15:22:11,949 | INFO     | mean x: 1769007240.5
[2026-01-21 10:22:51] 2026-01-21 15:22:11,949 | INFO     | mean y: 2658902.326923077
[2026-01-21 10:22:51] 2026-01-21 15:22:11,949 | INFO     | intersect: -72949209524.68068
[2026-01-21 10:22:51] 2026-01-21 15:22:11,949 | INFO     | chi2: 0.05336925748749271
[2026-01-21 10:22:51] 2026-01-21 15:22:11,949 | INFO     | current memory leak: 41.24 B/s (using 52 data points, chi2=0.05)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | could have reported an average CPU frequency of 2813 MHz (5 samples)
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | ..............................
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | . Timing measurements:
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | . get job = 0 s
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | . initial setup = 5 s
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | . payload setup = 4 s
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | . stage-in = 0 s
[2026-01-21 10:22:51] 2026-01-21 15:22:11,950 | INFO     | . payload execution = 3549 s
[2026-01-21 10:22:51] 2026-01-21 15:22:11,951 | INFO     | . stage-out = 0 s
[2026-01-21 10:22:51] 2026-01-21 15:22:11,951 | INFO     | . log creation = 0 s
[2026-01-21 10:22:51] 2026-01-21 15:22:11,951 | INFO     | ..............................
[2026-01-21 10:22:51] 2026-01-21 15:22:12,042 | INFO     | 
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | job summary report
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | --------------------------------------------------
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | PanDA job id: 6977079606
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | task id: 48301086
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | errors: (none)
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | pilot state: finished 
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | transexitcode: 0
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | exeerrorcode: 0
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | exeerrordiag: 
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | exitcode: 0
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | exitmsg: OK
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | cpuconsumptiontime: 36461 s
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | nevents: 400
[2026-01-21 10:22:51] 2026-01-21 15:22:12,043 | INFO     | neventsw: 0
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | pid: 363008
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | pgrp: 363008
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | corecount: 12
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | event service: False
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | sizes: {0: 2283810, 1: 2284271, 11: 2284271, 3557: 2309978, 3558: 2319046, 3560: 2319216}
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | --------------------------------------------------
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | 
[2026-01-21 10:22:51] 2026-01-21 15:22:12,044 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-01-21 10:22:51] 2026-01-21 15:22:12,061 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,061 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 10:22:51] 2026-01-21 15:22:12,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,064 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 10:22:51] 2026-01-21 15:22:12,064 | INFO     | job 6977079606 has completed (purged errors)
[2026-01-21 10:22:51] 2026-01-21 15:22:12,064 | INFO     | overall cleanup function is called
[2026-01-21 10:22:51] 2026-01-21 15:22:13,072 | INFO     | --- collectZombieJob: --- 10, [363008]
[2026-01-21 10:22:51] 2026-01-21 15:22:13,072 | INFO     | zombie collector waiting for pid 363008
[2026-01-21 10:22:51] 2026-01-21 15:22:13,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 10:22:51] 2026-01-21 15:22:13,072 | INFO     | collected zombie processes
[2026-01-21 10:22:51] 2026-01-21 15:22:13,073 | INFO     | will attempt to kill all subprocesses of pid=363008
[2026-01-21 10:22:51] 2026-01-21 15:22:13,266 | INFO     | process IDs to be killed: [363008] (in reverse order)
[2026-01-21 10:22:51] 2026-01-21 15:22:13,314 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 10:22:51] 2026-01-21 15:22:13,314 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 10:22:51] 2026-01-21 15:22:13,320 | INFO     | did not find any defunct processes belonging to 363008
[2026-01-21 10:22:51] 2026-01-21 15:22:13,325 | INFO     | did not find any defunct processes belonging to 363008
[2026-01-21 10:22:51] 2026-01-21 15:22:13,325 | INFO     | ready for new job
[2026-01-21 10:22:51] 2026-01-21 15:22:13,325 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 10:22:51] 2026-01-21 15:22:13,326 | INFO     | **************************************
[2026-01-21 10:22:51] 2026-01-21 15:22:13,326 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 10:22:51] 2026-01-21 15:22:13,326 | INFO     | **************************************
[2026-01-21 10:22:51] 2026-01-21 15:22:13,326 | INFO     | 
