Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:45:26 (268579): wrapper (7.7.26015): starting
08:45:26 (268579): wrapper: running run_atlas (--nthreads 3)
[2026-01-21 08:45:26] Arguments: --nthreads 3
[2026-01-21 08:45:26] Threads: 3
[2026-01-21 08:45:26] Checking for CVMFS
[2026-01-21 08:45:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-21 08:45:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-21 08:45:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-21 08:45:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-21 08:45:48] 2.9.2.0 204975 177 51700 155377 2 50 12694092 36864001 0 130560 0 79970 99.963 10358 30735 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-21 08:45:48] CVMFS is ok
[2026-01-21 08:45:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-21 08:45:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-21 08:45:48] Further information can be found at the LHC@home message board.
[2026-01-21 08:45:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-21 08:45:48] Checking for apptainer binary...
[2026-01-21 08:45:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-21 08:45:48] Running /usr/bin/apptainer --version
[2026-01-21 08:45:48] apptainer version 1.4.1-1.1
[2026-01-21 08:45:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-21 08:45:48] atlasA221b
[2026-01-21 08:45:48] apptainer works
[2026-01-21 08:45:48] Set ATHENA_PROC_NUMBER=3
[2026-01-21 08:45:48] Set ATHENA_CORE_NUMBER=3
[2026-01-21 08:45:48] Starting ATLAS job with PandaID=6977079814
[2026-01-21 08:45:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-21 10:17:25]  *** The last 200 lines of the pilot log: ***
[2026-01-21 10:17:25] 2026-01-21 09:16:53,007 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,007 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-21 10:17:25] 2026-01-21 09:16:53,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,009 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-21 10:17:25] 2026-01-21 09:16:53,009 | INFO     | job 6977079814 has completed (purged errors)
[2026-01-21 10:17:25] 2026-01-21 09:16:53,009 | INFO     | overall cleanup function is called
[2026-01-21 10:17:25] 2026-01-21 09:16:54,015 | INFO     | --- collectZombieJob: --- 10, [277227]
[2026-01-21 10:17:25] 2026-01-21 09:16:54,015 | INFO     | zombie collector waiting for pid 277227
[2026-01-21 10:17:25] 2026-01-21 09:16:54,016 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-21 10:17:25] 2026-01-21 09:16:54,016 | INFO     | collected zombie processes
[2026-01-21 10:17:25] 2026-01-21 09:16:54,016 | INFO     | will attempt to kill all subprocesses of pid=277227
[2026-01-21 10:17:25] 2026-01-21 09:16:54,068 | INFO     | process IDs to be killed: [277227] (in reverse order)
[2026-01-21 10:17:25] 2026-01-21 09:16:54,097 | WARNING  | found no corresponding commands to process id(s)
[2026-01-21 10:17:25] 2026-01-21 09:16:54,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-21 10:17:25] 2026-01-21 09:16:54,099 | INFO     | did not find any defunct processes belonging to 277227
[2026-01-21 10:17:25] 2026-01-21 09:16:54,100 | INFO     | did not find any defunct processes belonging to 277227
[2026-01-21 10:17:25] 2026-01-21 09:16:54,100 | INFO     | ready for new job
[2026-01-21 10:17:25] 2026-01-21 09:16:54,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-21 10:17:25] 2026-01-21 09:16:54,101 | INFO     | **************************************
[2026-01-21 10:17:25] 2026-01-21 09:16:54,101 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-21 10:17:25] 2026-01-21 09:16:54,101 | INFO     | **************************************
[2026-01-21 10:17:25] 2026-01-21 09:16:54,101 | INFO     | 
[2026-01-21 10:17:25] 2026-01-21 09:16:54,101 | INFO     | architecture information:
[2026-01-21 10:17:25] 2026-01-21 09:16:54,101 | INFO     | executing command: cat /etc/os-release
[2026-01-21 10:17:25] 2026-01-21 09:16:54,111 | INFO     | cat /etc/os-release:
[2026-01-21 10:17:25] NAME="CentOS Linux"
[2026-01-21 10:17:25] VERSION="7 (Core)"
[2026-01-21 10:17:25] ID="centos"
[2026-01-21 10:17:25] ID_LIKE="rhel fedora"
[2026-01-21 10:17:25] VERSION_ID="7"
[2026-01-21 10:17:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-21 10:17:25] ANSI_COLOR="0;31"
[2026-01-21 10:17:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-21 10:17:25] HOME_URL="https://www.centos.org/"
[2026-01-21 10:17:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-21 10:17:25] 
[2026-01-21 10:17:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-21 10:17:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-21 10:17:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-21 10:17:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-21 10:17:25] 
