Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:05:02 (154905): wrapper (7.7.26015): starting
18:05:02 (154905): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 18:05:02] Arguments: --nthreads 3
[2026-01-21 18:05:02] Threads: 3
[2026-01-21 18:05:02] Checking for CVMFS
[2026-01-21 18:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 18:05:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 18:05:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 18:05:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 18:05:23] 2.9.2.0 41747 349 53012 155392 1 186 12751683 36864001 0 130560 0 148568 99.986 9971 8233 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 18:05:23] CVMFS is ok
[2026-01-21 18:05:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 18:05:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 18:05:23] Further information can be found at the LHC@home message board.
[2026-01-21 18:05:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 18:05:23] Checking for apptainer binary...
[2026-01-21 18:05:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 18:05:23] Running /usr/bin/apptainer --version
[2026-01-21 18:05:23] apptainer version 1.4.1-1.1
[2026-01-21 18:05:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 18:05:23] atlasA221b
[2026-01-21 18:05:23] apptainer works
[2026-01-21 18:05:23] Set ATHENA_PROC_NUMBER=3
[2026-01-21 18:05:23] Set ATHENA_CORE_NUMBER=3
[2026-01-21 18:05:23] Starting ATLAS job with PandaID=6977086701
[2026-01-21 18:05:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:54:52 (173534): wrapper (7.7.26015): starting
18:54:52 (173534): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 18:54:52] Arguments: --nthreads 3
[2026-01-21 18:54:52] Threads: 3
[2026-01-21 18:54:52] This job has been restarted, cleaning up previous attempt
[2026-01-21 18:54:52] Checking for CVMFS
[2026-01-21 18:54:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 18:54:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 18:54:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 18:54:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 18:54:53] 2.9.2.0 41747 399 53316 155392 3 188 12756670 36864001 0 130560 0 187026 99.989 9979 7932 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 18:54:53] CVMFS is ok
[2026-01-21 18:54:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 18:54:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 18:54:53] Further information can be found at the LHC@home message board.
[2026-01-21 18:54:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 18:54:53] Checking for apptainer binary...
[2026-01-21 18:54:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 18:54:53] Running /usr/bin/apptainer --version
[2026-01-21 18:54:53] apptainer version 1.4.1-1.1
[2026-01-21 18:54:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 18:54:53] atlasA221b
[2026-01-21 18:54:53] apptainer works
[2026-01-21 18:54:53] Set ATHENA_PROC_NUMBER=3
[2026-01-21 18:54:53] Set ATHENA_CORE_NUMBER=3
[2026-01-21 18:54:53] Starting ATLAS job with PandaID=6977086701
[2026-01-21 18:54:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 20:31:15]  *** The last 200 lines of the pilot log: ***
[2026-01-21 20:31:15] 2026-01-21 19:30:10,607 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | job 6977086701 has completed (purged errors)
[2026-01-21 20:31:15] 2026-01-21 19:30:10,608 | INFO     | overall cleanup function is called
[2026-01-21 20:31:15] 2026-01-21 19:30:11,630 | INFO     | --- collectZombieJob: --- 10, [180028]
[2026-01-21 20:31:15] 2026-01-21 19:30:11,630 | INFO     | zombie collector waiting for pid 180028
[2026-01-21 20:31:15] 2026-01-21 19:30:11,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 20:31:15] 2026-01-21 19:30:11,630 | INFO     | collected zombie processes
[2026-01-21 20:31:15] 2026-01-21 19:30:11,631 | INFO     | will attempt to kill all subprocesses of pid=180028
[2026-01-21 20:31:15] 2026-01-21 19:30:11,688 | INFO     | process IDs to be killed: [180028] (in reverse order)
[2026-01-21 20:31:15] 2026-01-21 19:30:11,745 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 20:31:15] 2026-01-21 19:30:11,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 20:31:15] 2026-01-21 19:30:11,747 | INFO     | did not find any defunct processes belonging to 180028
[2026-01-21 20:31:15] 2026-01-21 19:30:11,748 | INFO     | did not find any defunct processes belonging to 180028
[2026-01-21 20:31:15] 2026-01-21 19:30:11,748 | INFO     | ready for new job
[2026-01-21 20:31:15] 2026-01-21 19:30:11,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 20:31:15] 2026-01-21 19:30:11,749 | INFO     | **************************************
[2026-01-21 20:31:15] 2026-01-21 19:30:11,749 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 20:31:15] 2026-01-21 19:30:11,749 | INFO     | **************************************
[2026-01-21 20:31:15] 2026-01-21 19:30:11,749 | INFO     | 
[2026-01-21 20:31:15] 2026-01-21 19:30:11,749 | INFO     | architecture information:
[2026-01-21 20:31:15] 2026-01-21 19:30:11,749 | INFO     | executing command: cat /etc/os-release