[2026-01-21 10:22:51] 2026-01-21 15:22:13,350 | INFO     | architecture information:
[2026-01-21 10:22:51] 2026-01-21 15:22:13,351 | INFO     | executing command: cat /etc/os-release
[2026-01-21 10:22:51] 2026-01-21 15:22:13,359 | INFO     | cat /etc/os-release:
[2026-01-21 10:22:51] NAME="CentOS Linux"
[2026-01-21 10:22:51] VERSION="7 (Core)"
[2026-01-21 10:22:51] ID="centos"
[2026-01-21 10:22:51] ID_LIKE="rhel fedora"
[2026-01-21 10:22:51] VERSION_ID="7"
[2026-01-21 10:22:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 10:22:51] ANSI_COLOR="0;31"
[2026-01-21 10:22:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 10:22:51] HOME_URL="https://www.centos.org/"
[2026-01-21 10:22:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 10:22:51] 
[2026-01-21 10:22:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 10:22:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 10:22:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 10:22:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 10:22:51] 
[2026-01-21 10:22:51] 2026-01-21 15:22:13,360 | INFO     | **************************************
[2026-01-21 10:22:51] 2026-01-21 15:22:13,863 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-01-21 10:22:51] 2026-01-21 15:22:13,876 | INFO     | sufficient remaining disk space (391694516224 B)
[2026-01-21 10:22:51] 2026-01-21 15:22:13,876 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 10:22:51] 2026-01-21 15:22:13,876 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 10:22:51] 2026-01-21 15:22:13,876 | INFO     | update_server=False
[2026-01-21 10:22:51] 2026-01-21 15:22:13,876 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 10:22:51] 2026-01-21 15:22:13,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:22:51] 2026-01-21 15:22:14,103 | INFO     | all data control threads have been joined
[2026-01-21 10:22:51] 2026-01-21 15:22:14,495 | INFO     | job.realtimelogging is not enabled
[2026-01-21 10:22:51] 2026-01-21 15:22:14,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:22:51] 2026-01-21 15:22:14,684 | INFO     | aborting loop
[2026-01-21 10:22:51] 2026-01-21 15:22:14,879 | INFO     | [job] queue monitor thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:14,880 | INFO     | [job] retrieve thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:14,899 | INFO     | [payload] validate_post thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:14,935 | INFO     | [job] validate thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,107 | INFO     | [data] control thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,111 | INFO     | all payload control threads have been joined
[2026-01-21 10:22:51] 2026-01-21 15:22:15,187 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,227 | INFO     | all job control threads have been joined
[2026-01-21 10:22:51] 2026-01-21 15:22:15,231 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,263 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 10:22:51] 2026-01-21 15:22:15,499 | INFO     | [payload] failed_post thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,499 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,624 | INFO     | [data] copytool_in thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,687 | INFO     | [job] job monitor thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:15,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 10:22:51] 2026-01-21 15:22:16,019 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:16,117 | INFO     | [payload] control thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:16,233 | INFO     | [job] control thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:17,267 | INFO     | [data] copytool_out thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:19,857 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 10:22:51] 2026-01-21 15:22:34,814 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-01-21 10:22:51] 2026-01-21 15:22:44,319 | INFO     | PID=358219 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 10:22:51] 2026-01-21 15:22:44,319 | INFO     | .. there are 4 such processes running
[2026-01-21 10:22:51] 2026-01-21 15:22:44,319 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 10:22:51] 2026-01-21 15:22:44,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 10:22:51] 2026-01-21 15:22:44,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 10:22:51] 2026-01-21 15:22:46,271 | INFO     | [monitor] cgroup control has ended
[2026-01-21 10:22:51] 2026-01-21 15:22:46,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139696838272832)>', '<ExcThread(monitor, started 139696386582272)>']
[2026-01-21 10:22:51] 2026-01-21 15:22:47,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 10:22:51] 2026-01-21 15:22:47,332 | INFO     | [monitor] control thread has ended
[2026-01-21 10:22:51] 2026-01-21 15:22:51,687 | INFO     | all workflow threads have been joined
[2026-01-21 10:22:51] 2026-01-21 15:22:51,688 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 10:22:51] 2026-01-21 15:22:51,688 | INFO     | traces error code: 0
[2026-01-21 10:22:51] 2026-01-21 15:22:51,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 10:22:51] 2026-01-21 15:22:51,780 [wrapper] ==== pilot stdout END ====