[2026-01-21 10:17:25] 2026-01-21 09:16:54,111 | INFO     | **************************************
[2026-01-21 10:17:25] 2026-01-21 09:16:54,615 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-21 10:17:25] 2026-01-21 09:16:54,651 | INFO     | sufficient remaining disk space (347525349376 B)
[2026-01-21 10:17:25] 2026-01-21 09:16:54,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-21 10:17:25] 2026-01-21 09:16:54,653 | INFO     | current server update state: UPDATING_FINAL
[2026-01-21 10:17:25] 2026-01-21 09:16:54,653 | INFO     | update_server=False
[2026-01-21 10:17:25] 2026-01-21 09:16:54,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-21 10:17:25] 2026-01-21 09:16:54,654 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:17:25] 2026-01-21 09:16:54,654 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-21 10:17:25] 2026-01-21 09:16:54,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-21 10:17:25] 2026-01-21 09:16:54,675 | INFO     | job.realtimelogging is not enabled
[2026-01-21 10:17:25] 2026-01-21 09:16:55,387 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-21 10:17:25] 2026-01-21 09:16:55,387 | INFO     | aborting loop
[2026-01-21 10:17:25] 2026-01-21 09:16:55,457 | INFO     | all data control threads have been joined
[2026-01-21 10:17:25] 2026-01-21 09:16:55,657 | INFO     | [job] queue monitor thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:55,658 | INFO     | [job] retrieve thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:55,680 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:55,790 | INFO     | [payload] execute_payloads thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:55,967 | INFO     | all job control threads have been joined
[2026-01-21 10:17:25] 2026-01-21 09:16:56,021 | INFO     | [payload] failed_post thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,071 | INFO     | all payload control threads have been joined
[2026-01-21 10:17:25] 2026-01-21 09:16:56,393 | INFO     | [job] job monitor thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,462 | INFO     | [data] control thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,504 | INFO     | [job] validate thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,539 | INFO     | [job] create_data_payload thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,561 | INFO     | [payload] validate_pre thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,593 | INFO     | [payload] validate_post thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,659 | INFO     | [data] copytool_out thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,718 | INFO     | [data] copytool_in thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:56,973 | INFO     | [job] control thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:57,077 | INFO     | [payload] control thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:16:58,660 | INFO     | [data] queue_monitor thread has finished
[2026-01-21 10:17:25] 2026-01-21 09:17:10,894 | INFO     | [monitor] cgroup control has ended
[2026-01-21 10:17:25] 2026-01-21 09:17:12,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714857457472)>', '<ExcThread(monitor, started 139713994282752)>']
[2026-01-21 10:17:25] 2026-01-21 09:17:17,507 | INFO     | all workflow threads have been joined
[2026-01-21 10:17:25] 2026-01-21 09:17:17,508 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-21 10:17:25] 2026-01-21 09:17:17,508 | INFO     | traces error code: 0
[2026-01-21 10:17:25] 2026-01-21 09:17:17,509 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-21 10:17:25] 2026-01-21 09:17:24,905 | INFO     | PID=272729 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-21 10:17:25] 2026-01-21 09:17:24,905 | INFO     | found 0 job(s) in 20 queues
[2026-01-21 10:17:25] 2026-01-21 09:17:24,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-21 10:17:25] 2026-01-21 09:17:24,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-21 10:17:25] 2026-01-21 09:17:24,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-21 10:17:25] 2026-01-21 09:17:24,905 | INFO     | [monitor] control thread has ended
[2026-01-21 10:17:25] 2026-01-21 09:17:24,952 [wrapper] ==== pilot stdout END ====
[2026-01-21 10:17:25] 2026-01-21 09:17:24,955 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-21 10:17:25] 2026-01-21 09:17:24,957 [wrapper] pilotpid: 272729
[2026-01-21 10:17:25] 2026-01-21 09:17:24,960 [wrapper] Pilot exit status: 0
[2026-01-21 10:17:25] 2026-01-21 09:17:24,967 [wrapper] pandaids: 6977079814
[2026-01-21 10:17:25] 2026-01-21 09:17:24,986 [wrapper] cleanup supervisor_pilot  300351 272730