[2026-01-21 20:31:15] 2026-01-21 19:30:11,783 | INFO     | cat /etc/os-release:
[2026-01-21 20:31:15] NAME="CentOS Linux"
[2026-01-21 20:31:15] VERSION="7 (Core)"
[2026-01-21 20:31:15] ID="centos"
[2026-01-21 20:31:15] ID_LIKE="rhel fedora"
[2026-01-21 20:31:15] VERSION_ID="7"
[2026-01-21 20:31:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 20:31:15] ANSI_COLOR="0;31"
[2026-01-21 20:31:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 20:31:15] HOME_URL="https://www.centos.org/"
[2026-01-21 20:31:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 20:31:15] 
[2026-01-21 20:31:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 20:31:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 20:31:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 20:31:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 20:31:15] 
[2026-01-21 20:31:15] 2026-01-21 19:30:11,784 | INFO     | **************************************
[2026-01-21 20:31:15] 2026-01-21 19:30:12,286 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 20:31:15] 2026-01-21 19:30:12,296 | INFO     | sufficient remaining disk space (346669711360 B)
[2026-01-21 20:31:15] 2026-01-21 19:30:12,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 20:31:15] 2026-01-21 19:30:12,297 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 20:31:15] 2026-01-21 19:30:12,297 | INFO     | update_server=False
[2026-01-21 20:31:15] 2026-01-21 19:30:12,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 20:31:15] 2026-01-21 19:30:12,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 20:31:15] 2026-01-21 19:30:12,414 | INFO     | all payload control threads have been joined
[2026-01-21 20:31:15] 2026-01-21 19:30:12,500 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-21 20:31:15] 2026-01-21 19:30:12,500 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-21 20:31:15] 2026-01-21 19:30:12,501 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 20:31:15] 2026-01-21 19:30:12,501 | INFO     | will abort loop
[2026-01-21 20:31:15] 2026-01-21 19:30:12,603 | INFO     | all job control threads have been joined
[2026-01-21 20:31:15] 2026-01-21 19:30:12,787 | INFO     | all data control threads have been joined
[2026-01-21 20:31:15] 2026-01-21 19:30:13,302 | INFO     | [job] retrieve thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,303 | INFO     | [job] queue monitor thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,357 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,420 | INFO     | [payload] control thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,506 | INFO     | [job] job monitor thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 20:31:15] 2026-01-21 19:30:13,572 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,609 | INFO     | [job] control thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,754 | INFO     | [job] validate thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,792 | INFO     | [data] control thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,808 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,887 | INFO     | [payload] validate_post thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:13,958 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:14,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 20:31:15] 2026-01-21 19:30:14,134 | INFO     | [data] copytool_in thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:14,676 | INFO     | [payload] failed_post thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:15,546 | INFO     | [data] copytool_out thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:18,079 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 20:31:15] 2026-01-21 19:30:42,904 | INFO     | PID=177587 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 20:31:15] 2026-01-21 19:30:42,905 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 20:31:15] 2026-01-21 19:30:42,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 20:31:15] 2026-01-21 19:30:42,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 20:31:15] 2026-01-21 19:31:09,659 | INFO     | [monitor] cgroup control has ended
[2026-01-21 20:31:15] 2026-01-21 19:31:09,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694196361024)>', '<ExcThread(monitor, started 139693341538048)>']
[2026-01-21 20:31:15] 2026-01-21 19:31:10,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 20:31:15] 2026-01-21 19:31:10,031 | INFO     | [monitor] control thread has ended
[2026-01-21 20:31:15] 2026-01-21 19:31:14,935 | INFO     | all workflow threads have been joined
[2026-01-21 20:31:15] 2026-01-21 19:31:14,935 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 20:31:15] 2026-01-21 19:31:14,936 | INFO     | traces error code: 0
[2026-01-21 20:31:15] 2026-01-21 19:31:14,936 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 20:31:15] 2026-01-21 19:31:15,022 [wrapper] ==== pilot stdout END ====
[2026-01-21 20:31:15] 2026-01-21 19:31:15,025 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 20:31:15] 2026-01-21 19:31:15,028 [wrapper] pilotpid: 177587