[2026-01-21 10:22:51] 2026-01-21 15:22:51,782 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 10:22:51] 2026-01-21 15:22:51,784 [wrapper] pilotpid: 358219
[2026-01-21 10:22:51] 2026-01-21 15:22:51,786 [wrapper] Pilot exit status: 0
[2026-01-21 10:22:51] 2026-01-21 15:22:51,792 [wrapper] pandaids: 6977079606
[2026-01-21 10:22:51] 2026-01-21 15:22:51,821 [wrapper] cleanup supervisor_pilot  442788 358220
[2026-01-21 10:22:51] 2026-01-21 15:22:51,823 [wrapper] Test setup, not cleaning
[2026-01-21 10:22:51] 2026-01-21 15:22:51,826 [wrapper] apfmon messages muted
[2026-01-21 10:22:51] 2026-01-21 15:22:51,828 [wrapper] ==== wrapper stdout END ====
[2026-01-21 10:22:51] 2026-01-21 15:22:51,829 [wrapper] ==== wrapper stderr END ====
[2026-01-21 10:22:51]  *** Error codes and diagnostics ***
[2026-01-21 10:22:51]     "exeErrorCode": 0,
[2026-01-21 10:22:51]     "exeErrorDiag": "",
[2026-01-21 10:22:51]     "pilotErrorCode": 0,
[2026-01-21 10:22:51]     "pilotErrorDiag": "",
[2026-01-21 10:22:51]  *** Listing of results directory ***
[2026-01-21 10:22:51] total 668252
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc    584422 Jan 20 20:23 pilot3.tar.gz
[2026-01-21 10:22:51] -rwx------ 1 boinc boinc     36322 Jan 20 20:24 runpilot2-wrapper.sh
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc      5111 Jan 20 20:24 queuedata.json
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc       100 Jan 21 09:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 10:22:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 09:22 run_atlas
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc       105 Jan 21 09:22 job.xml
[2026-01-21 10:22:51] -rw-r--r-- 2 boinc boinc     15845 Jan 21 09:22 start_atlas.sh
[2026-01-21 10:22:51] drwxrwx--x 2 boinc boinc      4096 Jan 21 09:22 shared
[2026-01-21 10:22:51] -rw-r--r-- 2 boinc boinc    597760 Jan 21 09:22 input.tar.gz
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc      7579 Jan 21 09:22 init_data.xml
[2026-01-21 10:22:51] -rw-r--r-- 2 boinc boinc 494581044 Jan 21 09:22 EVNT.48301084._000030.pool.root.1
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc         0 Jan 21 09:22 boinc_lockfile
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc      2519 Jan 21 09:22 pandaJob.out
[2026-01-21 10:22:51] -rw------- 1 boinc boinc        50 Jan 21 09:22 setup.sh.local
[2026-01-21 10:22:51] -rw------- 1 boinc boinc   1002709 Jan 21 09:22 agis_schedconf.cvmfs.json
[2026-01-21 10:22:51] -rw------- 1 boinc boinc   1516246 Jan 21 09:22 agis_ddmendpoints.agis.ALL.json
[2026-01-21 10:22:51] -rw------- 1 boinc boinc       430 Jan 21 09:22 workernode_map.json
[2026-01-21 10:22:51] drwx------ 5 boinc boinc      4096 Jan 21 09:22 pilot3
[2026-01-21 10:22:51] -rw------- 1 boinc boinc 183963212 Jan 21 10:21 HITS.48301086._001454.pool.root.1
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc       530 Jan 21 10:21 boinc_task_state.xml
[2026-01-21 10:22:51] -rw------- 1 boinc boinc      1043 Jan 21 10:22 memory_monitor_summary.json
[2026-01-21 10:22:51] -rw------- 1 boinc boinc    359403 Jan 21 10:22 log.48301086._001454.job.log.tgz.1
[2026-01-21 10:22:51] -rw------- 1 boinc boinc      6336 Jan 21 10:22 heartbeat.json
[2026-01-21 10:22:51] -rw------- 1 boinc boinc        95 Jan 21 10:22 pilot_heartbeat.json
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc      8192 Jan 21 10:22 boinc_mmap_file
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc        27 Jan 21 10:22 wrapper_checkpoint.txt
[2026-01-21 10:22:51] -rw------- 1 boinc boinc      4898 Jan 21 10:22 pilotlog.txt
[2026-01-21 10:22:51] -rw------- 1 boinc boinc    542945 Jan 21 10:22 log.48301086._001454.job.log.1
[2026-01-21 10:22:51] -rw------- 1 boinc boinc       357 Jan 21 10:22 output.list
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc       620 Jan 21 10:22 runtime_log
[2026-01-21 10:22:51] -rw------- 1 boinc boinc    921600 Jan 21 10:22 result.tar.gz
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc      9403 Jan 21 10:22 runtime_log.err
[2026-01-21 10:22:51] -rw------- 1 boinc boinc       650 Jan 21 10:22 QN1NDmT8b28n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3nqKDmlGBPhm.diag
[2026-01-21 10:22:51] -rw-r--r-- 1 boinc boinc     20976 Jan 21 10:22 stderr.txt
[2026-01-21 10:22:51] HITS file was successfully produced:
[2026-01-21 10:22:51] -rw------- 1 boinc boinc 183963212 Jan 21 10:21 shared/HITS.pool.root.1
[2026-01-21 10:22:51]  *** Contents of shared directory: ***
[2026-01-21 10:22:51] total 664152
[2026-01-21 10:22:51] -rw-r--r-- 2 boinc boinc     15845 Jan 21 09:22 start_atlas.sh
[2026-01-21 10:22:51] -rw-r--r-- 2 boinc boinc    597760 Jan 21 09:22 input.tar.gz
[2026-01-21 10:22:51] -rw-r--r-- 2 boinc boinc 494581044 Jan 21 09:22 ATLAS.root_0
[2026-01-21 10:22:51] -rw------- 1 boinc boinc 183963212 Jan 21 10:21 HITS.pool.root.1
[2026-01-21 10:22:51] -rw------- 1 boinc boinc    921600 Jan 21 10:22 result.tar.gz
10:22:52 (353864): run_atlas exited; CPU time 36521.872644
10:22:52 (353864): called boinc_finish(0)

</stderr_txt>
]]>

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