Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:55:12 (2514368): wrapper (7.7.26015): starting
17:55:12 (2514368): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 17:55:12] Arguments: --nthreads 3
[2026-01-21 17:55:12] Threads: 3
[2026-01-21 17:55:12] Checking for CVMFS
[2026-01-21 17:55:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 17:55:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 17:55:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 17:55:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 17:55:13] 2.9.2.0 2268285 1291 73644 155392 3 188 23207748 36864001 0 130560 0 638051 99.984 46382 12418 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 17:55:13] CVMFS is ok
[2026-01-21 17:55:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 17:55:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 17:55:13] Further information can be found at the LHC@home message board.
[2026-01-21 17:55:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 17:55:13] Checking for apptainer binary...
[2026-01-21 17:55:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 17:55:13] Running /usr/bin/apptainer --version
[2026-01-21 17:55:13] apptainer version 1.4.1-1.1
[2026-01-21 17:55:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 17:55:13] magicA246a
[2026-01-21 17:55:13] apptainer works
[2026-01-21 17:55:13] Set ATHENA_PROC_NUMBER=3
[2026-01-21 17:55:13] Set ATHENA_CORE_NUMBER=3
[2026-01-21 17:55:13] Starting ATLAS job with PandaID=6976836064
[2026-01-21 17:55:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 19:37:34]  *** The last 200 lines of the pilot log: ***
[2026-01-21 19:37:34] 2026-01-21 18:36:44,813 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,813 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,813 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,813 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | job 6976836064 has completed (purged errors)
[2026-01-21 19:37:34] 2026-01-21 18:36:44,814 | INFO     | overall cleanup function is called
[2026-01-21 19:37:34] 2026-01-21 18:36:45,820 | INFO     | --- collectZombieJob: --- 10, [2522848]
[2026-01-21 19:37:34] 2026-01-21 18:36:45,821 | INFO     | zombie collector waiting for pid 2522848
[2026-01-21 19:37:34] 2026-01-21 18:36:45,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 19:37:34] 2026-01-21 18:36:45,821 | INFO     | collected zombie processes
[2026-01-21 19:37:34] 2026-01-21 18:36:45,821 | INFO     | will attempt to kill all subprocesses of pid=2522848
[2026-01-21 19:37:34] 2026-01-21 18:36:45,876 | INFO     | process IDs to be killed: [2522848] (in reverse order)
[2026-01-21 19:37:34] 2026-01-21 18:36:45,904 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 19:37:34] 2026-01-21 18:36:45,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 19:37:34] 2026-01-21 18:36:45,906 | INFO     | did not find any defunct processes belonging to 2522848
[2026-01-21 19:37:34] 2026-01-21 18:36:45,908 | INFO     | did not find any defunct processes belonging to 2522848
[2026-01-21 19:37:34] 2026-01-21 18:36:45,908 | INFO     | ready for new job
[2026-01-21 19:37:34] 2026-01-21 18:36:45,908 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 19:37:34] 2026-01-21 18:36:45,908 | INFO     | **************************************
[2026-01-21 19:37:34] 2026-01-21 18:36:45,908 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 19:37:34] 2026-01-21 18:36:45,909 | INFO     | **************************************
[2026-01-21 19:37:34] 2026-01-21 18:36:45,909 | INFO     | 
[2026-01-21 19:37:34] 2026-01-21 18:36:45,909 | INFO     | architecture information:
[2026-01-21 19:37:34] 2026-01-21 18:36:45,909 | INFO     | executing command: cat /etc/os-release
[2026-01-21 19:37:34] 2026-01-21 18:36:45,918 | INFO     | cat /etc/os-release:
[2026-01-21 19:37:34] NAME="CentOS Linux"
[2026-01-21 19:37:34] VERSION="7 (Core)"
[2026-01-21 19:37:34] ID="centos"
[2026-01-21 19:37:34] ID_LIKE="rhel fedora"
[2026-01-21 19:37:34] VERSION_ID="7"
[2026-01-21 19:37:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 19:37:34] ANSI_COLOR="0;31"
[2026-01-21 19:37:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 19:37:34] HOME_URL="https://www.centos.org/"
[2026-01-21 19:37:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 19:37:34] 
[2026-01-21 19:37:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 19:37:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 19:37:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 19:37:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 19:37:34] 