[2026-01-21 20:31:15] 2026-01-21 19:31:15,031 [wrapper] Pilot exit status: 0
[2026-01-21 20:31:15] 2026-01-21 19:31:15,138 [wrapper] pandaids: 6977086701 6977086701
[2026-01-21 20:31:15] 2026-01-21 19:31:15,162 [wrapper] cleanup supervisor_pilot  209018 177588
[2026-01-21 20:31:15] 2026-01-21 19:31:15,164 [wrapper] Test setup, not cleaning
[2026-01-21 20:31:15] 2026-01-21 19:31:15,166 [wrapper] apfmon messages muted
[2026-01-21 20:31:15] 2026-01-21 19:31:15,168 [wrapper] ==== wrapper stdout END ====
[2026-01-21 20:31:15] 2026-01-21 19:31:15,171 [wrapper] ==== wrapper stderr END ====
[2026-01-21 20:31:15]  *** Error codes and diagnostics ***
[2026-01-21 20:31:15]     "exeErrorCode": 0,
[2026-01-21 20:31:15]     "exeErrorDiag": "",
[2026-01-21 20:31:15]     "pilotErrorCode": 0,
[2026-01-21 20:31:15]     "pilotErrorDiag": "",
[2026-01-21 20:31:15]  *** Listing of results directory ***
[2026-01-21 20:31:15] total 1154216
[2026-01-21 20:31:15] drwx------ 5 boinc boinc      4096 Jan 14 11:00 pilot3
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc    584422 Jan 21 04:29 pilot3.tar.gz
[2026-01-21 20:31:15] -rwx------ 1 boinc boinc     36322 Jan 21 04:30 runpilot2-wrapper.sh
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc      5111 Jan 21 04:31 queuedata.json
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc       100 Jan 21 18:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 20:31:15] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 18:04 run_atlas
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc       105 Jan 21 18:04 job.xml
[2026-01-21 20:31:15] -rw-r--r-- 3 boinc boinc 497254490 Jan 21 18:05 EVNT.48301084._000049.pool.root.1
[2026-01-21 20:31:15] -rw-r--r-- 3 boinc boinc 497254490 Jan 21 18:05 ATLAS.root_0
[2026-01-21 20:31:15] drwxrwx--x 2 boinc boinc      4096 Jan 21 18:05 shared
[2026-01-21 20:31:15] -rw-r--r-- 2 boinc boinc    597754 Jan 21 18:05 input.tar.gz
[2026-01-21 20:31:15] -rw-r--r-- 2 boinc boinc     15845 Jan 21 18:05 start_atlas.sh
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc         0 Jan 21 18:05 boinc_setup_complete
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc         0 Jan 21 18:05 boinc_lockfile
[2026-01-21 20:31:15] -rw------- 1 boinc boinc   1516246 Jan 21 18:05 agis_ddmendpoints.agis.ALL.json
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc      6205 Jan 21 18:54 init_data.xml
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc      2520 Jan 21 18:54 pandaJob.out
[2026-01-21 20:31:15] -rw------- 1 boinc boinc   1002771 Jan 21 18:55 agis_schedconf.cvmfs.json
[2026-01-21 20:31:15] -rw------- 1 boinc boinc       430 Jan 21 18:55 workernode_map.json
[2026-01-21 20:31:15] -rw------- 1 boinc boinc 181231021 Jan 21 20:29 HITS.48301086._002432.pool.root.1
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc       531 Jan 21 20:29 boinc_task_state.xml
[2026-01-21 20:31:15] -rw------- 1 boinc boinc      1051 Jan 21 20:30 memory_monitor_summary.json
[2026-01-21 20:31:15] -rw------- 1 boinc boinc    291426 Jan 21 20:30 log.48301086._002432.job.log.tgz.1
[2026-01-21 20:31:15] -rw------- 1 boinc boinc      6364 Jan 21 20:30 heartbeat.json
[2026-01-21 20:31:15] -rw------- 1 boinc boinc        96 Jan 21 20:30 pilot_heartbeat.json
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc      8192 Jan 21 20:31 boinc_mmap_file
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc        27 Jan 21 20:31 wrapper_checkpoint.txt
[2026-01-21 20:31:15] -rw------- 1 boinc boinc      4933 Jan 21 20:31 pilotlog.txt
[2026-01-21 20:31:15] -rw------- 1 boinc boinc    826169 Jan 21 20:31 log.48301086._002432.job.log.1
[2026-01-21 20:31:15] -rw------- 1 boinc boinc       357 Jan 21 20:31 output.list
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc       620 Jan 21 20:31 runtime_log
[2026-01-21 20:31:15] -rw------- 1 boinc boinc   1136640 Jan 21 20:31 result.tar.gz
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc      9001 Jan 21 20:31 runtime_log.err
[2026-01-21 20:31:15] -rw------- 1 boinc boinc       791 Jan 21 20:31 EZKODmd6d28nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiuxKDmIfBJqm.diag
[2026-01-21 20:31:15] -rw-r--r-- 1 boinc boinc     14381 Jan 21 20:31 stderr.txt
[2026-01-21 20:31:15] HITS file was successfully produced:
[2026-01-21 20:31:15] -rw------- 1 boinc boinc 181231021 Jan 21 20:29 shared/HITS.pool.root.1
[2026-01-21 20:31:15]  *** Contents of shared directory: ***
[2026-01-21 20:31:15] total 664308
[2026-01-21 20:31:15] -rw-r--r-- 3 boinc boinc 497254490 Jan 21 18:05 ATLAS.root_0
[2026-01-21 20:31:15] -rw-r--r-- 2 boinc boinc    597754 Jan 21 18:05 input.tar.gz
[2026-01-21 20:31:15] -rw-r--r-- 2 boinc boinc     15845 Jan 21 18:05 start_atlas.sh
[2026-01-21 20:31:15] -rw------- 1 boinc boinc 181231021 Jan 21 20:29 HITS.pool.root.1
[2026-01-21 20:31:15] -rw------- 1 boinc boinc   1136640 Jan 21 20:31 result.tar.gz
20:31:16 (173534): run_atlas exited; CPU time 16354.728069
20:31:16 (173534): called boinc_finish(0)

</stderr_txt>
]]>

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