[2026-01-21 10:17:25] 2026-01-21 09:17:24,989 [wrapper] Test setup, not cleaning
[2026-01-21 10:17:25] 2026-01-21 09:17:24,991 [wrapper] apfmon messages muted
[2026-01-21 10:17:25] 2026-01-21 09:17:24,993 [wrapper] ==== wrapper stdout END ====
[2026-01-21 10:17:25] 2026-01-21 09:17:24,996 [wrapper] ==== wrapper stderr END ====
[2026-01-21 10:17:25]  *** Error codes and diagnostics ***
[2026-01-21 10:17:25]     "exeErrorCode": 0,
[2026-01-21 10:17:25]     "exeErrorDiag": "",
[2026-01-21 10:17:25]     "pilotErrorCode": 0,
[2026-01-21 10:17:25]     "pilotErrorDiag": "",
[2026-01-21 10:17:25]  *** Listing of results directory ***
[2026-01-21 10:17:25] total 661624
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc    584422 Jan 21 02:23 pilot3.tar.gz
[2026-01-21 10:17:25] -rwx------ 1 boinc boinc     36322 Jan 21 02:25 runpilot2-wrapper.sh
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc      5111 Jan 21 02:27 queuedata.json
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc       100 Jan 21 08:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-21 10:17:25] -rwxr-xr-x 1 boinc boinc      7986 Jan 21 08:45 run_atlas
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc       105 Jan 21 08:45 job.xml
[2026-01-21 10:17:25] -rw-r--r-- 2 boinc boinc 495320470 Jan 21 08:45 EVNT.48301084._000034.pool.root.1
[2026-01-21 10:17:25] -rw-r--r-- 2 boinc boinc    597753 Jan 21 08:45 input.tar.gz
[2026-01-21 10:17:25] -rw-r--r-- 2 boinc boinc     15845 Jan 21 08:45 start_atlas.sh
[2026-01-21 10:17:25] drwxrwx--x 2 boinc boinc      4096 Jan 21 08:45 shared
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc         0 Jan 21 08:45 boinc_setup_complete
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc      6199 Jan 21 08:45 init_data.xml
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc         0 Jan 21 08:45 boinc_lockfile
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc      2518 Jan 21 08:45 pandaJob.out
[2026-01-21 10:17:25] -rw------- 1 boinc boinc   1000361 Jan 21 08:45 agis_schedconf.cvmfs.json
[2026-01-21 10:17:25] -rw------- 1 boinc boinc   1516246 Jan 21 08:45 agis_ddmendpoints.agis.ALL.json
[2026-01-21 10:17:25] -rw------- 1 boinc boinc       430 Jan 21 08:46 workernode_map.json
[2026-01-21 10:17:25] drwx------ 5 boinc boinc      4096 Jan 21 08:46 pilot3
[2026-01-21 10:17:25] -rw------- 1 boinc boinc        95 Jan 21 10:16 pilot_heartbeat.json
[2026-01-21 10:17:25] -rw------- 1 boinc boinc 176145325 Jan 21 10:16 HITS.48301086._001661.pool.root.1
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc       530 Jan 21 10:16 boinc_task_state.xml
[2026-01-21 10:17:25] -rw------- 1 boinc boinc      1032 Jan 21 10:16 memory_monitor_summary.json
[2026-01-21 10:17:25] -rw------- 1 boinc boinc    261236 Jan 21 10:16 log.48301086._001661.job.log.tgz.1
[2026-01-21 10:17:25] -rw------- 1 boinc boinc      6333 Jan 21 10:16 heartbeat.json
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc      8192 Jan 21 10:17 boinc_mmap_file
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc        27 Jan 21 10:17 wrapper_checkpoint.txt
[2026-01-21 10:17:25] -rw------- 1 boinc boinc       746 Jan 21 10:17 pilotlog.txt
[2026-01-21 10:17:25] -rw------- 1 boinc boinc    793009 Jan 21 10:17 log.48301086._001661.job.log.1
[2026-01-21 10:17:25] -rw------- 1 boinc boinc       357 Jan 21 10:17 output.list
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc       620 Jan 21 10:17 runtime_log
[2026-01-21 10:17:25] -rw------- 1 boinc boinc   1075200 Jan 21 10:17 result.tar.gz
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc      8916 Jan 21 10:17 runtime_log.err
[2026-01-21 10:17:25] -rw------- 1 boinc boinc       661 Jan 21 10:17 FfCNDmg9b28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPtqKDmHJB5Nm.diag
[2026-01-21 10:17:25] -rw-r--r-- 1 boinc boinc     12723 Jan 21 10:17 stderr.txt
[2026-01-21 10:17:25] HITS file was successfully produced:
[2026-01-21 10:17:25] -rw------- 1 boinc boinc 176145325 Jan 21 10:16 shared/HITS.pool.root.1
[2026-01-21 10:17:25]  *** Contents of shared directory: ***
[2026-01-21 10:17:25] total 657392
[2026-01-21 10:17:25] -rw-r--r-- 2 boinc boinc 495320470 Jan 21 08:45 ATLAS.root_0
[2026-01-21 10:17:25] -rw-r--r-- 2 boinc boinc    597753 Jan 21 08:45 input.tar.gz
[2026-01-21 10:17:25] -rw-r--r-- 2 boinc boinc     15845 Jan 21 08:45 start_atlas.sh
[2026-01-21 10:17:25] -rw------- 1 boinc boinc 176145325 Jan 21 10:16 HITS.pool.root.1
[2026-01-21 10:17:25] -rw------- 1 boinc boinc   1075200 Jan 21 10:17 result.tar.gz
10:17:26 (268579): run_atlas exited; CPU time 15663.092293
10:17:26 (268579): called boinc_finish(0)

</stderr_txt>
]]>

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