[2026-01-21 19:37:34] 2026-01-21 18:36:45,919 | INFO     | **************************************
[2026-01-21 19:37:34] 2026-01-21 18:36:46,421 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 19:37:34] 2026-01-21 18:36:46,432 | INFO     | sufficient remaining disk space (280076746752 B)
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | INFO     | update_server=False
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | INFO     | aborting loop
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 19:37:34] 2026-01-21 18:36:46,433 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 19:37:34] 2026-01-21 18:36:47,237 | INFO     | all payload control threads have been joined
[2026-01-21 19:37:34] 2026-01-21 18:36:47,437 | INFO     | [job] retrieve thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:47,438 | INFO     | [job] job monitor thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:47,438 | INFO     | [job] queue monitor thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:47,461 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:47,529 | INFO     | all data control threads have been joined
[2026-01-21 19:37:34] 2026-01-21 18:36:47,558 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:47,560 | INFO     | [data] copytool_in thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:47,620 | INFO     | all job control threads have been joined
[2026-01-21 19:37:34] 2026-01-21 18:36:47,987 | INFO     | [payload] validate_post thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:48,164 | INFO     | [payload] failed_post thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:48,242 | INFO     | [payload] control thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:48,434 | INFO     | [data] copytool_out thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:48,535 | INFO     | [data] control thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:48,625 | INFO     | [job] control thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:48,829 | INFO     | [job] validate thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:48,883 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:49,448 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 19:37:34] 2026-01-21 18:36:53,455 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:36:56,541 | INFO     | job.realtimelogging is not enabled
[2026-01-21 19:37:34] 2026-01-21 18:36:57,545 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 19:37:34] 2026-01-21 18:37:16,986 | INFO     | PID=2518422 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-21 19:37:34] 2026-01-21 18:37:16,987 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 19:37:34] 2026-01-21 18:37:16,987 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 19:37:34] 2026-01-21 18:37:16,987 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 19:37:34] 2026-01-21 18:37:28,417 | INFO     | [monitor] cgroup control has ended
[2026-01-21 19:37:34] 2026-01-21 18:37:29,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140210775742272)>', '<ExcThread(monitor, started 140210494256896)>']
[2026-01-21 19:37:34] 2026-01-21 18:37:30,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 19:37:34] 2026-01-21 18:37:30,051 | INFO     | [monitor] control thread has ended
[2026-01-21 19:37:34] 2026-01-21 18:37:34,848 | INFO     | all workflow threads have been joined
[2026-01-21 19:37:34] 2026-01-21 18:37:34,848 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 19:37:34] 2026-01-21 18:37:34,848 | INFO     | traces error code: 0
[2026-01-21 19:37:34] 2026-01-21 18:37:34,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 19:37:34] 2026-01-21 18:37:34,902 [wrapper] ==== pilot stdout END ====
[2026-01-21 19:37:34] 2026-01-21 18:37:34,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 19:37:34] 2026-01-21 18:37:34,906 [wrapper] pilotpid: 2518422
[2026-01-21 19:37:34] 2026-01-21 18:37:34,909 [wrapper] Pilot exit status: 0
[2026-01-21 19:37:34] 2026-01-21 18:37:34,916 [wrapper] pandaids: 6976836064
[2026-01-21 19:37:34] 2026-01-21 18:37:34,936 [wrapper] cleanup supervisor_pilot 2529694 2518423
[2026-01-21 19:37:34] 2026-01-21 18:37:34,938 [wrapper] Test setup, not cleaning
[2026-01-21 19:37:34] 2026-01-21 18:37:34,940 [wrapper] apfmon messages muted
[2026-01-21 19:37:34] 2026-01-21 18:37:34,942 [wrapper] ==== wrapper stdout END ====
[2026-01-21 19:37:34] 2026-01-21 18:37:34,945 [wrapper] ==== wrapper stderr END ====
[2026-01-21 19:37:34]  *** Error codes and diagnostics ***
[2026-01-21 19:37:34]     "exeErrorCode": 0,
[2026-01-21 19:37:34]     "exeErrorDiag": "",
[2026-01-21 19:37:34]     "pilotErrorCode": 0,
[2026-01-21 19:37:34]     "pilotErrorDiag": "",
[2026-01-21 19:37:34]  *** Listing of results directory ***
[2026-01-21 19:37:34] total 422972
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc    584422 Jan 20 19:43 pilot3.tar.gz
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc      5111 Jan 20 20:33 queuedata.json
[2026-01-21 19:37:34] -rwx------ 1 boinc boinc     36322 Jan 20 20:33 runpilot2-wrapper.sh
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc       100 Jan 21 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 19:37:34] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 17:55 run_atlas
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc       105 Jan 21 17:55 job.xml
[2026-01-21 19:37:34] -rw-r--r-- 2 boinc boinc 250715097 Jan 21 17:55 EVNT.48299667._000002.pool.root.1
[2026-01-21 19:37:34] drwxrwx--x 2 boinc boinc      4096 Jan 21 17:55 shared
[2026-01-21 19:37:34] -rw-r--r-- 2 boinc boinc    597761 Jan 21 17:55 input.tar.gz
[2026-01-21 19:37:34] -rw-r--r-- 2 boinc boinc     15845 Jan 21 17:55 start_atlas.sh
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc         0 Jan 21 17:55 boinc_setup_complete
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc      6447 Jan 21 17:55 init_data.xml
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc         0 Jan 21 17:55 boinc_lockfile
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc      2593 Jan 21 17:55 pandaJob.out
[2026-01-21 19:37:34] -rw------- 1 boinc boinc   1002771 Jan 21 17:55 agis_schedconf.cvmfs.json
[2026-01-21 19:37:34] -rw------- 1 boinc boinc   1516246 Jan 21 17:55 agis_ddmendpoints.agis.ALL.json
[2026-01-21 19:37:34] -rw------- 1 boinc boinc       428 Jan 21 17:55 workernode_map.json
[2026-01-21 19:37:34] drwx------ 5 boinc boinc      4096 Jan 21 17:55 pilot3
[2026-01-21 19:37:34] -rw------- 1 boinc boinc 176184561 Jan 21 19:36 HITS.48299669._000081.pool.root.1
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc       529 Jan 21 19:36 boinc_task_state.xml
[2026-01-21 19:37:34] -rw------- 1 boinc boinc      1016 Jan 21 19:36 memory_monitor_summary.json
[2026-01-21 19:37:34] -rw------- 1 boinc boinc    262333 Jan 21 19:36 log.48299669._000081.job.log.tgz.1
[2026-01-21 19:37:34] -rw------- 1 boinc boinc      6304 Jan 21 19:36 heartbeat.json
[2026-01-21 19:37:34] -rw------- 1 boinc boinc        95 Jan 21 19:37 pilot_heartbeat.json
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc      8192 Jan 21 19:37 boinc_mmap_file
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc        27 Jan 21 19:37 wrapper_checkpoint.txt
[2026-01-21 19:37:34] -rw------- 1 boinc boinc      4820 Jan 21 19:37 pilotlog.txt
[2026-01-21 19:37:34] -rw------- 1 boinc boinc    883090 Jan 21 19:37 log.48299669._000081.job.log.1
[2026-01-21 19:37:34] -rw------- 1 boinc boinc       357 Jan 21 19:37 output.list
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc       620 Jan 21 19:37 runtime_log
[2026-01-21 19:37:34] -rw------- 1 boinc boinc   1167360 Jan 21 19:37 result.tar.gz
[2026-01-21 19:37:34] -rw------- 1 boinc boinc       661 Jan 21 19:37 vfcKDmweW28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhxpKDmfHWX6m.diag
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc      8916 Jan 21 19:37 runtime_log.err
[2026-01-21 19:37:34] -rw-r--r-- 1 boinc boinc     12737 Jan 21 19:37 stderr.txt
[2026-01-21 19:37:34] HITS file was successfully produced:
[2026-01-21 19:37:34] -rw------- 1 boinc boinc 176184561 Jan 21 19:36 shared/HITS.pool.root.1
[2026-01-21 19:37:34]  *** Contents of shared directory: ***
[2026-01-21 19:37:34] total 418644
[2026-01-21 19:37:34] -rw-r--r-- 2 boinc boinc 250715097 Jan 21 17:55 ATLAS.root_0
[2026-01-21 19:37:34] -rw-r--r-- 2 boinc boinc    597761 Jan 21 17:55 input.tar.gz
[2026-01-21 19:37:34] -rw-r--r-- 2 boinc boinc     15845 Jan 21 17:55 start_atlas.sh
[2026-01-21 19:37:34] -rw------- 1 boinc boinc 176184561 Jan 21 19:36 HITS.pool.root.1
[2026-01-21 19:37:34] -rw------- 1 boinc boinc   1167360 Jan 21 19:37 result.tar.gz
19:37:36 (2514368): run_atlas exited; CPU time 17623.798483
19:37:36 (2514368): called boinc_finish(0)

</stderr_txt>
]]>

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